IslandPathversion 1.0

IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.33 STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1438	 41.72	0	1767917..1769335	+	472	29346848	-	BT_1438	-	putative membrane efflux protein
1439	 44.74	0	1769414..1770895	-	493	29346849	-	BT_1439	-	hypothetical protein
1440	 47.14	0	1770909..1774037	-	1042	29346850	-	BT_1440	-	hypothetical protein
1441	 43.67	0	1774202..1775314	+	370	29346851	-	BT_1441	-	hypothetical protein
1442	 51.64	+1	1775436..1777850	+	804	29346852	-	BT_1442	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1443	 48.92	+1	1777882..1779036	+	384	29346853	-	BT_1443	-	8-amino-7-oxononanoate synthase
1444	 46.97	0	1779033..1779692	+	219	29346854	-	BT_1444	-	hypothetical protein
1445	 44.15	0	1779703..1780488	+	261	29346855	-	BT_1445	-	putative biotin synthesis protein bioC
1446	 45.99	0	1780485..1781132	+	215	29346856	bioD	BT_1446	-	dithiobiotin synthetase
1447	 46.31	0	1781157..1783514	-	785	29346857	-	BT_1447	-	two-component system sensor histidine kinase
1448	 46.10	0	1783606..1784130	-	174	29346858	-	BT_1448	-	biotin carboxyl carrier protein
1449	 50.20	+1	1784196..1785707	-	503	29346859	-	BT_1449	-	biotin carboxylase
1450	 49.71	+1	1785763..1787307	-	514	29346860	-	BT_1450	-	propionyl-CoA carboxylase beta chain
1451	 49.66	+1	1787553..1788140	+	195	29346861	-	BT_1451	-	hypothetical protein
1452	 45.02	0	1788165..1789619	+	484	29346862	-	BT_1452	-	hypothetical protein
1453	 44.33	0	1789860..1791359	+	499	29346863	-	BT_1453	-	L-lactate permease
1454	 52.66	+1	1791650..1792270	-	206	29346864	prfH	BT_1454	-	peptide chain release factor-like protein
1455	 48.43	0	1792275..1793672	-	465	29346865	-	BT_1455	-	protein rtcB
1456	 43.04	0	1794185..1794658	+	157	29346866	-	BT_1456	-	thioredoxin (TRX)
1457	 43.03	0	1794817..1795548	-	243	29346867	-	BT_1457	-	two-component system response regulator
1458	 43.81	0	1795533..1796639	-	368	29346868	-	BT_1458	-	putative two-component system sensor histidine kinase
1459	 44.85	0	1796636..1797616	-	326	29346869	-	BT_1459	-	two-component system sensor
1460	 47.66	0	1797773..1800250	-	825	29346870	-	BT_1460	-	hypothetical protein
1461	 33.33	-1	1801119..1801463	+	114	29346871	-	BT_1461	-	hypothetical protein
1462	 34.44	-1	1801799..1802248	+	149	29346872	-	BT_1462	-	hypothetical protein
1463	 43.79	0	1802516..1803079	-	187	29346873	-	BT_1463	-	putative acetyltransferase
1464	 39.65	0	1803247..1803705	+	152	29346874	-	BT_1464	-	GNAT family acetyltransferase
1465	 45.35	0	1804059..1806479	-	806	29346875	-	BT_1465	-	putative ABC transporter permease
1466	 47.00	0	1806476..1807192	-	238	29346876	-	BT_1466	-	ABC transporter ATP-binding protein
1467	 47.84	0	1807208..1808455	-	415	29346877	-	BT_1467	-	ABC transporter permease
1468	 45.25	0	1808516..1809757	-	413	29346878	-	BT_1468	-	putative outer membrane efflux protein
1469	 46.33	0	1810150..1811511	+	453	29346879	-	BT_1469	-	two-component system response regulator
