IslandPathversion 1.0

IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.33 STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3136	 48.48	+1	4004690..4005052	+	120	29348546	-	BT_3137	-	hypothetical protein
3137	 28.61	-2	4005188..4005547	+	119	29348547	-	BT_3138	-	hypothetical protein
3138	 51.13	+1	4005823..4006131	-	102	29348548	-	BT_3139	-	hypothetical protein
3139	 51.92	+1	4006214..4006525	-	103	29348549	-	BT_3140	-	hypothetical protein
3140	 48.86	+1	4006923..4007405	+	160	29348550	-	BT_3141	-	hypothetical protein
3141	 50.48	+1	4007590..4008003	+	137	29348551	-	BT_3142	-	mobilization protein BmgB
3142	 44.58	0	4008000..4008950	+	316	29348552	-	BT_3143	-	mobilization protein BmgA
3143	 41.97	0	4008998..4009738	+	246	29348553	-	BT_3144	-	hypothetical protein
3144	 44.76	0	4010022..4010450	-	142	29348554	-	BT_3145	-	hypothetical protein
3145	 52.23	+1	4010440..4011180	-	246	29348555	-	BT_3146	-	hypothetical protein
3146	 43.70	0	4011248..4012414	-	388	29348556	-	BT_3147	-	hypothetical protein
3147	 52.59	+1	4012482..4013774	-	430	29348557	-	BT_3148	-	hypothetical protein
3148	 37.68	-1	4013993..4014268	-	91	29348558	-	BT_3149	-	hypothetical protein
3149	 42.62	0	4014407..4014880	-	157	29348559	-	BT_3150	-	transcriptional regulator
3150	 44.36	0	4014828..4015598	-	256	29348560	-	BT_3151	-	hypothetical protein
3151	 43.95	0	4015606..4017141	-	511	29348561	-	BT_3152	-	ATP-dependent DNA helicase
3152	 33.91	-1	4017138..4017482	-	114	29348562	-	BT_3153	-	hypothetical protein
3153	 35.47	-1	4017689..4018015	-	108	29348563	-	BT_3154	-	hypothetical protein
3154	 37.49	-1	4018183..4020609	+	808	29348564	-	BT_3155	-	hypothetical protein
3155	 38.41	0	4020818..4023988	+	1056	29348565	-	BT_3156	-	hypothetical protein
3156	 39.68	0	4024000..4026015	+	671	29348566	-	BT_3157	-	hypothetical protein
3157	 38.63	0	4026035..4027243	+	402	29348567	-	BT_3158	-	hypothetical protein
3158	 35.65	-1	4027264..4028556	+	430	29348568	-	BT_3159	-	hypothetical protein
3159	 37.02	-1	4028701..4030407	-	568	29348569	-	BT_3160	-	hypothetical protein
3160	 40.03	0	4030628..4031299	+	223	29348570	-	BT_3161	-	hypothetical protein
3161	 33.22	-1	4031331..4032236	+	301	29348571	-	BT_3162	-	glycerophosphoryl diester phosphodiesterase
3162	 43.11	0	4032274..4034298	+	674	29348572	-	BT_3163	-	alpha-glucosidase, putative
3163	 49.84	+1	4034454..4035392	-	312	29348573	-	BT_3164	-	quinolinate synthetase
3164	 45.27	0	4035884..4036411	+	175	29348574	-	BT_3165	-	tRNA/rRNA methyltransferase
3165	 42.41	0	4036794..4037366	-	190	29348575	-	BT_3166	-	hypothetical protein
3166	 41.63	0	4037515..4039563	+	682	29348576	-	BT_3167	-	hypothetical protein
3167	 45.35	0	4039675..4040448	+	257	29348577	-	BT_3168	-	putative Fe-S oxidoreductase
3168	 46.90	0	4040676..4044560	+	1294	29348578	-	BT_3169	-	alpha-xylosidase
3169	 43.18	0	4044771..4045532	+	253	29348579	-	BT_3170	-	hypothetical protein
