IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
837	 43.70	0	1032027..1033907	-	626	29346247	-	BT_0837	-	ATP-dependent protease
838	 43.80	0	1034109..1034834	+	241	29346248	-	BT_0838	-	putative RNA methyltransferase
839	 32.61	-2	1035178..1035453	+	91	29346249	-	BT_0839	-	hypothetical protein
840	 31.35	-2	1035447..1036151	-	234	29346250	-	BT_0840	-	hypothetical protein
841	 29.49	-2	1036185..1036886	-	233	29346251	-	BT_0841	-	hypothetical protein
842	 31.75	-2	1036966..1037154	-	62	29346252	-	BT_0842	-	hypothetical protein
843	 34.17	-1	1037190..1037546	-	118	29346253	-	BT_0843	-	hypothetical protein
844	 30.42	-2	1037548..1037925	-	125	29346254	-	BT_0844	-	hypothetical protein
845	 30.57	-2	1037991..1038497	-	168	29346255	-	BT_0845	-	hypothetical protein
846	 33.89	-1	1038548..1038907	-	119	29346256	-	BT_0846	-	hypothetical protein
847	 35.90	-1	1039101..1039295	+	64	29346257	-	BT_0847	-	hypothetical protein
848	 31.51	-2	1039292..1039510	-	72	29346258	-	BT_0848	-	hypothetical protein
849	 38.83	0	1039627..1039917	+	96	29346259	-	BT_0849	-	hypothetical protein
850	 36.19	-1	1039914..1040438	+	174	29346260	-	BT_0850	-	putative transcriptional regulator
851	 38.93	0	1040515..1040889	+	124	29346261	-	BT_0851	-	hypothetical protein
852	 34.57	-1	1040886..1041128	+	80	29346262	-	BT_0852	-	hypothetical protein
853	 40.21	0	1041653..1042408	-	251	29346263	-	BT_0853	-	putative methyltransferase
854	 37.44	-1	1042538..1042732	+	64	29346264	-	BT_0854	-	hypothetical protein
855	 39.67	0	1043365..1044642	-	425	29346265	-	BT_0855	-	two-component system sensor histidine kinase
856	 43.72	0	1044639..1046015	-	458	29346266	-	BT_0856	-	two-component system response regulator
857	 43.31	0	1046230..1047702	+	490	29346267	-	BT_0857	-	outer membrane protein TolC, putative
858	 43.09	0	1047752..1049002	+	416	29346268	-	BT_0858	-	hypothetical protein
859	 37.25	-1	1049017..1051392	+	791	29346269	-	BT_0859	-	hypothetical protein
860	 43.11	0	1051442..1052116	+	224	29346270	-	BT_0860	-	putative ABC transporter ATP-binding protein
861	 41.01	0	1052134..1054479	+	781	29346271	-	BT_0861	-	putative ABC transporter permease
862	 37.40	-1	1054495..1056828	+	777	29346272	-	BT_0862	-	putative ABC-transporter permease protein
863	 41.47	0	1056852..1059260	+	802	29346273	-	BT_0863	-	hypothetical protein
864	 42.11	0	1059288..1061645	+	785	29346274	-	BT_0864	-	putative permease
865	 43.84	0	1061861..1063183	-	440	29346275	-	BT_0865	-	putative chitobiase
866	 45.97	0	1063214..1065112	-	632	29346276	-	BT_0866	-	hypothetical protein
867	 44.54	0	1065133..1068345	-	1070	29346277	-	BT_0867	-	hypothetical protein
868	 43.23	0	1069072..1069455	+	127	29346278	-	BT_0868	-	hypothetical protein
869	 42.82	0	1069481..1069828	+	115	29346279	-	BT_0869	-	hypothetical protein
870	 45.65	0	1069916..1071100	-	394	29346280	-	BT_0870	-	8-amino-7-oxononanoate synthase
871	 43.20	0	1071333..1072346	+	337	29346281	-	BT_0871	-	hypothetical protein
872	 45.98	0	1072422..1074185	+	587	29346282	aspS	BT_0872	-	aspartyl-tRNA synthetase
873	 41.78	0	1074339..1076126	+	595	29346283	-	BT_0873	-	putative sulfatase
874	 37.68	-1	1076168..1076512	+	114	29346284	-	BT_0874	-	hypothetical protein
875	 49.04	+1	1076614..1077498	-	294	29346285	-	BT_0875	-	beta-ureidopropionase
876	 48.03	0	1077535..1078650	-	371	29346286	-	BT_0876	-	hypothetical protein
877	 48.25	0	1078721..1079263	-	180	29346287	-	BT_0877	-	ferredoxin domain-containing protein
878	 44.61	0	1079350..1079970	+	206	29346288	-	BT_0878	-	ABC transporter, ATP-binding protein
879	 39.01	0	1080131..1080799	+	222	29346289	-	BT_0879	-	ABC transporter, permease protein
880	 39.43	0	1080796..1081074	+	92	29346290	-	BT_0880	-	hypothetical protein
881	 37.65	-1	1081109..1081525	-	138	29346291	-	BT_0881	-	hypothetical protein
882	 41.83	0	1081632..1082726	+	364	29346292	-	BT_0882	-	hypothetical protein
883	 41.40	0	1082732..1083562	+	276	29346293	-	BT_0883	-	hypothetical protein
884	 44.49	0	1083700..1085097	+	465	29346294	-	BT_0884	-	outer membrane efflux protein oprM precursor
885	 45.17	0	1085143..1086240	+	365	29346295	-	BT_0885	-	putative cation efflux pump
886	 45.25	0	1086323..1089469	+	1048	29346296	-	BT_0886	-	putative cation efflux pump
