IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2986	 35.35	-1	3766049..3766345	+	98	29348396	-	BT_2987	-	hypothetical protein
2987	 30.28	-2	3766460..3766852	+	130	29348397	-	BT_2988	-	hypothetical protein
2988	 35.66	-1	3766875..3768077	+	400	29348398	-	BT_2989	-	hypothetical protein
2989	 43.90	0	3768997..3770463	+	488	29348399	-	BT_2990	-	hypothetical protein
2990	 40.52	0	3770541..3771737	+	398	29348400	-	BT_2991	-	hypothetical protein
2991	 45.07	0	3772196..3773644	+	482	29348401	-	BT_2992	-	hypothetical protein
2992	 44.81	0	3774175..3774993	+	272	29348402	-	BT_2993	-	hypothetical protein
2993	 49.26	+1	3775172..3775579	+	135	29348403	-	BT_2994	-	hypothetical protein
2994	 50.25	+1	3775595..3776806	+	403	29348404	-	BT_2995	-	hypothetical protein
2995	 43.04	0	3776831..3777376	+	181	29348405	-	BT_2996	-	hypothetical protein
2996	 36.55	-1	3777742..3778239	+	165	29348406	-	BT_2997	-	hypothetical protein
2997	 32.73	-2	3778272..3778931	+	219	29348407	-	BT_2998	-	hypothetical protein
2998	 34.79	-1	3778947..3781559	+	870	29348408	-	BT_2999	-	helicase IV
2999	 43.17	0	3781733..3782362	-	209	29348409	-	BT_3000	-	hypothetical protein
3000	 44.32	0	3782479..3784062	-	527	29348410	-	BT_3001	-	ATP-dependent DNA helicase
3001	 34.80	-1	3784282..3784485	-	67	29348411	-	BT_3002	-	hypothetical protein
3002	 32.85	-2	3784590..3786869	+	759	29348412	-	BT_3003	-	hypothetical protein
3003	 47.94	0	3788116..3789471	+	451	29348413	-	BT_3004	-	hypothetical protein
3004	 45.73	0	3789459..3792305	+	948	29348414	-	BT_3005	-	hypothetical protein
3005	 45.49	0	3792446..3795349	+	967	29348415	-	BT_3006	-	hypothetical protein
3006	 47.55	0	3795611..3796489	+	292	29348416	-	BT_3007	-	D-alanyl-D-alanine dipeptidase
3007	 48.57	+1	3796530..3797717	+	395	29348417	-	BT_3008	-	hypothetical protein
3008	 44.37	0	3798016..3800607	-	863	29348418	-	BT_3009	-	beta-glucosidase (gentiobiase)
3009	 37.15	-1	3801071..3801646	-	191	29348419	-	BT_3010	-	RNA polymerase ECF-type sigma factor
3010	 41.03	0	3801841..3802749	+	302	29348420	-	BT_3011	-	putative anti-sigma factor
3011	 44.17	0	3802807..3806184	+	1125	29348421	-	BT_3012	-	hypothetical protein
3012	 46.77	0	3806197..3808131	+	644	29348422	-	BT_3013	-	hypothetical protein
3013	 44.70	0	3808169..3809065	+	298	29348423	-	BT_3014	-	putative chitobiase
3014	 47.40	0	3809075..3811981	+	968	29348424	-	BT_3015	-	hypothetical protein
3015	 51.33	+1	3812168..3814984	+	938	29348425	-	BT_3016	-	TonB-dependent receptor
3016	 48.23	0	3815152..3816084	+	310	29348426	-	BT_3017	-	acid phosphatase
3017	 46.95	0	3816241..3818091	-	616	29348427	-	BT_3018	-	putative mechano-sensitive ion channel
3018	 48.53	+1	3818218..3819204	+	328	29348428	-	BT_3019	-	putative Na+/Ca2+ exchanger protein, cation antiporter
3019	 46.82	0	3819286..3820827	-	513	29348429	-	BT_3020	-	hypothetical protein
