IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3252	 51.76	+1	4152166..4153440	-	424	29348662	-	BT_3253	-	phosphoribosylamine--glycine ligase
3253	 51.57	+1	4153514..4155712	-	732	29348663	-	BT_3254	-	dipeptidyl peptidase IV
3254	 47.41	0	4155921..4157390	-	489	29348664	-	BT_3255	-	putative N6-adenine-specific DNA methylase
3255	 48.28	0	4157407..4158309	-	300	29348665	-	BT_3256	-	serine acetyltransferase
3256	 45.70	0	4158388..4160466	+	692	29348666	-	BT_3257	-	putative two-component system sensor histidine kinase
3257	 44.10	0	4160463..4161242	+	259	82775345	-	BT_3258	-	two-component system response regulator
3258	 37.12	-1	4161350..4161745	-	131	29348668	-	BT_3259	-	hypothetical protein
3259	 47.09	0	4162078..4164927	-	949	29348669	-	BT_3260	-	DNA polymerase I
3260	 45.33	0	4165016..4165990	+	324	29348670	-	BT_3261	-	octaprenyl-diphosphate synthase
3261	 44.49	0	4165991..4166671	-	226	29348671	-	BT_3262	-	hypothetical protein
3262	 45.85	0	4167078..4167980	-	300	29348672	-	BT_3263	-	putative deoxyribose-phosphate aldolase
3263	 44.54	0	4167967..4168305	-	112	29348673	-	BT_3264	-	hypothetical protein
3264	 45.25	0	4168394..4168846	-	150	29348674	-	BT_3265	-	D-tyrosyl-tRNA deacylase
3265	 43.93	0	4169331..4171160	-	609	29348675	-	BT_3266	-	excinuclease ABC subunit C
3266	 43.69	0	4171236..4171766	-	176	29348676	-	BT_3267	-	adenine phosphoribosyltransferase
3267	 49.23	+1	4171817..4173703	-	628	29348677	-	BT_3268	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3268	 42.23	0	4174538..4175110	+	190	29348678	-	BT_3269	-	RNA polymerase ECF-type sigma factor
3269	 43.26	0	4175626..4176834	+	402	29348679	-	BT_3270	-	putative anti-sigma factor
3270	 38.56	0	4176858..4180208	+	1116	29348680	-	BT_3271	-	hypothetical protein
3271	 33.54	-1	4180222..4181688	+	488	29348681	-	BT_3272	-	putative outer membrane protein
3272	 33.05	-1	4181715..4182425	+	236	29348682	-	BT_3273	-	hypothetical protein
3273	 35.64	-1	4182472..4184076	+	534	29348683	-	BT_3274	-	hypothetical protein
3274	 43.79	0	4184142..4186724	+	860	29348684	-	BT_3275	-	hypothetical protein
3275	 43.31	0	4186733..4189339	+	868	29348685	-	BT_3276	-	hypothetical protein
3276	 38.07	-1	4189602..4190171	+	189	29348686	-	BT_3277	-	RNA polymerase ECF-type sigma factor
3277	 42.11	0	4190370..4191554	+	394	29348687	-	BT_3278	-	putative anti-sigma factor
3278	 40.46	0	4191588..4195136	+	1182	29348688	-	BT_3279	-	hypothetical protein
3279	 40.48	0	4195143..4196612	+	489	29348689	-	BT_3280	-	hypothetical protein
3280	 36.78	-1	4196619..4197518	+	299	29348690	-	BT_3281	-	hypothetical protein
3281	 41.41	0	4197538..4200087	+	849	29348691	-	BT_3282	-	hypothetical protein
3282	 43.96	0	4200181..4200594	-	137	29348692	-	BT_3283	-	hypothetical protein
3283	 47.53	0	4200610..4201842	-	410	29348693	-	BT_3284	-	hypothetical protein
3284	 49.03	+1	4202455..4203486	+	343	29348694	ruvB	BT_3285	-	Holliday junction DNA helicase B