3170	 47.35	0	4045654..4047087	-	477	29348580	-	BT_3171	-	sialic acid-specific 9-O-acetylesterase
3171	 45.64	0	4047270..4051202	-	1310	29348581	-	BT_3172	-	two-component system sensor histidine kinase/response regulator, hybrid ('one-component system')
3172	 47.34	0	4051327..4053774	-	815	29348582	-	BT_3173	-	hypothetical protein
3173	 43.57	0	4054467..4057769	+	1100	29348583	-	BT_3174	-	hypothetical protein
3174	 44.16	0	4057786..4059651	+	621	29348584	-	BT_3175	-	hypothetical protein
3175	 43.11	0	4059679..4061550	+	623	29348585	-	BT_3176	-	hypothetical protein
3176	 45.44	0	4061633..4063201	+	522	29348586	-	BT_3177	-	mucin-desulfating sulfatase
3177	 45.25	0	4063219..4065543	+	774	29348587	-	BT_3178	-	beta-hexosaminidase precursor
3178	 45.79	0	4065540..4068614	+	1024	29348588	-	BT_3179	-	beta-galactosidase
3179	 43.06	0	4068649..4069779	+	376	29348589	-	BT_3180	-	hypothetical protein
3180	 45.95	0	4069875..4071554	-	559	29348590	-	BT_3181	-	putative sulfate transporter, permease
3181	 44.56	0	4071799..4072377	+	192	29348591	-	BT_3182	-	rubrerythrin
3182	 37.36	-1	4072459..4072731	-	90	29348592	-	BT_3183	-	hypothetical protein
3183	 50.57	+1	4072734..4074305	-	523	29348593	-	BT_3184	-	L-aspartate oxidase
3184	 40.91	0	4074413..4074808	+	131	29348594	-	BT_3185	-	hypothetical protein
3185	 49.03	+1	4074820..4076163	+	447	29348595	-	BT_3186	-	dihydrolipoamide dehydrogenase
3186	 46.34	0	4076253..4077659	+	468	29348596	-	BT_3187	-	penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase
3187	 35.79	-1	4077808..4078989	+	393	29348597	-	BT_3188	-	hypothetical protein
3188	 37.35	-1	4079010..4080302	+	430	29348598	-	BT_3189	-	hypothetical protein
3189	 44.16	0	4080299..4080889	+	196	29348599	-	BT_3190	-	putative RNA polymerase ECF-type sigma factor
3190	 47.10	0	4080896..4081534	+	212	29348600	-	BT_3191	-	hypothetical protein
3191	 41.33	0	4081559..4082308	-	249	29348601	-	BT_3192	-	TonB
3192	 51.80	+1	4082312..4083811	-	499	29348602	-	BT_3193	-	putative coenzyme A transferase
3193	 47.41	0	4083928..4084332	+	134	29348603	-	BT_3194	-	hypothetical protein
3194	 52.92	+1	4084644..4086011	+	455	29348604	-	BT_3195	-	hypothetical protein
3195	 46.41	0	4086246..4086956	-	236	29348605	-	BT_3196	-	hypothetical protein
3196	 45.17	0	4087380..4087700	+	106	29348606	-	BT_3197	-	hypothetical protein
3197	 46.20	0	4087688..4088596	+	302	29348607	-	BT_3198	-	hypothetical protein
3198	 52.07	+1	4088719..4089225	+	168	29348608	-	BT_3199	-	putative non-specific DNA-binding protein
3199	 53.49	+1	4089306..4089821	+	171	29348609	-	BT_3200	-	putative N-acetylmuramoyl-L-alanine amidase
3200	 36.57	-1	4090035..4093181	+	1048	29348610	-	BT_3201	-	hypothetical protein
3201	 38.61	0	4093178..4097191	+	1337	29348611	-	BT_3202	-	cell well associated RhsD protein precursor