887	 40.67	0	1089593..1090042	-	149	29346297	-	BT_0887	-	hypothetical protein
888	 41.57	0	1090106..1090882	+	258	29346298	-	BT_0888	-	AMP nucleosidase
889	 39.51	0	1090908..1091927	+	339	29346299	-	BT_0889	-	hypothetical protein
890	 36.09	-1	1093156..1093626	+	156	29346300	-	BT_0890	-	hypothetical protein
891	 39.51	0	1093702..1094478	+	258	29346301	-	BT_0891	-	dihydroorotate dehydrogenase electron transfer subunit
892	 41.34	0	1094466..1095377	+	303	29346302	-	BT_0892	-	dihydroorotate dehydrogenase
893	 44.40	0	1095596..1096273	-	225	29346303	trmD	BT_0893	-	tRNA (guanine-N(1)-)-methyltransferase
894	 41.58	0	1096350..1098350	+	666	29346304	-	BT_0894	-	DNA ligase
895	 40.04	0	1098410..1099303	+	297	29346305	-	BT_0895	-	dihydrodipicolinate synthase
896	 39.35	0	1100188..1102446	-	752	29346306	-	BT_0896	-	putative patatin-like phospholipase
897	 38.81	0	1102658..1104703	-	681	29346307	-	BT_0897	-	heat shock protein 90
898	 42.16	0	1104843..1107368	-	841	29346308	-	BT_0898	-	ATP-dependent Clp protease
899	 39.89	0	1107775..1110351	+	858	29346309	-	BT_0899	-	DNA gyrase subunit A
900	 35.17	-1	1110405..1111601	+	398	29346310	-	BT_0900	-	TPR repeat-containing protein
901	 34.58	-1	1111827..1112948	-	373	29346311	-	BT_0901	-	putative universal stress protein UspA
902	 40.55	0	1113022..1113312	-	96	29346312	-	BT_0902	-	hypothetical protein
903	 37.29	-1	1113446..1114279	-	277	29346313	-	BT_0903	-	hypothetical protein
904	 39.52	0	1114298..1116124	-	608	29346314	-	BT_0904	-	hypothetical protein
905	 40.05	0	1116159..1116887	-	242	29346315	-	BT_0905	-	hypothetical protein
906	 42.47	0	1116891..1117919	-	342	29346316	-	BT_0906	-	hypothetical protein
907	 40.85	0	1117964..1118947	-	327	29346317	-	BT_0907	-	aerotolerance protein BatA
908	 39.30	0	1118992..1120080	-	362	29346318	-	BT_0908	-	hypothetical protein
909	 42.07	0	1120080..1120949	-	289	29346319	-	BT_0909	-	hypothetical protein
910	 44.48	0	1121037..1122032	-	331	29346320	-	BT_0910	-	magnesium chelatase, subunit I
911	 42.14	0	1122272..1123735	-	487	29346321	-	BT_0911	-	putative integration host factor IHF alpha subunit
912	 41.03	0	1123751..1124023	-	90	29346322	-	BT_0912	-	DNA-binding protein HU
913	 43.10	0	1124016..1125326	-	436	29346323	-	BT_0913	-	putative Fe-S oxidoreductase
914	 43.75	0	1125323..1126282	-	319	29346324	-	BT_0914	-	recognition particle-docking protein FtsY
915	 36.51	-1	1126596..1126784	-	62	29346325	rpmG	BT_0915	-	50S ribosomal protein L33
916	 37.93	-1	1126806..1127066	-	86	29346326	rpmB	BT_0916	-	50S ribosomal protein L28
917	 47.29	0	1127189..1128349	-	386	29346327	-	BT_0917	-	competence-damage inducible protein
918	 45.41	0	1128888..1129781	-	297	29346328	-	BT_0918	-	integrase
919	 41.67	0	1129814..1130161	-	115	29346329	-	BT_0919	-	hypothetical protein
920	 44.80	0	1130452..1131471	-	339	29346330	-	BT_0920	-	putative O-sialoglycoprotein endopeptidase
921	 43.68	0	1131672..1136126	+	1484	29346331	-	BT_0921	-	hypothetical protein
922	 45.12	0	1136175..1137056	-	293	29346332	-	BT_0922	-	hypothetical protein
923	 37.67	-1	1137080..1137517	-	145	29346333	-	BT_0923	-	putative periplasmic protein
924	 43.66	0	1137748..1138899	+	383	29346334	-	BT_0924	-	hypothetical protein
925	 44.62	0	1138903..1139646	+	247	29346335	-	BT_0925	-	ABC transporter, ATP-binding protein
926	 44.10	0	1139639..1140595	+	318	29346336	-	BT_0926	-	ABC-type transport, permease protein
927	 40.61	0	1140721..1141998	-	425	29346337	-	BT_0927	-	two-component system sensor histidine kinase
928	 39.97	0	1142021..1142698	-	225	29346338	-	BT_0928	-	two-component system response regulator
929	 43.64	0	1142831..1144324	-	497	29346339	-	BT_0929	-	prolyl-tRNA synthetase
930	 29.35	-2	1144874..1145074	+	66	29346340	-	BT_0930	-	hypothetical protein
931	 33.33	-1	1145130..1145774	-	214	29346341	-	BT_0931	-	hypothetical protein
932	 36.29	-1	1146389..1146760	+	123	29346342	-	BT_0932	-	hypothetical protein
933	 25.27	-2	1147068..1147253	-	61	29346343	-	BT_0933	-	hypothetical protein
934	 31.62	-2	1147250..1147540	-	96	29346344	-	BT_0934	-	hypothetical protein
935	 35.56	-1	1147613..1147837	-	74	29346345	-	BT_0935	-	hypothetical protein
936	 35.31	-1	1148014..1148316	+	100	29346346	-	BT_0936	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.