IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2559	 44.34	0	3192720..3194363	-	547	29347969	-	BT_2559	-	hypothetical protein
2560	 45.11	0	3194382..3197684	-	1100	29347970	-	BT_2560	-	hypothetical protein
2561	 45.47	0	3197963..3198901	-	312	29347971	-	BT_2561	-	putative anti-sigma factor
2562	 44.13	0	3199007..3199432	-	141	29347972	-	BT_2562	-	putative RNA polymerase ECF-type sigma factor
2563	 46.12	0	3199710..3201836	-	708	29347973	-	BT_2563	-	polynucleotide phosphorylase/polyadenylase
2564	 46.61	0	3202032..3203183	+	383	29347974	-	BT_2564	-	hypothetical protein
2565	 41.94	0	3203364..3203828	+	154	29347975	-	BT_2565	-	transcription elongation factor greA
2566	 42.75	0	3203881..3204273	+	130	29347976	-	BT_2566	-	HIT family protein
2567	 46.15	0	3204350..3205270	-	306	29347977	-	BT_2567	-	putative permease
2568	 45.50	0	3205277..3206509	-	410	29347978	-	BT_2568	-	putative sugar transporter
2569	 43.06	0	3206763..3207266	+	167	29347979	-	BT_2569	-	RNA polymerase ECF-type sigma factor
2570	 46.20	0	3207526..3208971	+	481	29347980	-	BT_2570	-	glutamate decarboxylase
2571	 49.59	+1	3208980..3209945	+	321	29347981	-	BT_2571	-	glutaminase
2572	 44.81	0	3210215..3210946	-	243	29347982	-	BT_2572	-	putative potassium channel subunit
2573	 47.87	0	3211163..3212875	+	570	29347983	-	BT_2573	-	glutamate/gamma-aminobutyrate anti-porter
2574	 40.79	0	3212942..3214201	-	419	29347984	-	BT_2574	-	two-component system sensor histidine kinase
2575	 29.73	-2	3214717..3214938	+	73	29347985	-	BT_2575	-	hypothetical protein
2576	 39.64	0	3214935..3216170	+	411	29347986	-	BT_2576	-	transposase
2577	 41.17	0	3216518..3220741	-	1407	29347987	-	BT_2577	-	hypothetical protein
2578	 38.69	0	3220722..3221915	-	397	29347988	-	BT_2578	-	hypothetical protein
2579	 34.75	-1	3222805..3223650	-	281	29347989	-	BT_2579	-	hypothetical protein
2580	 45.66	0	3224933..3225151	-	72	29347990	-	BT_2580	-	hypothetical protein
2581	 45.24	0	3225213..3225716	+	167	29347991	-	BT_2581	-	hypothetical protein
2582	 49.82	+1	3225821..3226372	+	183	29347992	-	BT_2582	-	hypothetical protein
2583	 46.93	0	3226384..3227310	+	308	29347993	-	BT_2583	-	hypothetical protein
2584	 46.18	0	3227303..3228127	+	274	29347994	-	BT_2584	-	hypothetical protein
2585	 50.34	+1	3228139..3228432	+	97	29347995	-	BT_2585	-	hypothetical protein
2586	 49.60	+1	3228445..3228948	+	167	29347996	-	BT_2586	-	hypothetical protein
2587	 45.65	0	3229181..3230146	+	321	29347997	-	BT_2587	-	hypothetical protein
2588	 48.26	0	3230392..3231195	+	267	29347998	-	BT_2588	-	hypothetical protein
2589	 50.71	+1	3231198..3231968	+	256	29347999	-	BT_2589	-	type I restriction enzyme, M subunit
2590	 52.25	+1	3232093..3233250	+	385	29348000	-	BT_2590	-	hypothetical protein
2591	 41.87	0	3233613..3233975	+	120	29348001	-	BT_2591	-	hypothetical protein
