IslandPathversion 1.0

IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.33 STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
194	 40.51	0	207864..208922	+	352	29345604	-	BT_0194	-	hypothetical protein
195	 40.00	0	208943..209842	+	299	29345605	-	BT_0195	-	glycerophosphoryl diester phosphodiesterase
196	 43.36	0	209855..211201	+	448	29345606	-	BT_0196	-	putative hexose phosphate transport protein
197	 40.33	0	211460..212059	+	199	29345607	-	BT_0197	-	hypothetical protein
198	 40.63	0	212369..214273	+	634	29345608	-	BT_0198	-	hypothetical protein
199	 40.85	0	214349..214840	+	163	29345609	-	BT_0199	-	hypothetical protein
200	 41.55	0	215094..215945	+	283	29345610	hisG	BT_0200	-	ATP phosphoribosyltransferase
201	 46.31	0	215955..217241	+	428	29345611	-	BT_0201	-	histidinol dehydrogenase
202	 42.75	0	217238..218278	+	346	29345612	-	BT_0202	-	histidinol-phosphate aminotransferase
203	 43.64	0	218282..219406	+	374	29345613	-	BT_0203	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
204	 39.22	0	219497..220006	+	169	29345614	-	BT_0204	-	hypothetical protein
205	 43.77	0	220121..222046	-	641	29345615	nadE	BT_0205	-	NAD synthetase
206	 44.38	0	222704..225646	+	980	29345616	-	BT_0206	-	hypothetical protein
207	 42.38	0	225665..227200	+	511	29345617	-	BT_0207	-	hypothetical protein
208	 41.00	0	227218..228117	+	299	29345618	-	BT_0208	-	hypothetical protein
209	 39.78	0	228135..230087	+	650	29345619	-	BT_0209	-	hypothetical protein
210	 40.63	0	230133..232847	+	904	29345620	-	BT_0210	-	leucine-rich repeat-containing protein
211	 40.85	0	232865..234847	+	660	29345621	-	BT_0211	-	hypothetical protein
212	 44.78	0	234898..236985	+	695	29345622	-	BT_0212	-	protease
213	 43.14	0	236998..237813	+	271	29345623	-	BT_0213	-	hypothetical protein
214	 36.90	-1	237835..238311	+	158	29345624	-	BT_0214	-	hypothetical protein
215	 38.23	0	238500..238928	+	142	29345625	-	BT_0215	-	iron uptake regulatory protein
216	 41.53	0	238951..239511	+	186	29345626	-	BT_0216	-	putative rubrerythrin
217	 43.12	0	239643..240245	+	200	29345627	-	BT_0217	-	hypothetical protein
218	 40.00	0	240357..240821	-	154	29345628	-	BT_0218	-	thioredoxin (TRX)
219	 36.67	-1	240836..241135	-	99	29345629	-	BT_0219	-	thioredoxin C-2
220	 36.56	-1	241421..241606	-	61	29345630	-	BT_0220	-	hypothetical protein
221	 41.83	0	241657..242916	+	419	29345631	-	BT_0221	-	hypothetical protein
222	 48.83	+1	242935..243960	+	341	29345632	-	BT_0222	-	two-component system sensor
223	 49.93	+1	244031..244723	+	230	29345633	-	BT_0223	-	two-component system response regulator
224	 44.94	0	244852..245256	-	134	29345634	-	BT_0224	-	hypothetical protein
225	 44.11	0	245298..245891	-	197	29345635	-	BT_0225	-	hypothetical protein
226	 33.70	-1	245914..246459	-	181	29345636	-	BT_0226	-	hypothetical protein
227	 41.27	0	246480..247109	-	209	29345637	-	BT_0227	-	hypothetical protein
228	 45.62	0	247354..249387	-	677	29345638	-	BT_0228	-	putative protein involved in recombination
229	 45.03	0	249577..250602	-	341	29345639	-	BT_0229	-	hypothetical protein
230	 44.67	0	250714..252072	-	452	29345640	-	BT_0230	-	hypothetical protein
231	 48.92	+1	252110..252481	-	123	29345641	-	BT_0231	-	excisionase
232	 41.54	0	252590..253357	-	255	29345642	-	BT_0232	-	putative protein involved in transposition
233	 48.40	0	253724..254845	-	373	29345643	-	BT_0233	-	integrase
234	 45.64	0	254974..255924	-	316	29345644	-	BT_0234	-	putative transposase
235	 41.93	0	256382..257509	+	375	29345645	-	BT_0235	-	hypothetical protein
236	 43.14	0	257778..259826	-	682	29345646	-	BT_0236	-	hypothetical protein
237	 41.86	0	259935..262022	-	695	29345647	-	BT_0237	-	hypothetical protein
238	 42.97	0	262126..263370	-	414	29345648	-	BT_0238	-	anaerobic sulfatase-maturase
239	 37.96	-1	263528..264262	+	244	29345649	-	BT_0239	-	hypothetical protein
240	 33.62	-1	264306..266060	+	584	29345650	-	BT_0240	-	hypothetical protein
241	 39.58	0	266226..266609	+	127	29345651	-	BT_0241	-	hypothetical protein
242	 36.27	-1	266639..267115	+	158	29345652	-	BT_0242	-	putative polysaccharide deacetylase
243	 40.10	0	267194..268021	-	275	29345653	-	BT_0243	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
