IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1953	 52.09	+1	2451964..2454042	-	692	29347363	-	BT_1953	-	putative TonB-linked outer membrane receptor
1954	 49.41	+1	2454061..2455161	-	366	29347364	-	BT_1954	-	putative surface layer protein
1955	 43.23	0	2455190..2457280	-	696	29347365	-	BT_1955	-	putative cell wall biogenesis protein
1956	 47.14	0	2457295..2459076	-	593	29347366	-	BT_1956	-	putative cell surface protein
1957	 45.75	0	2459141..2460058	-	305	29347367	-	BT_1957	-	hypothetical protein
1958	 37.63	-1	2460314..2460499	-	61	29347368	-	BT_1958	-	hypothetical protein
1959	 48.18	0	2460792..2461121	-	109	29347369	-	BT_1959	-	hypothetical protein
1960	 46.01	0	2461168..2461806	-	212	29347370	-	BT_1960	-	integrase
1961	 52.05	+1	2461891..2462061	-	56	29347371	-	BT_1961	-	transposase
1962	 44.79	0	2462491..2463267	-	258	29347372	-	BT_1962	-	hypothetical protein
1963	 43.90	0	2463497..2464225	+	242	29347373	-	BT_1963	-	putative transcriptional regulator
1964	 46.96	0	2464700..2465308	-	202	29347374	-	BT_1964	-	hypothetical protein
1965	 50.77	+1	2465318..2466688	-	456	29347375	-	BT_1965	-	multidrug efflux pump channel protein
1966	 49.72	+1	2466692..2469889	-	1065	29347376	-	BT_1966	-	AcrB/AcrD/AcrF family multidrug resistance protein
1967	 51.53	+1	2469908..2471050	-	380	29347377	-	BT_1967	-	multidrug efflux protein
1968	 46.29	0	2471205..2472053	+	282	29347378	-	BT_1968	-	transcriptional regulator
1969	 51.57	+1	2472243..2474534	+	763	29347379	-	BT_1969	-	malic enzyme
1970	 46.67	0	2474872..2476206	+	444	29347380	-	BT_1970	-	glutamate dehydrogenase
1971	 49.97	+1	2476610..2478076	+	488	29347381	-	BT_1971	-	catalase
1972	 47.93	0	2478307..2481279	-	990	29347382	-	BT_1972	-	phosphoenolpyruvate synthase/pyruvate phosphate dikinase
1973	 47.91	0	2481611..2482948	+	445	29347383	-	BT_1973	-	glutamate dehydrogenase
1974	 49.91	+1	2483101..2484264	+	387	29347384	-	BT_1974	-	M24 family metallopeptidase
1975	 48.51	+1	2484488..2485996	-	502	29347385	-	BT_1975	-	tRNA nucleotidyltransferase
1976	 46.48	0	2486036..2486689	-	217	29347386	-	BT_1976	-	hypothetical protein
1977	 50.40	+1	2487583..2488572	-	329	29347387	-	BT_1977	-	hypothetical protein
1978	 50.99	+1	2488641..2489246	-	201	29347388	ruvA	BT_1978	-	Holliday junction DNA helicase motor protein
1979	 53.22	+1	2489425..2490324	+	299	29347389	-	BT_1979	-	meso-diaminopimelate D-dehydrogenase
1980	 43.44	0	2490471..2492132	+	553	29347390	-	BT_1980	-	transposase
1981	 41.50	0	2492244..2492549	+	101	29347391	-	BT_1981	-	hypothetical protein
1982	 36.67	-1	2492546..2492875	+	109	29347392	-	BT_1982	-	hypothetical protein
1983	 50.29	+1	2492878..2493567	+	229	29347393	-	BT_1983	-	hemolysin III
1984	 42.34	0	2493601..2493822	-	73	29347394	-	BT_1984	-	transcriptional regulator
1985	 35.29	-1	2493812..2494270	-	152	29347395	-	BT_1985	-	hypothetical protein
1986	 49.43	+1	2494470..2495171	+	233	29347396	-	BT_1986	-	putative ribose 5-phosphate isomerase