2592	 47.35	0	3234077..3234811	+	244	29348002	-	BT_2592	-	hypothetical protein
2593	 45.68	0	3234756..3235241	-	161	29348003	-	BT_2593	-	protein found in conjugate transposon
2594	 47.11	0	3235241..3235828	-	195	29348004	-	BT_2594	-	protein found in conjugate transposon
2595	 49.46	+1	3235825..3236754	-	309	29348005	-	BT_2595	-	protein found in conjugate transposon
2596	 52.35	+1	3236802..3238100	-	432	29348006	-	BT_2596	-	protein found in conjugate transposon
2597	 47.33	0	3238051..3238350	-	99	29348007	-	BT_2597	-	hypothetical protein
2598	 53.21	+1	3238347..3238970	-	207	29348008	-	BT_2598	-	protein found in conjugate transposon
2599	 54.73	+2	3238992..3240005	-	337	29348009	-	BT_2599	-	protein found in conjugate transposon
2600	 51.63	+1	3240009..3240653	-	214	29348010	-	BT_2600	-	protein found in conjugate transposon
2601	 52.42	+1	3240650..3241021	-	123	29348011	-	BT_2601	-	protein found in conjugate transposon
2602	 40.02	0	3241259..3243082	-	607	29348012	-	BT_2602	-	putative maturase/reverse transcriptase
2603	 53.17	+1	3243651..3246050	-	799	29348013	-	BT_2603	-	protein found in conjugate transposon
2604	 50.00	+1	3246047..3246754	-	235	29348014	-	BT_2604	-	protein found in conjugate transposon
2605	 33.33	-1	3246837..3247034	-	65	29348015	-	BT_2605	-	hypothetical protein
2606	 44.54	0	3247085..3248092	+	335	29348016	-	BT_2606	-	hypothetical protein
2607	 49.33	+1	3248177..3248851	-	224	29348017	-	BT_2607	-	hypothetical protein
2608	 47.53	0	3248839..3249303	-	154	29348018	-	BT_2608	-	hypothetical protein
2609	 48.22	0	3249310..3250068	-	252	29348019	-	BT_2609	-	protein found in conjugate transposon
2610	 46.24	0	3250156..3250581	+	141	29348020	-	BT_2610	-	hypothetical protein
2611	 48.89	+1	3250691..3250915	+	74	29348021	-	BT_2611	-	hypothetical protein
2612	 43.03	0	3250918..3251340	+	140	29348022	-	BT_2612	-	hypothetical protein
2613	 50.91	+1	3251427..3252581	+	384	29348023	-	BT_2613	-	putative mobilization protein
2614	 44.72	0	3252620..3254665	+	681	29348024	-	BT_2614	-	putative mobilization protein
2615	 43.62	0	3254829..3256121	-	430	29348025	-	BT_2615	-	reverse transcriptase
2616	 46.74	0	3256445..3256720	+	91	29348026	-	BT_2616	-	hypothetical protein
2617	 43.57	0	3256696..3258102	-	468	29348027	-	BT_2617	-	reverse transcriptase
2618	 53.79	+2	3258569..3259849	-	426	29348028	-	BT_2618	-	two-component system response regulator
2619	 48.38	0	3259854..3262226	-	790	29348029	-	BT_2619	-	two-component system sensor histidine kinase
2620	 36.62	-1	3262908..3264857	-	649	29348030	-	BT_2620	-	alpha-glucosidase
2621	 35.09	-1	3264883..3266193	-	436	29348031	-	BT_2621	-	hypothetical protein
2622	 37.25	-1	3266202..3268370	-	722	29348032	-	BT_2622	-	alpha-glucuronidase
2623	 36.04	-1	3268467..3270020	-	517	29348033	-	BT_2623	-	putative alpha-1,6-mannanase
2624	 32.92	-2	3270036..3271001	-	321	29348034	-	BT_2624	-	hypothetical protein