3285	 48.05	0	4203593..4204360	+	255	29348695	-	BT_3286	-	hypothetical protein
3286	 41.34	0	4204396..4205844	+	482	29348696	-	BT_3287	-	polysaccharide biosynthesis protein
3287	 46.17	0	4205847..4207202	+	451	29348697	-	BT_3288	-	putative integral membrane protein
3288	 46.41	0	4207249..4209390	+	713	29348698	-	BT_3289	-	hypothetical protein
3289	 46.71	0	4209423..4210289	-	288	29348699	-	BT_3290	-	hypothetical protein
3290	 40.47	0	4210564..4212777	+	737	29348700	-	BT_3291	-	hypothetical protein
3291	 44.20	0	4212870..4214645	-	591	29348701	-	BT_3292	-	beta-glucuronidase
3292	 41.16	0	4214913..4219178	+	1421	29348702	-	BT_3293	-	beta-galactosidase
3293	 40.55	0	4219281..4221233	-	650	29348703	-	BT_3294	-	putative alpha-glucosidase
3294	 37.11	-1	4221509..4222513	-	334	29348704	-	BT_3295	-	hypothetical protein
3295	 37.93	-1	4222532..4224556	-	674	29348705	-	BT_3296	-	putative outer membrane protein
3296	 38.07	-1	4224567..4227647	-	1026	29348706	-	BT_3297	-	hypothetical protein
3297	 39.70	0	4227668..4229080	-	470	29348707	-	BT_3298	-	hypothetical protein
3298	 43.47	0	4229123..4231174	-	683	29348708	-	BT_3299	-	alpha-glucosidase II
3299	 40.92	0	4231298..4233775	-	825	29348709	-	BT_3300	-	beta-glucosidase
3300	 39.14	0	4233887..4235074	-	395	29348710	-	BT_3301	-	putative alpha-1,6-mannanase
3301	 41.33	0	4235444..4239544	+	1366	29348711	-	BT_3302	-	two-component system sensor histidine kinase/response regulator, hybrid ('one-component system')
3302	 49.90	+1	4240031..4241974	-	647	29348712	-	BT_3303	-	ATP-dependent RNA helicase
3303	 46.31	0	4242086..4243156	-	356	29348713	-	BT_3304	-	hypothetical protein
3304	 45.85	0	4243275..4244201	-	308	29348714	-	BT_3305	-	fructokinase
3305	 48.02	0	4244189..4244794	-	201	29348715	-	BT_3306	-	putative sugar isomerase
3306	 45.27	0	4244799..4245284	-	161	29348716	-	BT_3307	-	lysine decarboxylase
3307	 46.44	0	4245438..4246658	+	406	29348717	-	BT_3308	-	putative zinc protease ymxG
3308	 39.11	0	4246707..4248350	+	547	29348718	-	BT_3309	-	transcriptional regulator
3309	 44.18	0	4248560..4251565	+	1001	29348719	-	BT_3310	-	hypothetical protein
3310	 45.10	0	4251580..4253100	+	506	29348720	-	BT_3311	-	hypothetical protein
3311	 44.47	0	4253159..4254649	+	496	29348721	-	BT_3312	-	glucosylceramidase precursor
3312	 43.41	0	4254672..4256675	+	667	29348722	-	BT_3313	-	hypothetical protein
3313	 46.62	0	4256693..4258987	+	764	29348723	-	BT_3314	-	thermostable beta-glucosidase B
3314	 44.27	0	4259251..4259442	+	63	29348724	-	BT_3315	-	hypothetical protein
3315	 35.76	-1	4259454..4259906	+	150	29348725	-	BT_3316	-	hypothetical protein
3316	 40.00	0	4260414..4261043	-	209	29348726	-	BT_3317	-	hypothetical protein
3317	 46.96	0	4261086..4262024	-	312	29348727	-	BT_3318	-	signal peptidase I
3318	 46.02	0	4262067..4263548	-	493	29348728	-	BT_3319	-	signal peptidase I
3319	 47.84	0	4263582..4264346	-	254	29348729	-	BT_3320	-	dihydrodipicolinate reductase
