IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1081	 38.72	0	1304439..1305422	+	327	118476859	potA	BALH_1147	-	spermidine/putrescine ABC transporter, ATP-binding protein
1082	 37.10	0	1305419..1306267	+	282	118476860	-	BALH_1148	-	spermidine/putrescine ABC transporter, permease
1083	 34.46	0	1306274..1307074	+	266	118476861	-	BALH_1149	-	spermidine/putrescine ABC transporter, permease
1084	 34.48	0	1307113..1308162	+	349	118476862	-	BALH_1150	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1085	 36.57	0	1308222..1308869	+	215	118476863	-	BALH_1151	-	PAP2 family protein
1086	 35.84	0	1308980..1311172	+	730	118476864	-	BALH_1152	-	transporter
1087	 34.74	0	1311264..1311689	+	141	118476865	-	BALH_1154	-	hypothetical protein
1088	 36.80	0	1311788..1312711	+	307	118476866	-	BALH_1155	-	ribosomal large subunit pseudouridylate synthase D
1089	 29.37	-1	1312803..1313408	+	201	118476867	-	BALH_1156	-	membrane spanning protein
1090	 39.25	+1	1313449..1314276	-	275	118476868	-	BALH_1157	-	hypothetical protein
1091	 37.47	0	1314742..1316070	-	442	118476869	glcF	BALH_1158	-	(S)-2-hydroxy-acid oxidase
1092	 39.42	+1	1316067..1317479	-	470	118476870	glcD	BALH_1159	-	(S)-2-hydroxy-acid oxidase, subunit D
1093	 33.96	0	1317597..1318712	-	371	118476871	-	BALH_1160	-	CdaR family transcriptional regulator
1094	 36.31	0	1318849..1319823	+	324	118476872	-	BALH_1161	-	lipoprotein
1095	 37.35	0	1319816..1320487	+	223	118476873	resD	BALH_1162	-	response regulator
1096	 34.90	0	1320491..1321891	+	466	118476874	resE	BALH_1163	-	sensor histidine kinase
1097	 36.07	0	1322152..1322808	+	218	118476875	-	BALH_1164	-	GntR family transcriptional regulator
1098	 37.92	0	1322977..1323696	+	239	118476876	-	BALH_1165	-	(S)-2-hydroxy-acid oxidase, iron-sulfur subunit
1099	 38.82	0	1323713..1325134	+	473	118476877	-	BALH_1166	-	iron-sulfur cluster-binding protein
1100	 36.01	0	1325134..1325844	+	236	118476878	-	BALH_1167	-	hypothetical protein
1101	 33.60	0	1325930..1326679	+	249	118476879	-	BALH_1168	-	N-methyltransferase)
1102	 36.54	0	1326694..1327005	+	103	118476880	-	BALH_1169	-	hypothetical protein
1103	 35.68	0	1327032..1327883	-	283	118476881	-	BALH_1170	-	formate/nitrite transporter family protein
1104	 36.87	0	1328087..1329019	-	310	118476882	-	BALH_1171	-	TerC family integral membrane protein
1105	 34.39	0	1329176..1330495	-	439	118476883	-	BALH_1173	-	cation transporter
1106	 37.88	0	1330610..1330807	-	65	118476884	-	BALH_1174	-	small acid-soluble spore protein alpha/beta family protein
1107	 38.15	0	1330943..1331482	-	179	118476885	-	BALH_1175	-	dehydratase
1108	 33.52	0	1331488..1332012	-	174	118476886	-	BALH_1176	-	phasin (PhaP protein)
1109	 36.87	0	1332055..1332507	-	150	118476887	phaQ	BALH_1177	-	PadR family transcriptional regulator
1110	 32.96	0	1332658..1333188	+	176	118476888	-	BALH_1178	-	PHA synthase subunit PhaR
1111	 37.23	0	1333340..1334083	+	247	118476889	phaB	BALH_1179	-	acetoacetyl-CoA reductase
1112	 37.48	0	1334166..1335251	+	361	118476890	-	BALH_1180	-	poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
1113	 34.76	0	1335347..1336540	+	397	118476891	-	BALH_1181	-	oxidoreductase
