IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1066	 46.84	0	1353660..1354229	-	189	29346476	-	BT_1066	-	hypothetical protein
1067	 42.53	0	1354244..1356070	-	608	29346477	-	BT_1067	-	hypothetical protein
1068	 32.75	-2	1356084..1356428	-	114	29346478	-	BT_1068	-	hypothetical protein
1069	 45.12	0	1356788..1357330	-	180	29346479	-	BT_1069	-	putative transcriptional regulator
1070	 45.44	0	1357327..1358631	-	434	29346480	-	BT_1070	-	hypothetical protein
1071	 38.97	0	1358635..1359042	-	135	29346481	-	BT_1071	-	hypothetical protein
1072	 37.66	-1	1359724..1360278	+	184	29346482	-	BT_1072	-	hypothetical protein
1073	 39.22	0	1360381..1361025	+	214	29346483	-	BT_1073	-	hypothetical protein
1074	 40.88	0	1361037..1361672	+	211	29346484	-	BT_1074	-	hypothetical protein
1075	 37.38	-1	1361784..1362821	+	345	29346485	-	BT_1075	-	two-component system sensor
1076	 37.95	-1	1362814..1363593	+	259	29346486	-	BT_1076	-	two-component system response regulator
1077	 48.06	0	1363962..1365278	+	438	29346487	-	BT_1077	-	putative aspartate aminotransferase
1078	 43.32	0	1365429..1366019	+	196	29346488	-	BT_1078	-	putative transcriptional regulator
1079	 45.93	0	1366016..1366555	-	179	29346489	-	BT_1079	-	acetyltransferase
1080	 46.67	0	1366562..1367011	-	149	29346490	-	BT_1080	-	hypothetical protein
1081	 50.97	+1	1367048..1367665	-	205	29346491	-	BT_1081	-	recombination protein recR
1082	 51.40	+1	1367892..1369208	+	438	29346492	-	BT_1082	-	Na+/solute symporter
1083	 46.63	0	1369332..1369940	+	202	29346493	-	BT_1083	-	GTPase EngB
1084	 44.33	0	1369947..1370546	+	199	29346494	-	BT_1084	-	hypothetical protein
1085	 42.42	0	1371242..1371637	+	131	29346495	-	BT_1085	-	hypothetical protein
1086	 51.08	+1	1371733..1373721	+	662	29346496	-	BT_1086	-	putative oligopeptide transporter
1087	 51.49	+1	1373723..1375270	+	515	29346497	-	BT_1087	-	putative xylanase
1088	 51.34	+1	1375282..1376214	+	310	29346498	-	BT_1088	-	hypothetical protein
1089	 48.83	+1	1376273..1376956	-	227	29346499	-	BT_1089	-	lipoate-protein ligase B
1090	 44.56	0	1377046..1377882	+	278	29346500	-	BT_1090	-	AraC-type transcription regulator
1091	 49.30	+1	1378180..1380396	-	738	29346501	-	BT_1091	-	cation-transporting ATPase pacS
1092	 44.72	0	1380460..1380819	-	119	29346502	-	BT_1092	-	putative heavy-metal binding protein
1093	 47.74	0	1380843..1381946	-	367	29346503	-	BT_1093	-	putative TonB-dependent outer membrane receptor protein
1094	 37.55	-1	1382238..1382474	-	78	29346504	-	BT_1094	-	hypothetical protein
1095	 54.49	+2	1382888..1383199	-	103	29346505	-	BT_1095	-	hypothetical protein
1096	 38.28	0	1383208..1383672	-	154	29346506	-	BT_1096	-	transposase
1097	 41.18	0	1383849..1384103	-	84	29346507	-	BT_1097	-	hypothetical protein
1098	 40.97	0	1385256..1385792	-	178	29346508	mgsA	BT_1098	-	methylglyoxal synthase