244	 46.20	0	268072..269322	+	416	29345654	-	BT_0244	-	putative exonuclease
245	 45.20	0	269319..272183	+	954	29345655	-	BT_0245	-	ATP-dependent exonuclease sbcC
246	 45.42	0	272167..273333	-	388	29345656	-	BT_0246	-	calcineurin-like phosphoesterase domain-containing protein
247	 44.39	0	273387..273965	-	192	29345657	-	BT_0247	-	hypothetical protein
248	 42.94	0	273972..274481	-	169	29345658	-	BT_0248	-	RNA polymerase ECF-type sigma factor
249	 48.28	0	274551..275453	-	300	29345659	-	BT_0249	-	5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase
250	 46.94	0	275479..276816	-	445	29345660	-	BT_0250	-	dihydroorotase
251	 45.70	0	276813..277556	-	247	29345661	-	BT_0251	-	dolichol-phosphate mannosyltransferase
252	 48.26	0	277801..281184	+	1127	29345662	-	BT_0252	-	transcription-repair coupling factor
253	 36.05	-1	281298..282143	+	281	29345663	-	BT_0253	-	hypothetical protein
254	 47.61	0	282585..284447	-	620	29345664	-	BT_0254	-	hypothetical protein
255	 39.56	0	284532..284756	-	74	29345665	-	BT_0255	-	hypothetical protein
256	 42.77	0	284756..285073	-	105	29345666	-	BT_0256	-	hypothetical protein
257	 45.66	0	285198..288110	-	970	29345667	-	BT_0257	-	xanthan lyase
258	 45.43	0	288339..290330	-	663	29345668	-	BT_0258	-	glucosamine-6-phosphate deaminase-like protein
259	 47.46	0	290470..291255	-	261	29345669	-	BT_0259	-	putative amidohydrolase
260	 40.00	0	291378..291932	-	184	29345670	-	BT_0260	-	acyltransferase family protein
261	 38.52	0	291941..292210	-	89	29345671	-	BT_0261	-	hypothetical protein
262	 35.85	-1	292568..293203	+	211	29345672	-	BT_0262	-	hypothetical protein
263	 36.52	-1	293299..294711	+	470	29345673	-	BT_0263	-	hypothetical protein
264	 39.22	0	294837..296585	-	582	29345674	-	BT_0264	-	hypothetical protein
265	 37.85	-1	296627..298108	-	493	29345675	-	BT_0265	-	hypothetical protein
266	 37.17	-1	298121..299581	-	486	29345676	-	BT_0266	-	hypothetical protein
267	 32.12	-2	299864..303976	+	1370	29345677	-	BT_0267	-	two-component system sensor histidine kinase/response regulator, hybrid ('one component system')
268	 39.16	0	304251..307184	+	977	29345678	-	BT_0268	-	hypothetical protein
269	 39.57	0	307218..308756	+	512	29345679	-	BT_0269	-	hypothetical protein
270	 34.84	-1	308770..309564	+	264	29345680	-	BT_0270	-	hypothetical protein
271	 36.99	-1	309707..310582	+	291	29345681	-	BT_0271	-	hypothetical protein
272	 40.08	0	310606..313776	+	1056	29345682	-	BT_0272	-	hypothetical protein
273	 39.55	0	313801..315312	+	503	29345683	-	BT_0273	-	hypothetical protein
274	 36.79	-1	315339..316061	+	240	29345684	-	BT_0274	-	hypothetical protein
275	 40.21	0	316082..317767	+	561	29345685	-	BT_0275	-	hypothetical protein
276	 41.03	0	317808..319613	+	601	29345686	-	BT_0276	-	hypothetical protein
277	 41.60	0	319627..321744	+	705	29345687	-	BT_0277	-	hypothetical protein
278	 40.50	0	321756..323528	+	590	29345688	-	BT_0278	-	hypothetical protein
279	 33.20	-1	323675..324427	+	250	29345689	-	BT_0279	-	hypothetical protein
280	 45.24	0	324541..325758	+	405	29345690	-	BT_0280	-	transposase for insertion sequence element ISRM3
281	 39.25	0	326008..326649	-	213	29345691	-	BT_0281	-	putative DNA-binding protein
282	 43.36	0	326951..328246	+	431	29345692	-	BT_0282	-	hypothetical protein
283	 40.86	0	328262..328447	+	61	29345693	-	BT_0283	-	hypothetical protein
284	 33.54	-1	328493..329944	+	483	29345694	-	BT_0284	-	peptidoglycan binding protein
285	 42.57	0	330174..331592	+	472	29345695	-	BT_0285	-	putative tolQ-type transport protein
286	 43.40	0	331576..332022	+	148	29345696	-	BT_0286	-	hypothetical protein
287	 40.85	0	332027..332452	+	141	29345697	-	BT_0287	-	putative biopolymer transmembrane protein
288	 46.78	0	332427..333950	+	507	29345698	-	BT_0288	-	hypothetical protein
289	 38.13	-1	334208..336898	-	896	29345699	-	BT_0289	-	hypothetical protein
290	 42.99	0	337216..339555	+	779	29345700	-	BT_0290	-	beta-galactosidase precursor
291	 41.10	0	339758..340723	+	321	29345701	-	BT_0291	-	integrase
292	 42.00	0	341115..341864	+	249	29345702	-	BT_0292	-	hypothetical protein
293	 42.25	0	341869..343101	+	410	29345703	-	BT_0293	-	hypothetical protein
43.33	MEAN

5.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.