1470	 45.48	0	1811517..1812767	+	416	29346880	-	BT_1470	-	putative two-component system sensor histidine kinase
1471	 44.44	0	1812854..1813879	+	341	29346881	-	BT_1471	-	hypothetical protein
1472	 45.78	0	1813936..1815108	+	390	29346882	-	BT_1472	-	hypothetical protein
1473	 45.83	0	1815120..1815575	-	151	29346883	-	BT_1473	-	hypothetical protein
1474	 44.85	0	1815575..1817041	-	488	29346884	-	BT_1474	-	ribosomal protein S6 modification protein-related protein
1475	 45.77	0	1817172..1818329	-	385	29346885	-	BT_1475	-	ABC transporter, permease protein
1476	 48.42	0	1818599..1819798	-	399	29346886	-	BT_1476	-	aspartate aminotransferase
1477	 45.23	0	1819979..1821214	+	411	29346887	-	BT_1477	-	hypothetical protein
1478	 44.01	0	1821304..1822146	-	280	29346888	-	BT_1478	-	putative histidinol-phosphatase
1479	 49.22	+1	1822218..1824086	-	622	29346889	-	BT_1479	-	ABC transporter ATP-binding protein
1480	 47.71	0	1824115..1824921	-	268	29346890	-	BT_1480	-	hypothetical protein
1481	 48.91	+1	1824973..1826166	-	397	29346891	-	BT_1481	-	hypothetical protein
1482	 48.26	0	1826400..1827089	+	229	29346892	-	BT_1482	-	two-component system response regulator
1483	 47.53	0	1827099..1828880	+	593	29346893	-	BT_1483	-	two-component system sensor histidine kinase
1484	 46.63	0	1828912..1830483	-	523	29346894	-	BT_1484	-	hypothetical protein
1485	 44.98	0	1830715..1831650	+	311	29346895	-	BT_1485	-	hypothetical protein
1486	 41.05	0	1832520..1834010	+	496	29346896	-	BT_1486	-	hypothetical protein
1487	 40.31	0	1834031..1835377	+	448	29346897	-	BT_1487	-	hypothetical protein
1488	 46.72	0	1835413..1836234	+	273	29346898	-	BT_1488	-	hypothetical protein
1489	 46.87	0	1836684..1838729	+	681	29346899	-	BT_1489	-	vitamin B12 receptor, outer membrane
1490	 44.23	0	1838760..1840751	+	663	29346900	-	BT_1490	-	putative surface protein
1491	 35.93	-1	1840776..1841546	+	256	29346901	-	BT_1491	-	hypothetical protein
1492	 46.52	0	1841886..1843265	+	459	29346902	tnaA	BT_1492	-	tryptophanase
1493	 39.27	0	1843375..1843677	+	100	29346903	-	BT_1493	-	hypothetical protein
1494	 42.67	0	1843686..1843910	+	74	29346904	-	BT_1494	-	hypothetical protein
1495	 44.39	0	1843983..1844588	-	201	29346905	-	BT_1495	-	siderophore (surfactin) biosynthesis regulatory protein
1496	 42.12	0	1844687..1845745	-	352	29346906	-	BT_1496	-	hemolysin-like protein
1497	 47.12	0	1846114..1846599	-	161	29346907	-	BT_1497	-	single-strand binding protein (SSB)
1498	 46.18	0	1846797..1847870	-	357	29346908	-	BT_1498	-	A/G-specific adenine glycosylase
1499	 35.87	-1	1848053..1848328	+	91	29346909	-	BT_1499	-	DNA-binding protein HU
1500	 46.60	0	1848611..1850185	+	524	29346910	-	BT_1500	-	ribonuclease G
1501	 44.41	0	1850513..1851604	-	363	29346911	-	BT_1501	-	major outer membrane protein OmpA
1502	 39.89	0	1851682..1854519	-	945	29346912	-	BT_1502	-	hypothetical protein
1503	 43.82	0	1855012..1856022	-	336	29346913	-	BT_1503	-	integrase