1114	 36.96	0	1336564..1337913	+	449	118476892	-	BALH_1184	-	cation transporter
1115	 36.61	0	1337952..1338287	-	111	118476893	-	BALH_1185	-	hypothetical protein
1116	 35.28	0	1338817..1339893	+	358	118476894	afuA	BALH_1186	-	ABC transporter, solute-binding protein
1117	 37.33	0	1339815..1340915	+	366	118476895	-	BALH_1187	-	ABC transporter, ATP-binding protein
1118	 36.18	0	1340916..1342673	+	585	118476896	-	BALH_1188	-	ABC transporter, permease
1119	 38.66	0	1342683..1343489	+	268	118476897	-	BALH_1189	-	phosphonoacetaldehyde hydrolase
1120	 34.88	0	1343505..1344602	+	365	118476898	phnW	BALH_1190	-	2-aminoethylphosphonate--pyruvate transaminase
1121	 37.38	0	1344599..1345783	+	394	118476899	-	BALH_1191	-	L-lysine dehydrogenase
1122	 37.16	0	1345824..1346606	+	260	118476900	-	BALH_1192	-	DeoR family transcriptional regulator
1123	 31.92	-1	1347020..1349353	+	777	118476901	inlA	BALH_1193	-	internalin
1124	 33.17	0	1349602..1350231	+	209	118476902	-	BALH_1194	-	hypothetical protein
1125	 32.41	0	1350330..1350980	+	216	118476903	-	BALH_1195	-	hypothetical protein
1126	 35.67	0	1351048..1351818	-	256	118476904	-	BALH_1196	-	divergent polysaccharide deacetylase
1127	 34.34	0	1352469..1353965	-	498	118476905	kinD	BALH_1197	-	sensor histidine kinase, sporulation kinase
1128	 33.56	0	1354156..1354602	+	148	118476906	-	BALH_1198	-	MarR family transcriptional regulator
1129	 35.52	0	1354763..1356457	+	564	118476907	-	BALH_1199	-	oligoendopeptidase F
1130	 35.96	0	1356596..1357129	+	177	118476908	-	BALH_1200	-	hypothetical protein
1131	 33.17	0	1357360..1358568	-	402	118476909	kinB	BALH_1201	-	sporulation kinase B
1132	 37.20	0	1358904..1359575	+	223	118476910	-	BALH_1202	-	aluminum resistance protein
1133	 34.15	0	1359575..1360066	+	163	118476911	-	BALH_1203	-	6-pyruvoyl tetrahydrobiopterin synthase
1134	 37.24	0	1360059..1360775	+	238	118476912	-	BALH_1204	-	radical SAM domain-containing protein
1135	 33.53	0	1360785..1361291	+	168	118476913	-	BALH_1205	-	7-cyano-7-deazaguanine reductase
1136	 31.77	-1	1361347..1361538	-	63	118476914	-	BALH_1206	-	hypothetical protein
1137	 39.38	+1	1362028..1362639	+	203	118476915	-	BALH_1207	-	hypothetical protein
1138	 34.63	0	1362675..1363289	-	204	118476916	-	BALH_1208	-	acetyltransferase
1139	 34.31	0	1363490..1363693	+	67	118476917	-	BALH_1209	-	hypothetical protein
1140	 34.59	0	1363720..1364037	+	105	118476918	-	BALH_1210	-	hypothetical protein
1141	 36.11	0	1364514..1364873	+	119	118476919	nrdI	BALH_1211	-	ribonucleotide reductase stimulatory protein
1142	 36.63	0	1364860..1366587	+	575	118476920	nrdE	BALH_1212	-	ribonucleoside-diphosphate reductase, alpha subunit
1143	 34.89	0	1366783..1367616	+	277	118476921	-	BALH_1213	-	hypothetical protein
1144	 35.81	0	1368163..1369131	+	322	118476922	nrdF	BALH_1214	-	ribonucleotide-diphosphate reductase subunit beta
1145	 35.96	0	1369348..1369728	+	126	118476923	-	BALH_1215	-	GntR family transcriptional regulator
1146	 34.05	0	1369725..1370423	+	232	118476924	-	BALH_1216	-	multidrug ABC transporter, ATP-binding protein
1147	 28.10	-2	1370420..1371202	+	260	118476925	-	BALH_1217	-	ABC transporter, permease