1099	 44.07	0	1385847..1386656	-	269	29346509	-	BT_1099	-	putative arginase
1100	 46.74	0	1386673..1389231	-	852	29346510	-	BT_1100	-	alpha-glucan phosphorylase
1101	 45.08	0	1389253..1391499	-	748	29346511	-	BT_1101	-	putative sodium/proton antiporter
1102	 49.19	+1	1391513..1392496	-	327	29346512	pfkA	BT_1102	-	6-phosphofructokinase
1103	 37.98	-1	1392562..1393056	-	164	29346513	-	BT_1103	-	RNA polymerase ECF-type sigma factor
1104	 41.03	0	1393103..1393531	-	142	29346514	-	BT_1104	-	small heat shock protein
1105	 47.87	0	1393599..1394348	-	249	29346515	-	BT_1105	-	phosphoglyceromutase
1106	 47.52	0	1394362..1395411	-	349	29346516	-	BT_1106	-	fructose-bisphosphate aldolase
1107	 44.31	0	1395440..1395922	-	160	29346517	-	BT_1107	-	ferritin A
1108	 38.43	0	1395973..1396698	-	241	29346518	-	BT_1108	-	putative integral membrane protein
1109	 39.51	0	1396723..1397175	-	150	29346519	-	BT_1109	-	ferritin A
1110	 38.57	0	1397337..1397546	-	69	29346520	-	BT_1110	-	hypothetical protein
1111	 36.04	-1	1397724..1397945	+	73	29346521	-	BT_1111	-	hypothetical protein
1112	 49.66	+1	1399205..1399498	+	97	29346522	-	BT_1112	-	transposase
1113	 40.46	0	1400017..1400367	-	116	29346523	-	BT_1113	-	flavodoxin
1114	 48.06	0	1400600..1401631	-	343	29346524	-	BT_1114	-	hypothetical protein
1115	 51.08	+1	1401639..1402793	-	384	29346525	-	BT_1115	-	aldo/keto reductase
1116	 40.32	0	1402938..1403495	-	185	29346526	-	BT_1116	-	hypothetical protein
1117	 32.51	-2	1403593..1403958	-	121	29346527	-	BT_1117	-	hypothetical protein
1118	 44.01	0	1403968..1405560	-	530	29346528	-	BT_1118	-	hypothetical protein
1119	 41.68	0	1405597..1408293	-	898	29346529	-	BT_1119	-	hypothetical protein
1120	 40.42	0	1409009..1409248	+	79	29346530	-	BT_1120	-	hypothetical protein
1121	 50.00	+1	1409462..1411069	-	535	29346531	-	BT_1121	-	hypothetical protein
1122	 42.34	0	1411094..1412248	-	384	29346532	-	BT_1122	-	hypothetical protein
1123	 43.32	0	1412528..1413448	+	306	29346533	-	BT_1123	-	transcriptional regulator
1124	 46.82	0	1413517..1414443	-	308	29346534	-	BT_1124	-	putative integrase
1125	 53.81	+2	1414451..1415212	-	253	29346535	-	BT_1125	-	hypothetical protein
1126	 52.37	+1	1415242..1416192	-	316	29346536	-	BT_1126	-	mobilization protein BmgA
1127	 56.61	+2	1416167..1416733	-	188	29346537	-	BT_1127	-	mobilization protein BmgB
1128	 59.54	+2	1416853..1417287	+	144	29346538	-	BT_1128	-	hypothetical protein
1129	 58.01	+2	1417749..1418060	+	103	29346539	-	BT_1129	-	hypothetical protein
1130	 57.72	+2	1418104..1418427	+	107	29346540	-	BT_1130	-	hypothetical protein
1131	 45.16	0	1418623..1418808	+	61	29346541	-	BT_1131	-	hypothetical protein
1132	 57.11	+2	1418781..1419230	+	149	29346542	-	BT_1132	-	hypothetical protein
1133	 51.16	+1	1419376..1419936	-	186	29346543	-	BT_1133	-	hypothetical protein