2625	 36.76	-1	3271013..3272995	-	660	29348035	-	BT_2625	-	hypothetical protein
2626	 34.59	-1	3273006..3276110	-	1034	29348036	-	BT_2626	-	hypothetical protein
2627	 35.56	-1	3276144..3277448	-	434	29348037	-	BT_2627	-	cell surface protein
2628	 41.06	0	3277939..3281976	-	1345	29348038	-	BT_2628	-	two-component system sensor histidine kinase/response regulator, hybrid ('one-component system')
2629	 45.90	0	3282187..3284469	+	760	29348039	-	BT_2629	-	putative alpha-1,2-mannosidase
2630	 47.53	0	3284523..3285473	+	316	29348040	-	BT_2630	-	hypothetical protein
2631	 45.60	0	3285526..3286683	+	385	29348041	-	BT_2631	-	putative hydrolase
2632	 44.74	0	3286743..3288188	+	481	29348042	-	BT_2632	-	hypothetical protein
2633	 38.58	0	3288297..3288563	+	88	29348043	-	BT_2633	-	hypothetical protein
2634	 39.58	0	3288975..3289967	-	330	29348044	-	BT_2634	-	putative integrase/recombinase
2635	 44.44	0	3289964..3290233	-	89	29348045	-	BT_2635	-	putative integrase/recombinase
2636	 36.41	-1	3290339..3290695	-	118	29348046	-	BT_2636	-	hypothetical protein
2637	 41.29	0	3290711..3290911	-	66	29348047	-	BT_2637	-	hypothetical protein
2638	 41.39	0	3291031..3291303	+	90	29348048	-	BT_2638	-	hypothetical protein
2639	 37.74	-1	3291337..3292290	-	317	29348049	-	BT_2639	-	hypothetical protein
2640	 32.29	-2	3292615..3292902	-	95	29348050	-	BT_2640	-	hypothetical protein
2641	 36.51	-1	3293235..3293486	-	83	29348051	-	BT_2641	-	hypothetical protein
2642	 51.38	+1	3293837..3295642	+	601	29348052	-	BT_2642	-	hypothetical protein
2643	 52.17	+1	3295689..3295964	+	91	29348053	-	BT_2643	-	hypothetical protein
2644	 53.09	+1	3296059..3297819	+	586	29348054	-	BT_2644	-	DNA topoisomerase I
2645	 55.49	+2	3298565..3299647	+	360	29348055	-	BT_2645	-	hypothetical protein
2646	 48.65	+1	3299669..3299890	+	73	29348056	-	BT_2646	-	hypothetical protein
2647	 51.85	+1	3299935..3301041	+	368	29348057	-	BT_2647	-	hypothetical protein
2648	 51.28	+1	3301054..3301755	+	233	29348058	-	BT_2648	-	hypothetical protein
2649	 51.88	+1	3301752..3302549	+	265	29348059	-	BT_2649	-	ThiF family protein, ubiquitin-activating enzyme
2650	 48.43	0	3302647..3303348	-	233	29348060	-	BT_2650	-	hypothetical protein
2651	 45.58	0	3303406..3303699	-	97	29348061	-	BT_2651	-	hypothetical protein
2652	 43.40	0	3304047..3304334	+	95	29348062	-	BT_2652	-	hypothetical protein
2653	 45.92	0	3304345..3304638	+	97	29348063	-	BT_2653	-	hypothetical protein
2654	 37.29	-1	3305330..3306541	+	403	29348064	-	BT_2654	-	transposase
2655	 39.47	0	3306623..3309850	-	1075	29348065	-	BT_2655	-	hypothetical protein
2656	 40.22	0	3309896..3310984	-	362	29348066	-	BT_2656	-	hypothetical protein
2657	 41.00	0	3310981..3311997	-	338	29348067	-	BT_2657	-	hypothetical protein
2658	 41.46	0	3312008..3314026	-	672	29348068	-	BT_2658	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.