1148	 37.65	0	1371217..1372119	+	300	118476926	bcrA	BALH_1218	-	bacitracin ABC transporter, ATP-binding protein
1149	 30.63	-1	1372119..1372895	+	258	118476927	bcrB	BALH_1219	-	bacitracin ABC transporter, permease component
1150	 34.21	0	1373083..1374111	+	342	118476928	-	BALH_1220	-	AbrB family transcriptional regulator
1151	 32.79	0	1374141..1374323	-	60	118476929	-	BALH_1221	-	hypothetical protein
1152	 32.17	-1	1374424..1374939	-	171	118476930	-	BALH_1222	-	AsnC family transcriptional regulator
1153	 33.54	0	1374940..1375431	+	163	118476931	-	BALH_1223	-	hypothetical protein
1154	 33.51	0	1375421..1375978	+	185	118476932	-	BALH_1224	-	isochorismatase family protein
1155	 37.34	0	1376065..1376463	+	132	118476933	-	BALH_1225	-	enhancer of serine sensitivity, N-terminal region
1156	 38.55	0	1376492..1377412	-	306	118476934	ldcA	BALH_1226	-	muramoyltetrapeptide carboxypeptidase
1157	 40.19	+1	1377486..1378622	+	378	118476935	-	BALH_1227	-	2-nitropropane dioxygenase (nitroalkane oxidase)
1158	 34.78	0	1378640..1379815	-	391	118476936	-	BALH_1228	-	undecaprenol-phosphate-poly(glycerophosphate subunit) D-alanine transfer protein
1159	 30.68	-1	1379812..1380075	-	87	118476937	-	BALH_1229	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1160	 32.39	0	1380121..1381287	-	388	118476938	-	BALH_1230	-	D-alanyl transfer protein
1161	 37.16	0	1381284..1382798	-	504	118476939	dltA	BALH_1231	-	D-alanine--D-alanyl carrier protein ligase
1162	 38.16	0	1383223..1384464	+	413	118476940	-	BALH_1232	-	aminoacylase (N-acyl-L-amino acid amidohydrolase)
1163	 36.31	0	1384803..1385306	+	167	118476941	-	BALH_1233	-	flavodoxin
1164	 34.24	0	1385331..1386104	+	257	118476942	-	BALH_1234	-	hypothetical protein
1165	 33.94	0	1385959..1386285	-	108	118476943	-	BALH_1235	-	hypothetical protein
1166	 33.67	0	1386368..1387270	-	300	118476944	-	BALH_1236	-	aminoglycoside phophotransferase
1167	 30.64	-1	1387354..1387872	+	172	118476945	-	BALH_1237	-	transcriptional regulator
1168	 36.78	0	1388352..1389713	-	453	118476946	-	BALH_1238	-	multidrug efflux protein
1169	 36.94	0	1389856..1390686	+	276	118476947	-	BALH_1240	-	undecaprenyl pyrophosphate phosphatase
1170	 34.69	0	1390716..1391303	-	195	118476948	-	BALH_1241	-	thioredoxin
1171	 33.33	0	1391931..1392350	+	139	118476949	-	BALH_1242	-	MarR family transcriptional regulator
1172	 39.00	0	1392665..1393900	-	411	118476950	gltT	BALH_1243	-	proton/sodium-glutamate symport protein
1173	 33.85	0	1395088..1396437	+	449	118476951	-	BALH_1245	-	potassium/sodium uptake protein
1174	 38.33	0	1396471..1396890	-	139	118476952	-	BALH_1246	-	hypothetical protein
1175	 36.32	0	1397069..1397536	+	155	118476953	-	BALH_1247	-	hypothetical protein
1176	 40.96	+1	1398087..1398335	-	82	118476954	-	BALH_1248	-	hypothetical protein
1177	 33.33	0	1398453..1398710	-	85	118476955	-	BALH_1249	-	hypothetical protein
1178	 26.77	-2	1398752..1398949	+	65	118476956	-	BALH_1250	-	hypothetical protein
1179	 36.57	0	1399108..1400004	+	298	118476957	ilvE	BALH_1251	-	branched-chain amino acid aminotransferase
1180	 39.70	+1	1400417..1402174	+	585	118476958	alsS	BALH_1252	-	acetolactate synthase catalytic subunit
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.