3320	 46.96	0	4264430..4265713	+	427	29348730	-	BT_3321	-	hypothetical protein
3321	 44.74	0	4265719..4268331	-	870	29348731	-	BT_3322	-	putative thioredoxin family protein
3322	 45.59	0	4268551..4269072	+	173	29348732	-	BT_3323	-	hypothetical protein
3323	 50.08	+1	4269304..4272348	+	1014	29348733	-	BT_3324	-	chondroitinase (chondroitin lyase) precursor
3324	 45.69	0	4273143..4274372	-	409	29348734	-	BT_3325	-	hypothetical protein
3325	 48.25	0	4274459..4275403	-	314	29348735	-	BT_3326	-	dihydrouridine synthase
3326	 40.53	0	4275431..4276888	-	485	29348736	-	BT_3327	-	ATP-dependent DNA helicase recG
3327	 50.52	+1	4277069..4279675	-	868	29348737	-	BT_3328	-	hypothetical protein
3328	 42.36	0	4279689..4281626	-	645	29348738	-	BT_3329	-	hypothetical protein
3329	 46.55	0	4281665..4282708	-	347	29348739	-	BT_3330	-	hypothetical protein
3330	 49.80	+1	4282742..4284460	-	572	29348740	-	BT_3331	-	hypothetical protein
3331	 49.08	+1	4284501..4287662	-	1053	29348741	-	BT_3332	-	hypothetical protein
3332	 53.06	+1	4287822..4289357	-	511	29348742	-	BT_3333	-	arylsulfatase A precursor (ASA)
3333	 47.90	0	4289657..4293721	-	1354	29348743	-	BT_3334	-	two-component system sensor histidine kinase/response regulator, hybrid ('one-component system')
3334	 44.70	0	4293833..4294474	+	213	29348744	-	BT_3335	-	hypothetical protein
3335	 43.97	0	4294535..4295305	-	256	29348745	-	BT_3336	-	UDP-N-acetylglucosamine acyltransferase
3336	 49.13	+1	4295324..4296709	-	461	29348746	-	BT_3337	-	outer membrane protein oprM precursor, multidrug resistance protein
3337	 46.49	0	4296721..4299936	-	1071	29348747	-	BT_3338	-	AcrB/AcrD family multidrug resistance protein
3338	 43.62	0	4299953..4301128	-	391	29348748	-	BT_3339	-	AcrA/AcrE family multidrug resistance protein
3339	 46.51	0	4301308..4304418	-	1036	29348749	-	BT_3340	-	beta-galactosidase
3340	 41.73	0	4304569..4306497	+	642	29348750	-	BT_3341	-	hypothetical protein
3341	 43.72	0	4306538..4307317	+	259	29348751	-	BT_3342	-	hypothetical protein
3342	 49.38	+1	4307323..4307727	-	134	29348752	-	BT_3343	-	putative phenylacetic acid degradation protein
3343	 43.92	0	4308033..4309043	-	336	29348753	-	BT_3344	-	hypothetical protein
3344	 44.41	0	4309072..4311111	-	679	29348754	-	BT_3345	-	putative outer membrane protein
3345	 46.37	0	4311134..4314217	-	1027	29348755	-	BT_3346	-	hypothetical protein
3346	 43.69	0	4314241..4315650	-	469	29348756	-	BT_3347	-	hypothetical protein
3347	 45.64	0	4316255..4317457	+	400	29348757	-	BT_3348	-	putative unsaturated glucuronyl hydrolase
3348	 48.20	0	4317564..4319090	+	508	29348758	-	BT_3349	-	putative sulfatase yidJ
3349	 46.75	0	4319229..4322090	+	953	29348759	-	BT_3350	-	putative chondroitinase (chondroitin lyase)
3350	 47.57	0	4322214..4323695	-	493	29348760	cysS	BT_3351	-	cysteinyl-tRNA synthetase
3351	 48.34	0	4323799..4324611	-	270	29348761	-	BT_3352	-	haloacid dehalogenase-like hydrolase
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.