1134	 42.78	0	1420174..1420554	-	126	29346544	-	BT_1134	-	hypothetical protein
1135	 42.00	0	1420882..1421481	-	199	29346545	-	BT_1135	-	hypothetical protein
1136	 41.78	0	1421491..1421703	+	70	29346546	-	BT_1136	-	hypothetical protein
1137	 55.81	+2	1421853..1422119	+	88	29346547	-	BT_1137	-	hypothetical protein
1138	 56.23	+2	1422161..1423396	-	411	29346548	-	BT_1138	-	transposase
1139	 48.16	0	1423594..1424652	-	352	29346549	-	BT_1139	-	hypothetical protein
1140	 44.86	0	1424803..1425201	-	132	29346550	-	BT_1140	-	hypothetical protein
1141	 42.42	0	1425511..1426434	+	307	29346551	-	BT_1141	-	cation efflux family protein
1142	 43.62	0	1426444..1426929	-	161	29346552	-	BT_1142	-	hypothetical protein
1143	 42.79	0	1427144..1427344	-	66	29346553	-	BT_1143	-	hypothetical protein
1144	 46.48	0	1427603..1428454	+	283	29346554	-	BT_1144	-	hypothetical protein
1145	 47.50	0	1428568..1429188	+	206	29346555	gidB	BT_1145	-	glucose-inhibited division protein B
1146	 48.04	0	1429237..1429848	+	203	29346556	-	BT_1146	-	putative metallo-beta-lactamase
1147	 49.33	+1	1429971..1432820	+	949	29346557	-	BT_1147	-	glycine dehydrogenase
1148	 44.39	0	1433023..1433592	-	189	29346558	-	BT_1148	-	putative NADH dehydrogenase/NAD(P)H nitroreductase
1149	 45.12	0	1433635..1434720	-	361	29346559	-	BT_1149	-	Type II restriction enzyme HpaII
1150	 42.86	0	1434742..1435350	-	202	29346560	-	BT_1150	-	hypothetical protein
1151	 43.83	0	1435606..1436853	-	415	29346561	-	BT_1151	-	hypothetical protein
1152	 46.47	0	1437011..1437931	-	306	29346562	-	BT_1152	-	D-3-phosphoglycerate dehydrogenase
1153	 43.82	0	1438046..1439113	-	355	29346563	-	BT_1153	-	phosphoserine aminotransferase
1154	 45.32	0	1439688..1441022	-	444	29346564	-	BT_1154	-	ATP-independent RNA helicase
1155	 46.57	0	1441178..1442446	-	422	29346565	-	BT_1155	-	Na(+)-translocating NADH-quinone reductase subunit F
1156	 46.73	0	1442471..1443097	-	208	29346566	-	BT_1156	-	Na(+)-translocating NADH-quinone reductase subunit E
1157	 43.93	0	1443181..1443822	-	213	29346567	-	BT_1157	-	Na(+)-translocating NADH-quinone reductase subunit D
1158	 42.14	0	1443843..1444523	-	226	29346568	-	BT_1158	-	Na(+)-translocating NADH-quinone reductase subunit C
1159	 48.76	+1	1444530..1445702	-	390	29346569	-	BT_1159	-	Na(+)-translocating NADH-quinone reductase subunit B
1160	 49.56	+1	1445751..1447100	-	449	29346570	-	BT_1160	-	Na(+)-translocating NADH-quinone reductase subunit A
1161	 49.54	+1	1447289..1448689	-	466	29346571	-	BT_1161	-	putative aminopeptidase C
1162	 48.21	0	1448891..1450120	+	409	29346572	-	BT_1162	-	hypothetical protein
1163	 41.20	0	1450246..1450995	+	249	29346573	-	BT_1163	-	hypothetical protein
1164	 38.31	0	1451006..1453234	+	742	29346574	-	BT_1164	-	hypothetical protein
1165	 40.94	0	1453338..1454705	+	455	29346575	-	BT_1165	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.