IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
918	 45.41	0	1128888..1129781	-	297	29346328	-	BT_0918	-	integrase
919	 41.67	0	1129814..1130161	-	115	29346329	-	BT_0919	-	hypothetical protein
920	 44.80	0	1130452..1131471	-	339	29346330	-	BT_0920	-	putative O-sialoglycoprotein endopeptidase
921	 43.68	0	1131672..1136126	+	1484	29346331	-	BT_0921	-	hypothetical protein
922	 45.12	0	1136175..1137056	-	293	29346332	-	BT_0922	-	hypothetical protein
923	 37.67	-1	1137080..1137517	-	145	29346333	-	BT_0923	-	putative periplasmic protein
924	 43.66	0	1137748..1138899	+	383	29346334	-	BT_0924	-	hypothetical protein
925	 44.62	0	1138903..1139646	+	247	29346335	-	BT_0925	-	ABC transporter, ATP-binding protein
926	 44.10	0	1139639..1140595	+	318	29346336	-	BT_0926	-	ABC-type transport, permease protein
927	 40.61	0	1140721..1141998	-	425	29346337	-	BT_0927	-	two-component system sensor histidine kinase
928	 39.97	0	1142021..1142698	-	225	29346338	-	BT_0928	-	two-component system response regulator
929	 43.64	0	1142831..1144324	-	497	29346339	-	BT_0929	-	prolyl-tRNA synthetase
930	 29.35	-2	1144874..1145074	+	66	29346340	-	BT_0930	-	hypothetical protein
931	 33.33	-1	1145130..1145774	-	214	29346341	-	BT_0931	-	hypothetical protein
932	 36.29	-1	1146389..1146760	+	123	29346342	-	BT_0932	-	hypothetical protein
933	 25.27	-2	1147068..1147253	-	61	29346343	-	BT_0933	-	hypothetical protein
934	 31.62	-2	1147250..1147540	-	96	29346344	-	BT_0934	-	hypothetical protein
935	 35.56	-1	1147613..1147837	-	74	29346345	-	BT_0935	-	hypothetical protein
936	 35.31	-1	1148014..1148316	+	100	29346346	-	BT_0936	-	hypothetical protein
937	 30.95	-2	1148323..1148574	-	83	29346347	-	BT_0937	-	hypothetical protein
938	 33.33	-1	1148954..1149313	+	119	29346348	-	BT_0938	-	hypothetical protein
939	 33.73	-1	1149490..1149741	-	83	29346349	-	BT_0939	-	hypothetical protein
940	 31.40	-2	1149936..1150400	-	154	29346350	-	BT_0940	-	hypothetical protein
941	 31.06	-2	1150617..1150880	-	87	29346351	-	BT_0941	-	hypothetical protein
942	 36.63	-1	1151297..1152085	-	262	29346352	-	BT_0942	-	putative dinitrogenase reductase activating glycohydrolase
943	 37.32	-1	1152317..1153219	-	300	29346353	-	BT_0943	-	penicillin-binding protein 2B (PBP-2B)
944	 30.70	-2	1153416..1153757	-	113	29346354	-	BT_0944	-	hypothetical protein
945	 32.49	-2	1153770..1154243	-	157	29346355	-	BT_0945	-	hypothetical protein
946	 31.73	-2	1155235..1155981	+	248	29346356	-	BT_0946	-	hypothetical protein
947	 34.52	-1	1156037..1156624	-	195	29346357	-	BT_0947	-	integrase
948	 38.15	-1	1156970..1157986	-	338	29346358	-	BT_0948	-	hypothetical protein
949	 38.60	0	1158487..1158714	-	75	29346359	-	BT_0949	-	hypothetical protein
950	 36.68	-1	1158701..1160494	-	597	29346360	-	BT_0950	-	hypothetical protein
951	 41.88	0	1160570..1161049	-	159	29346361	-	BT_0951	-	hypothetical protein
952	 35.64	-1	1161223..1162047	-	274	29346362	-	BT_0952	-	hypothetical protein
953	 32.63	-2	1162125..1163114	-	329	29346363	-	BT_0953	-	integrase
954	 43.24	0	1164277..1165689	+	470	29346364	-	BT_0954	-	hypothetical protein
955	 45.66	0	1165696..1166685	+	329	29346365	-	BT_0955	-	hypothetical protein
956	 43.80	0	1166690..1167874	+	394	29346366	-	BT_0956	-	putative transmembrane protein
957	 42.22	0	1167858..1169027	+	389	29346367	-	BT_0957	-	hypothetical protein
958	 37.02	-1	1169220..1173209	+	1329	29346368	-	BT_0958	-	two-component system sensor histidine kinase/response regulator, hybrid ('one component system')
959	 42.94	0	1173269..1173778	-	169	29346369	-	BT_0959	-	hypothetical protein
960	 44.35	0	1173791..1175632	-	613	29346370	-	BT_0960	-	putative TonB-dependent outer membrane receptor
961	 43.68	0	1175706..1176140	-	144	29346371	-	BT_0961	-	hypothetical protein
962	 44.80	0	1176140..1177543	-	467	29346372	-	BT_0962	-	aldo/keto reductase
963	 46.52	0	1177563..1179071	-	502	29346373	-	BT_0963	-	putative ferredoxin-type protein
964	 41.16	0	1179568..1181970	-	800	29346374	-	BT_0964	-	hypothetical protein
965	 39.79	0	1182131..1183105	-	324	29346375	-	BT_0965	-	putative anti-sigma factor
966	 35.87	-1	1183169..1183720	-	183	29346376	-	BT_0966	-	RNA polymerase ECF-type sigma factor
967	 33.33	-1	1183815..1184036	-	73	29346377	-	BT_0967	-	hypothetical protein