1987	 50.70	+1	2495352..2497787	+	811	29347397	-	BT_1987	-	hypothetical protein
1988	 48.52	+1	2498113..2498349	-	78	29347398	-	BT_1988	-	hypothetical protein
1989	 40.63	0	2498575..2499657	+	360	29347399	-	BT_1989	-	hypothetical protein
1990	 51.03	+1	2499959..2500444	+	161	29347400	-	BT_1990	-	hypothetical protein
1991	 55.56	+2	2500484..2500924	+	146	29347401	-	BT_1991	-	N-acetylmuramoyl-L-alanine amidase
1992	 38.98	0	2501223..2504354	+	1043	29347402	-	BT_1992	-	hypothetical protein
1993	 41.66	0	2504367..2508317	+	1316	29347403	-	BT_1993	-	putative cell wall-associated protein precursor
1994	 29.60	-2	2508286..2508606	+	106	29347404	-	BT_1994	-	hypothetical protein
1995	 35.73	-1	2508676..2509260	+	194	29347405	-	BT_1995	-	hypothetical protein
1996	 45.24	0	2509433..2510650	+	405	29347406	-	BT_1996	-	transposase
1997	 41.98	0	2510942..2511346	-	134	29347407	-	BT_1997	-	hypothetical protein
1998	 50.50	+1	2511803..2514196	+	797	29347408	-	BT_1998	-	anaerobic ribonucleoside triphosphate reductase
1999	 47.68	0	2514309..2514803	+	164	29347409	-	BT_1999	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2000	 51.38	+1	2515017..2516429	+	470	29347410	-	BT_2000	-	putative transport protein
2001	 49.93	+1	2517142..2518497	-	451	29347411	-	BT_2001	-	membrane-associated zinc metalloprotease
2002	 55.16	+2	2518622..2519794	-	390	29347412	-	BT_2002	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2003	 50.93	+1	2519858..2520715	-	285	29347413	-	BT_2003	-	putative membrane peptidase
2004	 49.26	+1	2520728..2521267	-	179	29347414	rimM	BT_2004	-	16S rRNA-processing protein
2005	 53.33	+1	2521264..2522568	-	434	29347415	-	BT_2005	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2006	 48.29	0	2522698..2523312	-	204	29347416	-	BT_2006	-	hypothetical protein
2007	 48.42	0	2523434..2524129	-	231	29347417	-	BT_2007	-	putative glycoprotease
2008	 48.01	0	2524219..2525097	+	292	161511191	-	BT_2008	-	hypothetical protein
2009	 46.99	0	2525126..2525740	+	204	29347419	gmk	BT_2009	-	guanylate kinase
2010	 40.78	0	2525737..2525991	+	84	29347420	-	BT_2010	-	hypothetical protein
2011	 47.29	0	2526087..2526695	+	202	29347421	nadD	BT_2011	-	nicotinic acid mononucleotide adenylyltransferase
2012	 41.32	0	2526658..2527947	-	429	29347422	-	BT_2012	-	putative ATPase
2013	 48.77	+1	2528100..2529155	-	351	29347423	-	BT_2013	-	putative phosphohydrolase
2014	 53.55	+1	2529269..2529832	+	187	29347424	-	BT_2014	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2015	 46.06	0	2529837..2530166	+	109	29347425	-	BT_2015	-	putative menaquinone biosynthesis protein
2016	 48.55	+1	2530168..2531304	-	378	29347426	-	BT_2016	-	dTDP-glucose 4,6-dehydratase
2017	 50.46	+1	2531321..2532196	-	291	29347427	-	BT_2017	-	glucose-1-phosphate thymidylyltransferase
2018	 51.02	+1	2532274..2532765	-	163	29347428	-	BT_2018	-	hypothetical protein