3020	 48.41	0	3820972..3822324	+	450	29348430	-	BT_3021	-	hypothetical protein
3021	 31.25	-2	3822399..3822590	-	63	29348431	-	BT_3022	-	hypothetical protein
3022	 45.64	0	3822979..3823896	+	305	29348432	-	BT_3023	-	hypothetical protein
3023	 43.02	0	3824416..3827481	+	1021	29348433	-	BT_3024	-	hypothetical protein
3024	 43.36	0	3827521..3829146	+	541	29348434	-	BT_3025	-	hypothetical protein
3025	 43.19	0	3829182..3830744	+	520	29348435	-	BT_3026	-	glycosylhydrolase, putative xylanase
3026	 40.40	0	3830761..3831948	+	395	29348436	-	BT_3027	-	hypothetical protein
3027	 48.61	+1	3832138..3833328	+	396	29348437	-	BT_3028	-	hypothetical protein
3028	 47.55	0	3833579..3835456	+	625	29348438	-	BT_3029	-	Na+/glucose symporter
3029	 47.68	0	3835587..3838061	+	824	29348439	-	BT_3030	-	hypothetical protein
3030	 41.63	0	3838075..3838701	-	208	29348440	-	BT_3031	-	hypothetical protein
3031	 47.32	0	3838872..3840008	+	378	29348441	-	BT_3032	-	hypothetical protein
3032	 50.75	+1	3840014..3841891	+	625	29348442	-	BT_3033	-	DNA topoisomerase IV subunit B
3033	 46.93	0	3841888..3842343	+	151	29348443	coaD	BT_3034	-	phosphopantetheine adenylyltransferase
3034	 51.45	+1	3842449..3844038	+	529	29348444	-	BT_3035	-	carboxy-terminal processing protease precursor
3035	 51.96	+1	3844119..3846701	+	860	29348445	-	BT_3036	-	hypothetical protein
3036	 51.18	+1	3846909..3847418	+	169	29348446	-	BT_3037	-	RNA polymerase ECF-type sigma factor
3037	 50.43	+1	3847435..3848475	+	346	29348447	-	BT_3038	-	putative anti-sigma factor
3038	 43.36	0	3848661..3849089	-	142	29348448	-	BT_3039	-	hypothetical protein
3039	 43.66	0	3849918..3850934	+	338	29348449	-	BT_3040	-	hypothetical protein
3040	 47.73	0	3850953..3851591	+	212	29348450	-	BT_3041	-	hypothetical protein
3041	 40.48	0	3851512..3851889	-	125	29348451	-	BT_3042	-	hypothetical protein
3042	 50.35	+1	3852033..3853619	-	528	29348452	-	BT_3043	-	putative xylanase
3043	 39.19	0	3853871..3854758	-	295	29348453	-	BT_3044	-	hypothetical protein
3044	 43.62	0	3854807..3856789	-	660	29348454	-	BT_3045	-	hypothetical protein
3045	 42.18	0	3856829..3859924	-	1031	29348455	-	BT_3046	-	hypothetical protein
3046	 38.79	0	3859947..3861248	-	433	29348456	-	BT_3047	-	hypothetical protein
3047	 43.75	0	3861603..3864290	-	895	29348457	-	BT_3048	-	hypothetical protein
3048	 44.73	0	3864475..3868605	+	1376	29348458	-	BT_3049	-	two-component system sensor histidine kinase/response regulator, hybrid ('one-component system')
3049	 45.86	0	3868574..3869539	-	321	29348459	-	BT_3050	-	chitinase precursor
3050	 52.99	+1	3869864..3871420	+	518	29348460	-	BT_3051	-	mucin-desulfating sulfatase
3051	 48.16	0	3872096..3873046	+	316	29348461	-	BT_3052	-	transcriptional regulator
3052	 46.81	0	3873167..3873871	+	234	29348462	-	BT_3053	-	putative cytochrome B subunit
