IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
465	 47.52	0	518218..518499	+	93	16077532	ydcD	BSU04650	-	hypothetical protein
466	 42.45	0	518504..518854	+	116	16077533	ydcE	BSU04660	-	hypothetical protein
467	 43.27	0	518969..519793	+	274	16077534	rsbR	BSU04670	-	positive regulation of sigma-B activity in response to salt and heat stress
468	 44.26	0	519798..520163	+	121	16077535	rsbS	BSU04680	-	antagonist of RsbT
469	 48.01	+1	520167..520568	+	133	16077536	rsbT	BSU04690	-	switch protein/serine-threonine kinase
470	 42.56	0	520580..521587	+	335	16077537	rsbU	BSU04700	-	serine phosphatase
471	 41.21	0	521649..521978	+	109	16077538	rsbV	BSU04710	-	anti-anti-sigma factor (antagonist of RsbW)
472	 44.31	0	521975..522457	+	160	16077539	rsbW	BSU04720	-	serine-protein kinase RsbW
473	 45.28	0	522417..523211	+	264	16077540	sigB	BSU04730	-	RNA polymerase sigma factor SigB
474	 41.83	0	523211..523810	+	199	16077541	rsbX	BSU04740	-	serine phosphatase
475	 42.18	0	524053..524346	+	97	16077542	ydcF	BSU04750	-	hypothetical protein
476	 41.04	0	524343..524783	+	146	16077543	ydcG	BSU04760	-	hypothetical protein
477	 44.37	0	524767..525210	+	147	16077544	ydcH	BSU04770	-	hypothetical protein
478	 45.74	0	525304..527463	+	719	50812188	ydcI	BSU04780	-	hypothetical protein
479	 41.94	0	527690..528142	+	150	16077546	ydcK	BSU04790	-	hypothetical protein
480	 31.26	-2	529066..530172	-	368	16077547	ydcL	BSU04800	-	hypothetical protein
481	 31.57	-2	530185..530694	-	169	16077548	ydcM	BSU04810	-	hypothetical protein
482	 33.33	-2	530691..531074	-	127	16077549	ydcN	BSU04820	-	hypothetical protein
483	 34.87	-1	531348..531542	+	64	16077550	sacV	BSU04830	-	transcriptional regulator
484	 33.72	-2	531853..532113	+	86	16077551	ydcO	BSU04840	-	hypothetical protein
485	 38.58	-1	532483..532863	+	126	16077552	ydcP	BSU04850	-	hypothetical protein
486	 39.43	0	532899..534341	+	480	16077553	ydcQ	BSU04860	-	hypothetical protein
487	 38.62	-1	534334..535392	+	352	16077554	ydcR	BSU04870	-	hypothetical protein
488	 32.59	-2	535657..535926	+	89	16077555	ydcS	BSU04880	-	hypothetical protein
489	 36.70	-1	535965..536231	+	88	16077556	ydcT	BSU04890	-	hypothetical protein
490	 35.92	-1	536248..536556	+	102	16077557	yddA	BSU04900	-	hypothetical protein
491	 35.68	-1	536546..537610	+	354	16077558	yddB	BSU04910	-	hypothetical protein
492	 40.56	0	537622..537870	+	82	16077559	yddC	BSU04920	-	hypothetical protein
493	 36.76	-1	537883..538407	+	174	16077560	yddD	BSU04930	-	hypothetical protein
494	 39.02	0	538295..540790	+	831	16077561	yddE	BSU04940	-	hypothetical protein
495	 34.56	-1	540809..541135	+	108	16077562	yddF	BSU04950	-	hypothetical protein
496	 38.52	-1	541139..543586	+	815	16077563	yddG	BSU04960	-	hypothetical protein
497	 41.31	0	543583..544572	+	329	16077564	yddH	BSU04970	-	hypothetical protein
498	 34.32	-1	544587..545093	+	168	16077565	yddI	BSU04980	-	hypothetical protein
499	 33.60	-2	545156..545536	+	126	16077566	yddJ	BSU04990	-	hypothetical protein
500	 29.71	-2	545727..546527	-	266	16077567	yddK	BSU05000	-	hypothetical protein
501	 30.78	-2	546867..548042	+	391	16077568	rapI	BSU05010	-	response regulator aspartate phosphatase
502	 35.83	-1	547999..548118	+	39	16077569	phrI	BSU05020	-	regulator of the activity of phosphatase RapI
503	 29.62	-2	548271..549212	+	313	16077570	yddM	BSU05030	-	hypothetical protein
504	 38.33	-1	549783..550802	-	339	16077571	yddN	BSU05040	-	hypothetical protein
505	 29.68	-2	551062..551472	+	136	16077572	lrpA	BSU05050	-	AsnC/Lrp family transcriptional regulator
506	 31.56	-2	551595..552044	-	149	16077573	lrpB	BSU05060	-	AsnC/Lrp family transcriptional regulator
507	 37.57	-1	552159..552701	+	180	16077574	yddQ	BSU05070	-	hypothetical protein
508	 34.64	-1	553254..554018	+	254	16077575	yddR	BSU05080	-	hypothetical protein
509	 40.12	0	554212..555522	+	436	16077576	yddS	BSU05090	-	hypothetical protein
510	 35.37	-1	556306..556992	+	228	16077577	yddT	BSU05100	-	hypothetical protein
511	 32.15	-2	557952..558545	+	197	16077578	ydeA	BSU05110	-	hypothetical protein
512	 39.80	0	558808..559008	+	66	16077579	cspC	BSU05120	-	cold-shock protein
513	 32.47	-2	559695..560156	-	153	16077580	ydeB	BSU05130	-	hypothetical protein