968	 43.29	0	1184080..1187214	-	1044	29346378	-	BT_0968	-	hypothetical protein
969	 40.68	0	1187356..1188444	-	362	29346379	-	BT_0969	-	hypothetical protein
970	 42.67	0	1188745..1189365	+	206	29346380	-	BT_0970	-	haloacid dehalogenase-like hydrolase
971	 42.48	0	1189438..1190235	-	265	29346381	-	BT_0971	-	hypothetical protein
972	 44.20	0	1190382..1191191	+	269	29346382	-	BT_0972	-	putative oxidoreductase
973	 41.84	0	1191305..1192033	-	242	29346383	-	BT_0973	-	hypothetical protein
974	 44.85	0	1192047..1192541	-	164	29346384	-	BT_0974	-	putative integral membrane protein
975	 41.67	0	1192543..1193310	-	255	29346385	-	BT_0975	-	putative integral membrane protein
976	 43.30	0	1193416..1194669	+	417	29346386	-	BT_0976	-	putative transport protein
977	 40.87	0	1194776..1195027	-	83	29346387	-	BT_0977	-	hypothetical protein
978	 37.80	-1	1195110..1195601	-	163	29346388	-	BT_0978	-	ECF-type sigma factor
979	 45.99	0	1195838..1198933	-	1031	29346389	-	BT_0979	-	hypothetical protein
980	 45.87	0	1199001..1200683	-	560	29346390	-	BT_0980	-	hypothetical protein
981	 43.79	0	1200747..1205165	-	1472	29346391	-	BT_0981	-	two-component system sensor histidine kinase/response regulator, hybrid ('one component system')
982	 31.75	-2	1205423..1205674	-	83	29346392	-	BT_0982	-	hypothetical protein
983	 48.40	0	1205904..1208552	-	882	29346393	-	BT_0983	-	beta-galactosidase
984	 46.85	0	1208581..1210992	-	803	29346394	-	BT_0984	-	hypothetical protein
985	 45.82	0	1211002..1212435	-	477	29346395	-	BT_0985	-	putative sialic acid-specific acetylesterase II
986	 46.50	0	1212438..1215755	-	1105	29346396	-	BT_0986	-	putative DNA-binding protein
987	 37.69	-1	1215879..1217393	-	504	29346397	-	BT_0987	-	putative cytochrome C-type biogenesis protein
988	 42.31	0	1217557..1220208	-	883	29346398	-	BT_0988	-	Mg2+ transport ATPase protein B
989	 43.06	0	1220329..1221696	-	455	29346399	-	BT_0989	-	two-component system sensor histidine kinase
990	 41.78	0	1221693..1222379	-	228	29346400	-	BT_0990	-	two-component system response regulator
991	 40.46	0	1222442..1222918	+	158	29346401	-	BT_0991	-	hypothetical protein
992	 45.78	0	1222940..1225792	-	950	29346402	-	BT_0992	-	beta-galactosidase
993	 45.20	0	1225844..1229122	-	1092	29346403	-	BT_0993	-	beta-galactosidase
994	 39.40	0	1229478..1230977	+	499	29346404	-	BT_0994	-	two-component system histidine kinase
995	 36.64	-1	1230974..1231819	-	281	29346405	-	BT_0995	-	transcription regulator, AraC-type
996	 45.64	0	1232033..1236289	-	1418	29346406	-	BT_0996	-	beta-galactosidase
997	 46.26	0	1236402..1239023	-	873	29346407	-	BT_0997	-	hypothetical protein
998	 40.40	0	1239321..1241753	+	810	29346408	-	BT_0998	-	two-component system sensor histidine kinase
999	 44.14	0	1241793..1242338	+	181	29346409	-	BT_0999	-	putative acetyltransferase
1000	 39.81	0	1242821..1245229	-	802	29346410	-	BT_1000	-	hypothetical protein
1001	 44.43	0	1245435..1247624	-	729	29346411	-	BT_1001	-	putative alpha-rhamnosidase
1002	 49.46	+1	1247645..1249504	-	619	29346412	-	BT_1002	-	hypothetical protein
1003	 46.83	0	1249524..1251620	-	698	29346413	-	BT_1003	-	hypothetical protein
1004	 43.80	0	1251756..1252529	-	257	29346414	-	BT_1004	-	hypothetical protein
1005	 38.76	0	1252943..1253200	+	85	29346415	-	BT_1005	-	hypothetical protein
1006	 41.43	0	1253227..1253955	-	242	29346416	-	BT_1006	-	putative nitroreductase
1007	 40.15	0	1254189..1254980	-	263	29346417	-	BT_1007	-	hypothetical protein
1008	 42.33	0	1255047..1255835	-	262	29346418	-	BT_1008	-	xylanase
1009	 42.81	0	1255841..1256779	-	312	29346419	-	BT_1009	-	dihydroorotate dehydrogenase 2
1010	 47.27	0	1257062..1259536	+	824	29346420	-	BT_1010	-	hypothetical protein
1011	 45.14	0	1259550..1260752	+	400	29346421	-	BT_1011	-	hypothetical protein
1012	 45.59	0	1260789..1262240	+	483	29346422	-	BT_1012	-	hypothetical protein
1013	 46.76	0	1262233..1266105	+	1290	29346423	-	BT_1013	-	putative alpha-rhamnosidase
1014	 41.09	0	1266184..1267704	-	506	29346424	-	BT_1014	-	hypothetical protein
1015	 41.10	0	1268256..1269143	+	295	29346425	-	BT_1015	-	putative oxidoreductase
1016	 43.04	0	1269131..1269913	-	260	29346426	-	BT_1016	-	hypothetical protein
1017	 43.63	0	1270084..1272045	-	653	29346427	-	BT_1017	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.