IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
94	 44.65	0	87936..88262	-	108	29345504	-	BT_0094	-	protein found in conjugate transposon
95	 48.48	+1	88274..88570	-	98	29345505	-	BT_0095	-	protein found in conjugate transposon
96	 48.60	+1	88735..89415	-	226	29345506	-	BT_0096	-	hypothetical protein
97	 46.58	0	89417..89854	-	145	29345507	-	BT_0097	-	protein found in conjugate transposon
98	 48.03	0	89859..90620	-	253	29345508	-	BT_0098	-	protein found in conjugate transposon
99	 49.65	+1	91004..91285	+	93	29345509	-	BT_0099	-	hypothetical protein
100	 47.26	0	91305..91742	+	145	29345510	-	BT_0100	-	hypothetical protein
101	 47.46	0	91727..92965	+	412	29345511	-	BT_0101	-	hypothetical protein
102	 42.44	0	92986..94995	+	669	29345512	-	BT_0102	-	hypothetical protein
103	 45.96	0	95169..96704	+	511	29345513	-	BT_0103	-	hypothetical protein
104	 39.15	0	96701..96889	+	62	29345514	-	BT_0104	-	hypothetical protein
105	 48.27	0	96886..98967	+	693	29345515	-	BT_0105	-	DNA topoisomerase I omega subunit
106	 43.85	0	99073..99519	-	148	29345516	-	BT_0106	-	hypothetical protein
107	 41.22	0	99969..100247	-	92	29345517	-	BT_0107	-	hypothetical protein
108	 43.08	0	100303..102303	-	666	29345518	-	BT_0108	-	hypothetical protein
109	 38.61	0	102266..102625	-	119	29345519	-	BT_0109	-	hypothetical protein
110	 32.40	-2	102836..103696	-	286	29345520	-	BT_0110	-	putative regulatory protein
111	 34.52	-1	103864..104115	-	83	29345521	-	BT_0111	-	hypothetical protein
112	 41.06	0	104093..104998	-	301	29345522	-	BT_0112	-	putative permease
113	 37.72	-1	105024..105524	-	166	29345523	-	BT_0113	-	hypothetical protein
114	 43.55	0	105527..106573	-	348	29345524	-	BT_0114	-	putative symporter, arsenic resistance membrane protein
115	 40.79	0	106586..107014	-	142	29345525	-	BT_0115	-	arsenate reductase
116	 40.57	0	107019..108731	-	570	29345526	-	BT_0116	-	arsenical pump-driving ATPase
117	 37.31	-1	108759..109085	-	108	29345527	-	BT_0117	-	arsenical resistance operon trans-acting repressor
118	 37.29	-1	109119..109826	-	235	29345528	-	BT_0118	-	putative cytochrome c biogenesis protein
119	 34.91	-1	109828..110271	-	147	29345529	-	BT_0119	-	hypothetical protein
120	 34.19	-1	110282..110515	-	77	29345530	-	BT_0120	-	hypothetical protein
121	 40.74	0	110593..110862	-	89	29345531	-	BT_0121	-	ArsR family transcriptional regulator
122	 47.82	0	111648..112655	+	335	29345532	-	BT_0122	-	3-oxoacyl-(acyl carrier protein) synthase III
123	 51.57	+1	112706..113182	-	158	29345533	-	BT_0123	-	NADH-ubiquinone oxidoreductase subunit
124	 54.44	+2	113201..114967	-	588	29345534	-	BT_0124	-	NADH:ubiquinone oxidoreductase subunit
125	 52.31	+1	114979..116886	-	635	29345535	-	BT_0125	-	NADH:ubiquinone oxidoreductase subunit
126	 48.17	0	117467..120223	+	918	29345536	-	BT_0126	-	hypothetical protein
127	 39.10	0	120368..123661	+	1097	29345537	-	BT_0127	-	putative transmembrane protein
128	 33.33	-1	123845..124243	+	132	29345538	-	BT_0128	-	hypothetical protein
129	 43.77	0	124349..125536	-	395	29345539	-	BT_0129	-	mannonate dehydratase
130	 46.08	0	125549..126364	-	271	29345540	-	BT_0130	-	D-mannonate oxidoreductase
131	 36.98	-1	126746..127678	+	310	29345541	-	BT_0131	-	putative transposase
132	 42.27	0	127918..129852	+	644	29345542	-	BT_0132	-	alpha-glucosidase, putative
133	 46.64	0	129836..130669	-	277	29345543	murQ	BT_0133	-	N-acetylmuramic acid-6-phosphate etherase
134	 41.93	0	130680..131063	-	127	29345544	-	BT_0134	-	hypothetical protein
135	 44.57	0	131041..131823	-	260	29345545	-	BT_0135	-	hypothetical protein
136	 46.24	0	131976..133586	+	536	29345546	-	BT_0136	-	hypothetical protein
137	 42.83	0	133691..135616	+	641	29345547	-	BT_0137	-	hypothetical protein
138	 44.07	0	135838..138585	+	915	29345548	-	BT_0138	-	transcriptional regulator
139	 41.47	0	139333..139848	+	171	29345549	-	BT_0139	-	RNA polymerase ECF-type sigma factor
140	 40.86	0	139919..143212	+	1097	29345550	-	BT_0140	-	hypothetical protein
141	 41.15	0	143223..144962	+	579	29345551	-	BT_0141	-	hypothetical protein
142	 40.55	0	144992..146377	+	461	29345552	-	BT_0142	-	hypothetical protein
143	 40.60	0	146387..147763	+	458	29345553	-	BT_0143	-	putative transmembrane protein