1504	 39.77	0	1856304..1856567	+	87	29346914	-	BT_1504	-	hypothetical protein
1505	 44.44	0	1856577..1857665	-	362	29346915	-	BT_1505	-	hypothetical protein
1506	 37.80	-1	1857727..1858218	-	163	29346916	-	BT_1506	-	hypothetical protein
1507	 39.86	0	1858305..1861475	-	1056	29346917	-	BT_1507	-	hypothetical protein
1508	 32.95	-2	1861728..1861988	+	86	29346918	-	BT_1508	-	hypothetical protein
1509	 47.17	0	1861969..1862886	-	305	29346919	-	BT_1509	-	integrase
1510	 41.96	0	1863241..1864005	+	254	29346920	-	BT_1510	-	hypothetical protein
1511	 43.84	0	1864461..1865555	-	364	29346921	-	BT_1511	-	outer membrane protein OmpA
1512	 40.24	0	1865735..1869355	-	1206	29346922	-	BT_1512	-	putative surface protein
1513	 45.75	0	1869864..1870781	-	305	29346923	-	BT_1513	-	integrase
1514	 44.67	0	1871179..1871478	+	99	29346924	-	BT_1514	-	hypothetical protein
1515	 45.70	0	1871922..1872560	+	212	29346925	-	BT_1515	-	hypothetical protein
1516	 55.84	+2	1872544..1873929	+	461	29346926	-	BT_1516	-	replicative DNA helicase
1517	 51.04	+1	1874108..1874638	+	176	29346927	-	BT_1517	-	hypothetical protein
1518	 43.46	0	1874996..1875301	+	101	29346928	-	BT_1518	-	hypothetical protein
1519	 50.11	+1	1875315..1875761	+	148	29346929	-	BT_1519	-	N-acetylmuramoyl-L-alanine amidase
1520	 36.56	-1	1875971..1876249	+	92	29346930	-	BT_1520	-	putative transcriptional regulator
1521	 46.02	0	1876252..1877181	-	309	29346931	-	BT_1521	-	hypothetical protein
1522	 46.84	0	1877238..1878155	-	305	29346932	-	BT_1522	-	putative aureobasidin A resistance protein
1523	 45.14	0	1878191..1878859	-	222	29346933	-	BT_1523	-	CDP-diacylglycerol-inositol 3-phosphatidyltransferase
1524	 40.22	0	1878899..1879363	-	154	29346934	-	BT_1524	-	hypothetical protein
1525	 47.29	0	1879378..1879857	-	159	29346935	-	BT_1525	-	phosphatidylglycerophosphatase A
1526	 46.12	0	1880007..1881296	-	429	29346936	-	BT_1526	-	myo-inositol-1-phosphate synthase
1527	 46.77	0	1881405..1883957	-	850	29346937	-	BT_1527	-	hypothetical protein
1528	 48.49	+1	1884065..1885357	-	430	29346938	-	BT_1528	-	two-component system sensor histidine kinase
1529	 50.00	+1	1885379..1886728	-	449	29346939	-	BT_1529	-	two-component system response regulator
1530	 46.11	0	1886797..1888275	-	492	29346940	-	BT_1530	-	putative outer membrane protein OprM precursor
1531	 43.52	0	1888407..1891016	-	869	29346941	-	BT_1531	-	two-component system sensor histidine kinase
1532	 46.33	0	1891100..1892353	-	417	29346942	-	BT_1532	-	ABC transporter permease
1533	 43.88	0	1892386..1893675	-	429	29346943	-	BT_1533	-	hypothetical protein
1534	 41.15	0	1893713..1894339	-	208	29346944	-	BT_1534	-	hypothetical protein
1535	 46.40	0	1894369..1895034	-	221	29346945	-	BT_1535	-	ABC transporter ATP-binding protein
1536	 44.71	0	1895063..1896310	-	415	29346946	-	BT_1536	-	ABC transporter permease
1537	 46.77	0	1896554..1897945	-	463	29346947	-	BT_1537	-	putative NADH dehydrogenase
43.33	MEAN

5.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.