514	 37.55	-1	560724..560960	-	78	16077581	ydzE	BSU05140	-	hypothetical protein
515	 34.47	-1	561058..561933	-	291	16077582	ydeC	BSU05150	-	hypothetical protein
516	 39.58	0	562046..563005	+	319	16077583	ydeD	BSU05160	-	hypothetical protein
517	 37.92	-1	563158..564030	-	290	16077584	ydeE	BSU05170	-	hypothetical protein
518	 40.92	0	564248..565645	+	465	16077585	ydeF	BSU05180	-	hypothetical protein
519	 44.08	0	565755..567047	+	430	16077586	ydeG	BSU05190	-	hypothetical protein
520	 34.45	-1	567206..567652	+	148	16077587	ydeH	BSU05200	-	hypothetical protein
521	 36.36	-1	567889..568482	+	197	16077588	ydeI	BSU05210	-	hypothetical protein
522	 41.36	0	568834..569493	-	219	16077589	ydeJ	BSU05220	-	hypothetical protein
523	 53.36	+2	569915..570778	-	287	16077590	ydeK	BSU05230	-	hypothetical protein
524	 41.81	0	570933..572324	+	463	16077591	ydeL	BSU05240	-	hypothetical protein
525	 34.74	-1	572518..572943	+	141	16077592	ydeM	BSU05250	-	hypothetical protein
526	 41.54	0	572996..573568	-	190	16077593	ydeN	BSU05260	-	hypothetical protein
527	 44.55	0	573650..573979	-	109	16077594	ydzF	BSU05270	-	hypothetical protein
528	 40.78	0	574234..575106	+	290	16077595	ydeO	BSU05280	-	hypothetical protein
529	 39.53	0	575256..575642	-	128	16077596	ydeP	BSU05290	-	hypothetical protein
530	 42.42	0	575753..576346	+	197	16077597	ydeQ	BSU05300	-	hypothetical protein
531	 46.97	0	576490..577677	-	395	16077598	ydeR	BSU05310	-	hypothetical protein
532	 46.40	0	577881..578477	+	198	16077599	ydeS	BSU05320	-	hypothetical protein
533	 37.80	-1	579085..579420	+	111	16077600	ydeT	BSU05330	-	hypothetical protein
534	 40.52	0	579433..580740	+	435	16077601	ydfA	BSU05340	-	hypothetical protein
535	 36.51	-1	581238..582023	+	261	16077602	ydfB	BSU05350	-	hypothetical protein
536	 41.37	0	582080..583000	-	306	16077603	ydfC	BSU05360	-	hypothetical protein
537	 40.17	0	583133..584581	+	482	16077604	ydfD	BSU05370	-	hypothetical protein
538	 39.58	0	584699..585322	-	207	16077605	ydfE	BSU05380	-	hypothetical protein
539	 42.58	0	585412..586092	+	226	16077606	ydfF	BSU05390	-	hypothetical protein
540	 40.77	0	586172..586615	-	147	16077607	ydfG	BSU05400	-	hypothetical protein
541	 40.69	0	587288..588511	+	407	16077608	ydfH	BSU05410	-	hypothetical protein
542	 39.25	0	588504..589145	+	213	16077609	ydfI	BSU05420	-	hypothetical protein
543	 42.44	0	589261..591435	+	724	16077610	ydfJ	BSU05430	-	hypothetical protein
544	 42.64	0	591847..592749	-	300	16077611	nap	BSU05440	-	carboxylesterase Na
545	 41.45	0	592951..593640	-	229	16077612	ydfK	BSU05450	-	hypothetical protein
546	 36.65	-1	593730..594542	-	270	16077613	ydfL	BSU05460	-	hypothetical protein
547	 42.84	0	594653..595546	-	297	16077614	ydfM	BSU05470	-	hypothetical protein
548	 41.87	0	596022..596642	+	206	16077615	ydfN	BSU05480	-	hypothetical protein
549	 47.18	0	596658..597596	+	312	16077616	ydfO	BSU05490	-	hypothetical protein
550	 44.36	0	597698..598087	+	129	16077617	ydfP	BSU05500	-	hypothetical protein
551	 38.64	-1	598273..598611	+	112	16077618	ydfQ	BSU05510	-	hypothetical protein
552	 37.13	-1	598651..598887	-	78	16077619	ydzH	BSU05520	-	hypothetical protein
553	 40.12	0	599773..600450	-	225	16077620	ydfR	BSU05530	-	hypothetical protein
554	 37.99	-1	600563..601270	+	235	16077621	ydfS	BSU05540	-	hypothetical protein
555	 40.05	0	601285..601716	-	143	16077622	cotP	BSU05550	-	spore coat protein
556	 39.92	0	601729..601971	-	80	16077623	ydgA	BSU05560	-	hypothetical protein
557	 39.93	0	601985..602257	-	90	16077624	ydgB	BSU05570	-	hypothetical protein
558	 41.67	0	602556..603143	+	195	16077625	ydgC	BSU05580	-	hypothetical protein
559	 43.19	0	603140..603484	+	114	16077626	ydgD	BSU05590	-	hypothetical protein
560	 45.15	0	603647..604120	+	157	16077627	ydgE	BSU05600	-	hypothetical protein
561	 43.98	0	604280..605923	-	547	16077628	expZ	BSU05610	-	ATP-binding transport protein
562	 44.30	0	606243..607619	-	458	16077629	ydgF	BSU05620	-	hypothetical protein
563	 41.81	0	607791..608309	-	172	16077630	dinB	BSU05630	-	nuclease inhibitor
564	 41.61	0	608478..608936	+	152	16077631	ydgG	BSU05640	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.