IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
941	 31.06	-2	1150617..1150880	-	87	29346351	-	BT_0941	-	hypothetical protein
942	 36.63	-1	1151297..1152085	-	262	29346352	-	BT_0942	-	putative dinitrogenase reductase activating glycohydrolase
943	 37.32	-1	1152317..1153219	-	300	29346353	-	BT_0943	-	penicillin-binding protein 2B (PBP-2B)
944	 30.70	-2	1153416..1153757	-	113	29346354	-	BT_0944	-	hypothetical protein
945	 32.49	-2	1153770..1154243	-	157	29346355	-	BT_0945	-	hypothetical protein
946	 31.73	-2	1155235..1155981	+	248	29346356	-	BT_0946	-	hypothetical protein
947	 34.52	-1	1156037..1156624	-	195	29346357	-	BT_0947	-	integrase
948	 38.15	-1	1156970..1157986	-	338	29346358	-	BT_0948	-	hypothetical protein
949	 38.60	0	1158487..1158714	-	75	29346359	-	BT_0949	-	hypothetical protein
950	 36.68	-1	1158701..1160494	-	597	29346360	-	BT_0950	-	hypothetical protein
951	 41.88	0	1160570..1161049	-	159	29346361	-	BT_0951	-	hypothetical protein
952	 35.64	-1	1161223..1162047	-	274	29346362	-	BT_0952	-	hypothetical protein
953	 32.63	-2	1162125..1163114	-	329	29346363	-	BT_0953	-	integrase
954	 43.24	0	1164277..1165689	+	470	29346364	-	BT_0954	-	hypothetical protein
955	 45.66	0	1165696..1166685	+	329	29346365	-	BT_0955	-	hypothetical protein
956	 43.80	0	1166690..1167874	+	394	29346366	-	BT_0956	-	putative transmembrane protein
957	 42.22	0	1167858..1169027	+	389	29346367	-	BT_0957	-	hypothetical protein
958	 37.02	-1	1169220..1173209	+	1329	29346368	-	BT_0958	-	two-component system sensor histidine kinase/response regulator, hybrid ('one component system')
959	 42.94	0	1173269..1173778	-	169	29346369	-	BT_0959	-	hypothetical protein
960	 44.35	0	1173791..1175632	-	613	29346370	-	BT_0960	-	putative TonB-dependent outer membrane receptor
961	 43.68	0	1175706..1176140	-	144	29346371	-	BT_0961	-	hypothetical protein
962	 44.80	0	1176140..1177543	-	467	29346372	-	BT_0962	-	aldo/keto reductase
963	 46.52	0	1177563..1179071	-	502	29346373	-	BT_0963	-	putative ferredoxin-type protein
964	 41.16	0	1179568..1181970	-	800	29346374	-	BT_0964	-	hypothetical protein
965	 39.79	0	1182131..1183105	-	324	29346375	-	BT_0965	-	putative anti-sigma factor
966	 35.87	-1	1183169..1183720	-	183	29346376	-	BT_0966	-	RNA polymerase ECF-type sigma factor
967	 33.33	-1	1183815..1184036	-	73	29346377	-	BT_0967	-	hypothetical protein
968	 43.29	0	1184080..1187214	-	1044	29346378	-	BT_0968	-	hypothetical protein
969	 40.68	0	1187356..1188444	-	362	29346379	-	BT_0969	-	hypothetical protein
970	 42.67	0	1188745..1189365	+	206	29346380	-	BT_0970	-	haloacid dehalogenase-like hydrolase
971	 42.48	0	1189438..1190235	-	265	29346381	-	BT_0971	-	hypothetical protein
972	 44.20	0	1190382..1191191	+	269	29346382	-	BT_0972	-	putative oxidoreductase
973	 41.84	0	1191305..1192033	-	242	29346383	-	BT_0973	-	hypothetical protein
974	 44.85	0	1192047..1192541	-	164	29346384	-	BT_0974	-	putative integral membrane protein
975	 41.67	0	1192543..1193310	-	255	29346385	-	BT_0975	-	putative integral membrane protein
976	 43.30	0	1193416..1194669	+	417	29346386	-	BT_0976	-	putative transport protein
977	 40.87	0	1194776..1195027	-	83	29346387	-	BT_0977	-	hypothetical protein
978	 37.80	-1	1195110..1195601	-	163	29346388	-	BT_0978	-	ECF-type sigma factor
979	 45.99	0	1195838..1198933	-	1031	29346389	-	BT_0979	-	hypothetical protein
980	 45.87	0	1199001..1200683	-	560	29346390	-	BT_0980	-	hypothetical protein
981	 43.79	0	1200747..1205165	-	1472	29346391	-	BT_0981	-	two-component system sensor histidine kinase/response regulator, hybrid ('one component system')
982	 31.75	-2	1205423..1205674	-	83	29346392	-	BT_0982	-	hypothetical protein
983	 48.40	0	1205904..1208552	-	882	29346393	-	BT_0983	-	beta-galactosidase
984	 46.85	0	1208581..1210992	-	803	29346394	-	BT_0984	-	hypothetical protein
985	 45.82	0	1211002..1212435	-	477	29346395	-	BT_0985	-	putative sialic acid-specific acetylesterase II
986	 46.50	0	1212438..1215755	-	1105	29346396	-	BT_0986	-	putative DNA-binding protein
987	 37.69	-1	1215879..1217393	-	504	29346397	-	BT_0987	-	putative cytochrome C-type biogenesis protein
988	 42.31	0	1217557..1220208	-	883	29346398	-	BT_0988	-	Mg2+ transport ATPase protein B