2019	 53.44	+1	2532821..2534899	+	692	29347429	-	BT_2019	-	polyphosphate kinase
2020	 53.13	+1	2534972..2537224	+	750	29347430	-	BT_2020	-	putative phosphate/sulphate permeases
2021	 53.41	+1	2537883..2538410	-	175	29347431	-	BT_2021	-	putative non-specific DNA-binding protein
2022	 50.68	+1	2538638..2539081	+	147	29347432	-	BT_2022	-	hypothetical protein
2023	 52.24	+1	2539054..2541216	-	720	29347433	-	BT_2023	-	two-component system sensor histidine kinase
2024	 41.29	0	2541785..2542450	-	221	29347434	-	BT_2024	-	hypothetical protein
2025	 51.79	+1	2542568..2542930	-	120	29347435	-	BT_2025	-	hypothetical protein
2026	 49.33	+1	2543431..2544399	+	322	29347436	-	BT_2026	-	endonuclease
2027	 59.59	+2	2544396..2544833	+	145	29347437	-	BT_2027	-	N-acetylmuramoyl-L-alanine amidase
2028	 44.74	0	2545159..2546166	+	335	29347438	-	BT_2028	-	hypothetical protein
2029	 51.06	+1	2546168..2546686	-	172	29347439	-	BT_2029	-	hypothetical protein
2030	 43.72	0	2547052..2547966	+	304	29347440	-	BT_2030	-	hypothetical protein
2031	 40.00	0	2548024..2548413	+	129	29347441	-	BT_2031	-	hypothetical protein
2032	 52.62	+1	2548855..2551722	+	955	29347442	-	BT_2032	-	hypothetical protein
2033	 51.70	+1	2551744..2553306	+	520	29347443	-	BT_2033	-	hypothetical protein
2034	 48.12	0	2553744..2554142	-	132	29347444	-	BT_2034	-	two-component system response regulator
2035	 51.59	+1	2554287..2555924	+	545	29347445	-	BT_2035	-	putative ABC transporter ATP-binding protein
2036	 45.36	0	2556012..2556593	+	193	29347446	-	BT_2036	-	hypothetical protein
2037	 49.88	+1	2556892..2557302	+	136	29347447	-	BT_2037	-	hypothetical protein
2038	 52.75	+1	2557389..2558660	+	423	29347448	-	BT_2038	-	cation efflux system protein
2039	 54.33	+2	2558790..2561918	+	1042	29347449	-	BT_2039	-	cation efflux system protein, AcrB/AcrD/AcrF family protein
2040	 50.75	+1	2561968..2563161	+	397	29347450	-	BT_2040	-	hypothetical protein
2041	 51.15	+1	2563244..2564068	+	274	29347451	-	BT_2041	-	hypothetical protein
2042	 49.56	+1	2564143..2565621	-	492	29347452	-	BT_2042	-	tRNA and rRNA cytosine-C5-methylase
2043	 48.74	+1	2565730..2566482	+	250	29347453	-	BT_2043	-	hypothetical protein
2044	 45.90	0	2566479..2567027	+	182	29347454	-	BT_2044	-	RNA polymerase ECF-type sigma factor
2045	 49.84	+1	2566995..2567309	-	104	29347455	-	BT_2045	-	hypothetical protein
2046	 47.87	0	2567684..2568880	+	398	29347456	-	BT_2046	-	putative cardiolipin synthetase
2047	 48.43	0	2568918..2569712	+	264	29347457	thyA	BT_2047	-	thymidylate synthase
2048	 49.70	+1	2569717..2570211	+	164	29347458	-	BT_2048	-	dihydrofolate reductase
2049	 40.62	0	2570231..2570710	-	159	29347459	-	BT_2049	-	transcriptional regulator
2050	 47.57	0	2570863..2572140	+	425	29347460	-	BT_2050	-	hypothetical protein
2051	 43.39	0	2572321..2572857	+	178	29347461	-	BT_2051	-	hypothetical protein
2052	 39.73	0	2573038..2573475	-	145	29347462	-	BT_2052	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.