3053	 49.09	+1	3873909..3875888	+	659	29348463	sdhA	BT_3054	-	succinate dehydrogenase flavoprotein subunit
3054	 50.13	+1	3875925..3876680	+	251	29348464	-	BT_3055	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
3055	 38.46	0	3876841..3878070	+	409	29348465	-	BT_3056	-	hypothetical protein
3056	 47.61	0	3878142..3879668	-	508	29348466	-	BT_3057	-	N-acetylgalactosamine-6-sulfatase precursor
3057	 39.86	0	3879903..3880745	-	280	29348467	-	BT_3058	-	transcriptional regulator
3058	 39.08	0	3880944..3881918	-	324	29348468	-	BT_3059	-	hypothetical protein
3059	 46.99	0	3881969..3882883	-	304	29348469	-	BT_3060	-	hypothetical protein
3060	 44.60	0	3882939..3884216	-	425	29348470	-	BT_3061	-	hypothetical protein
3061	 47.79	0	3884488..3884985	-	165	29348471	-	BT_3062	-	hypothetical protein
3062	 42.35	0	3885199..3885453	+	84	29348472	-	BT_3063	-	hypothetical protein
3063	 41.89	0	3885945..3886166	-	73	29348473	-	BT_3064	-	hypothetical protein
3064	 47.22	0	3886637..3888148	-	503	29348474	-	BT_3065	-	alpha-galactosidase precursor
3065	 47.37	0	3888256..3890364	+	702	29348475	-	BT_3066	-	hypothetical protein
3066	 43.56	0	3890378..3891433	+	351	29348476	-	BT_3067	-	hypothetical protein
3067	 39.96	0	3891725..3892720	+	331	29348477	-	BT_3068	-	transposase, invertase
3068	 45.88	0	3892910..3894160	-	416	29348478	-	BT_3069	-	putative disulphide-isomerase
3069	 48.47	0	3894190..3895266	-	358	29348479	-	BT_3070	-	Smf protein DNA processing chain A
3070	 43.95	0	3895308..3895712	-	134	29348480	-	BT_3071	-	hypothetical protein
3071	 46.81	0	3895716..3896999	-	427	29348481	-	BT_3072	-	collagenase precursor
3072	 48.14	0	3897137..3898129	+	330	29348482	-	BT_3073	-	dehydrogenase
3073	 43.06	0	3898132..3899097	-	321	29348483	-	BT_3074	-	hypothetical protein
3074	 41.47	0	3899088..3900095	-	335	29348484	-	BT_3075	-	NAD-dependent epimerase/dehydratase family protein
3075	 28.21	-2	3900205..3900399	-	64	29348485	-	BT_3076	-	hypothetical protein
3076	 47.61	0	3900359..3902515	+	718	29348486	-	BT_3077	-	ribonuclease R
3077	 45.00	0	3902664..3903143	+	159	29348487	-	BT_3078	-	5-nitroimidazole antibiotic resistance protein
3078	 40.15	0	3903322..3905082	-	586	29348488	-	BT_3079	-	hypothetical protein
3079	 51.05	+1	3905175..3906122	-	315	29348489	-	BT_3080	-	cysteine synthase A
3080	 50.00	+1	3906250..3906591	-	113	29348490	-	BT_3081	-	putative pectin degradation protein
3081	 48.76	+1	3906644..3908290	-	548	29348491	-	BT_3082	-	2,6-beta-D-fructofuranosidase precursor
3082	 41.33	0	3908453..3909778	-	441	29348492	-	BT_3083	-	putative ATPase
3083	 45.99	0	3909889..3910710	-	273	29348493	-	BT_3084	-	lipase, putative
3084	 48.20	0	3910956..3913094	+	712	29348494	-	BT_3085	-	alpha-xylosidase
3085	 50.70	+1	3913435..3915939	-	834	29348495	-	BT_3086	-	alpha-glucosidase II
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.