144	 46.75	0	147968..148198	+	76	29345554	-	BT_0144	-	putative beta-xylosidase
145	 48.73	+1	148359..149618	+	419	29345555	-	BT_0145	-	putative beta-xylosidase
146	 47.58	0	149679..150899	+	406	29345556	-	BT_0146	-	unsaturated glucuronyl hydrolase
147	 44.16	0	150999..151460	-	153	29345557	-	BT_0147	-	hypothetical protein
148	 47.13	0	151535..152824	-	429	29345558	-	BT_0148	-	putative hemolysin
149	 45.98	0	153042..153824	-	260	29345559	-	BT_0149	-	peptidase
150	 50.36	+1	153863..156241	-	792	29345560	-	BT_0150	-	putative ferric aerobactin receptor
151	 47.13	0	156339..156773	+	144	29345561	-	BT_0151	-	hypothetical protein
152	 44.20	0	156800..157618	+	272	29345562	-	BT_0152	-	acetyl esterase (acetylxylosidase)
153	 43.49	0	157983..158858	-	291	29345563	-	BT_0153	-	hypothetical protein
154	 45.84	0	158865..160319	-	484	29345564	-	BT_0154	-	putative periplasmic protease
155	 47.00	0	160649..161716	+	355	29345565	trmU	BT_0155	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
156	 46.46	0	161746..162408	-	220	29345566	-	BT_0156	-	transcriptional regulator
157	 45.01	0	162494..163084	-	196	29345567	-	BT_0157	-	hypothetical protein
158	 48.67	+1	163152..164579	-	475	29345568	-	BT_0158	-	Na(+)/H(+) antiporter
159	 44.33	0	164674..165546	-	290	29345569	-	BT_0159	-	hypothetical protein
160	 45.06	0	165668..166102	-	144	29345570	-	BT_0160	-	hypothetical protein
161	 49.74	+1	166150..167325	-	391	29345571	-	BT_0161	-	putative permease
162	 50.54	+1	167345..169663	-	772	29345572	-	BT_0162	-	penicillin-binding protein 1C (PBP-1c)
163	 48.69	+1	169709..169975	-	88	29345573	-	BT_0163	-	hypothetical protein
164	 50.02	+1	169983..175358	-	1791	29345574	-	BT_0164	-	hypothetical protein
165	 45.02	0	175455..175856	+	133	29345575	-	BT_0165	-	peptidyl-prolyl cis-trans isomerase
166	 42.29	0	175872..176429	+	185	29345576	-	BT_0166	-	putative thiol-disulfide isomerase
167	 33.33	-1	176559..176897	-	112	29345577	-	BT_0167	-	hypothetical protein
168	 30.33	-2	176890..177189	-	99	29345578	-	BT_0168	-	hypothetical protein
169	 42.52	0	177407..178462	-	351	29345579	-	BT_0169	-	hypothetical protein
170	 37.01	-1	178582..178935	-	117	29345580	-	BT_0170	-	hypothetical protein
171	 32.79	-2	179107..180390	-	427	29345581	-	BT_0171	-	hypothetical protein
172	 35.61	-1	180505..180900	-	131	29345582	-	BT_0172	-	hypothetical protein
173	 46.49	0	181926..182936	-	336	29345583	-	BT_0173	-	hypothetical protein
174	 44.59	0	182956..183657	-	233	29345584	-	BT_0174	-	hypothetical protein
175	 40.25	0	183896..184300	+	134	29345585	-	BT_0175	-	hypothetical protein
176	 40.29	0	185073..185561	+	162	29345586	-	BT_0176	-	hypothetical protein
177	 34.72	-1	185638..186429	+	263	29345587	-	BT_0177	-	hypothetical protein
178	 41.76	0	186456..187001	+	181	29345588	-	BT_0178	-	hypothetical protein
179	 38.85	0	187011..187463	+	150	29345589	smpB	BT_0179	-	SsrA-binding protein
180	 45.96	0	187553..190300	+	915	29345590	-	BT_0180	-	5-methyltetrahydrofolate-homocysteine methyltransferase
181	 43.83	0	190313..190912	+	199	29345591	-	BT_0181	-	putative NADH dehydrogenase/NAD(P)H nitroreductase
182	 43.20	0	191106..192656	+	516	29345592	-	BT_0182	-	osmo-regulated proline transporter (Na+/proline symporter)
183	 43.20	0	192751..194139	-	462	29345593	-	BT_0183	-	transglycosylase
184	 44.82	0	194157..194774	-	205	29345594	-	BT_0184	-	uridine kinase
185	 42.67	0	194876..195175	+	99	29345595	-	BT_0185	-	hypothetical protein
186	 44.78	0	195185..197245	+	686	29345596	-	BT_0186	-	thiol:disulfide interchange protein dsbD precursor
187	 43.69	0	197341..198045	-	234	29345597	-	BT_0187	-	hypothetical protein
188	 42.12	0	198238..198840	+	200	29345598	-	BT_0188	-	RNA polymerase ECF-type sigma factor
189	 42.07	0	198928..199911	+	327	29345599	-	BT_0189	-	putative anti-sigma factor
190	 41.99	0	200124..203564	+	1146	29345600	-	BT_0190	-	hypothetical protein
191	 42.31	0	203588..204979	+	463	29345601	-	BT_0191	-	hypothetical protein
192	 43.04	0	205007..206974	+	655	29345602	-	BT_0192	-	cell surface protein
193	 42.06	0	206981..207862	+	293	29345603	-	BT_0193	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.