989	 43.06	0	1220329..1221696	-	455	29346399	-	BT_0989	-	two-component system sensor histidine kinase
990	 41.78	0	1221693..1222379	-	228	29346400	-	BT_0990	-	two-component system response regulator
991	 40.46	0	1222442..1222918	+	158	29346401	-	BT_0991	-	hypothetical protein
992	 45.78	0	1222940..1225792	-	950	29346402	-	BT_0992	-	beta-galactosidase
993	 45.20	0	1225844..1229122	-	1092	29346403	-	BT_0993	-	beta-galactosidase
994	 39.40	0	1229478..1230977	+	499	29346404	-	BT_0994	-	two-component system histidine kinase
995	 36.64	-1	1230974..1231819	-	281	29346405	-	BT_0995	-	transcription regulator, AraC-type
996	 45.64	0	1232033..1236289	-	1418	29346406	-	BT_0996	-	beta-galactosidase
997	 46.26	0	1236402..1239023	-	873	29346407	-	BT_0997	-	hypothetical protein
998	 40.40	0	1239321..1241753	+	810	29346408	-	BT_0998	-	two-component system sensor histidine kinase
999	 44.14	0	1241793..1242338	+	181	29346409	-	BT_0999	-	putative acetyltransferase
1000	 39.81	0	1242821..1245229	-	802	29346410	-	BT_1000	-	hypothetical protein
1001	 44.43	0	1245435..1247624	-	729	29346411	-	BT_1001	-	putative alpha-rhamnosidase
1002	 49.46	+1	1247645..1249504	-	619	29346412	-	BT_1002	-	hypothetical protein
1003	 46.83	0	1249524..1251620	-	698	29346413	-	BT_1003	-	hypothetical protein
1004	 43.80	0	1251756..1252529	-	257	29346414	-	BT_1004	-	hypothetical protein
1005	 38.76	0	1252943..1253200	+	85	29346415	-	BT_1005	-	hypothetical protein
1006	 41.43	0	1253227..1253955	-	242	29346416	-	BT_1006	-	putative nitroreductase
1007	 40.15	0	1254189..1254980	-	263	29346417	-	BT_1007	-	hypothetical protein
1008	 42.33	0	1255047..1255835	-	262	29346418	-	BT_1008	-	xylanase
1009	 42.81	0	1255841..1256779	-	312	29346419	-	BT_1009	-	dihydroorotate dehydrogenase 2
1010	 47.27	0	1257062..1259536	+	824	29346420	-	BT_1010	-	hypothetical protein
1011	 45.14	0	1259550..1260752	+	400	29346421	-	BT_1011	-	hypothetical protein
1012	 45.59	0	1260789..1262240	+	483	29346422	-	BT_1012	-	hypothetical protein
1013	 46.76	0	1262233..1266105	+	1290	29346423	-	BT_1013	-	putative alpha-rhamnosidase
1014	 41.09	0	1266184..1267704	-	506	29346424	-	BT_1014	-	hypothetical protein
1015	 41.10	0	1268256..1269143	+	295	29346425	-	BT_1015	-	putative oxidoreductase
1016	 43.04	0	1269131..1269913	-	260	29346426	-	BT_1016	-	hypothetical protein
1017	 43.63	0	1270084..1272045	-	653	29346427	-	BT_1017	-	hypothetical protein
1018	 43.20	0	1272083..1273420	-	445	29346428	-	BT_1018	-	polygalacturonase (Pectinase)
1019	 44.37	0	1273457..1276228	-	923	29346429	-	BT_1019	-	putative secreted hydrolase
1020	 44.02	0	1276351..1279680	-	1109	29346430	-	BT_1020	-	hypothetical protein
1021	 42.61	0	1279732..1280583	-	283	29346431	-	BT_1021	-	arabinosidase
1022	 42.30	0	1280905..1281573	-	222	29346432	-	BT_1022	-	hypothetical protein
1023	 42.30	0	1281647..1283386	-	579	29346433	-	BT_1023	-	hypothetical protein
1024	 36.81	-1	1283613..1285910	-	765	29346434	-	BT_1024	-	hypothetical protein
1025	 36.63	-1	1285897..1289205	-	1102	29346435	-	BT_1025	-	hypothetical protein
1026	 32.50	-2	1289238..1290683	-	481	29346436	-	BT_1026	-	hypothetical protein
1027	 31.18	-2	1290776..1290961	-	61	29346437	-	BT_1027	-	hypothetical protein
1028	 43.82	0	1291332..1293506	-	724	29346438	-	BT_1028	-	hypothetical protein
1029	 40.98	0	1293560..1296868	-	1102	29346439	-	BT_1029	-	hypothetical protein
1030	 38.28	0	1296898..1298373	-	491	29346440	-	BT_1030	-	hypothetical protein
1031	 39.71	0	1298901..1299794	-	297	29346441	-	BT_1031	-	hypothetical protein
1032	 42.62	0	1300094..1302364	-	756	29346442	-	BT_1032	-	hypothetical protein
1033	 43.34	0	1302372..1303340	-	322	29346443	-	BT_1033	-	hypothetical protein
1034	 40.02	0	1303393..1304724	-	443	29346444	-	BT_1034	-	putative signal transducer
1035	 41.77	0	1304823..1307027	-	734	29346445	-	BT_1035	-	hypothetical protein
1036	 34.96	-1	1307194..1308543	-	449	29346446	-	BT_1036	-	hypothetical protein
1037	 36.03	-1	1308560..1309747	-	395	29346447	-	BT_1037	-	hypothetical protein
1038	 40.66	0	1309791..1310813	-	340	29346448	-	BT_1038	-	hypothetical protein
1039	 37.82	-1	1310840..1312423	-	527	29346449	-	BT_1039	-	hypothetical protein
1040	 37.35	-1	1312432..1315194	-	920	29346450	-	BT_1040	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.