3202	 33.33	-1	4097151..4097723	+	190	29348612	-	BT_3203	-	hypothetical protein
3203	 41.78	0	4098004..4098216	+	70	29348613	-	BT_3204	-	hypothetical protein
3204	 36.60	-1	4098277..4099011	+	244	29348614	-	BT_3205	-	hypothetical protein
3205	 34.96	-1	4099013..4100059	+	348	29348615	-	BT_3206	-	hypothetical protein
3206	 33.59	-1	4100304..4101074	+	256	29348616	-	BT_3207	-	hypothetical protein
3207	 25.21	-2	4101064..4101297	+	77	29348617	-	BT_3208	-	hypothetical protein
3208	 51.19	+1	4102964..4103803	+	279	29348618	-	BT_3209	-	hypothetical protein
3209	 47.28	0	4103807..4104688	+	293	29348619	-	BT_3210	-	cell division protein FtsX
3210	 41.03	0	4104738..4104971	+	77	29348620	-	BT_3211	-	hypothetical protein
3211	 44.78	0	4104984..4105778	+	264	29348621	-	BT_3212	-	putative bacitracin resistance protein
3212	 52.42	+1	4105831..4106553	+	240	29348622	-	BT_3213	-	tRNA pseudouridine synthase B
3213	 47.69	0	4106571..4107629	+	352	29348623	-	BT_3214	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
3214	 44.05	0	4107646..4107981	+	111	29348624	-	BT_3215	-	hypothetical protein
3215	 50.72	+1	4107989..4108471	+	160	29348625	-	BT_3216	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
3216	 36.98	-1	4108502..4108693	-	63	29348626	-	BT_3217	-	hypothetical protein
3217	 36.32	-1	4108690..4108923	-	77	29348627	-	BT_3218	-	hypothetical protein
3218	 50.27	+1	4109131..4110423	+	430	29348628	-	BT_3219	-	S-adenosylmethionine synthetase
3219	 34.02	-1	4111576..4113312	-	578	29348629	-	BT_3220	-	TPR repeat-containing protein
3220	 31.40	-2	4113369..4113731	-	120	29348630	-	BT_3221	-	hypothetical protein
3221	 34.83	-1	4114044..4114976	+	310	29348631	-	BT_3222	-	hypothetical protein
3222	 34.54	-1	4115064..4115645	+	193	29348632	-	BT_3223	-	hypothetical protein
3223	 49.49	+1	4115826..4116413	+	195	29348633	-	BT_3224	-	putative lysine decarboxylase
3224	 39.56	0	4116410..4117132	+	240	29348634	-	BT_3225	-	hypothetical protein
3225	 45.33	0	4117392..4117883	+	163	29348635	-	BT_3226	-	hypothetical protein
3226	 48.48	+1	4117949..4118278	+	109	29348636	rnpA	BT_3227	-	ribonuclease P
3227	 52.17	+1	4118275..4118550	+	91	29348637	-	BT_3228	-	hypothetical protein
3228	 50.58	+1	4118579..4119268	+	229	29348638	-	BT_3229	-	TatD-related DNase
3229	 47.41	0	4119353..4120645	+	430	29348639	-	BT_3230	-	tyrosyl-tRNA synthetase
3230	 50.30	+1	4121092..4121934	+	280	29348640	-	BT_3231	-	5-keto-4-deoxyuronate isomerase
3231	 47.39	0	4121974..4122777	+	267	29348641	-	BT_3232	-	gluconate 5-dehydrogenase
3232	 50.20	+1	4122930..4124174	+	414	29348642	-	BT_3233	-	hypothetical protein
3233	 39.46	0	4124453..4125643	-	396	29348643	-	BT_3234	-	hypothetical protein
3234	 39.81	0	4125849..4126883	-	344	29348644	-	BT_3235	-	hypothetical protein
3235	 36.52	-1	4126901..4128157	-	418	29348645	-	BT_3236	-	hypothetical protein
43.33	MEAN

5.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.