IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
428	 44.84	0	479570..480421	+	283	16077495	ydaK	BSU04280	-	hypothetical protein
429	 46.08	0	480432..482141	+	569	16077496	ydaL	BSU04290	-	hypothetical protein
430	 45.21	0	482134..483396	+	420	16077497	ydaM	BSU04300	-	hypothetical protein
431	 45.83	0	483402..485513	+	703	16077498	ydaN	BSU04310	-	hypothetical protein
432	 46.33	0	485989..487812	+	607	16077499	ydaO	BSU04320	-	hypothetical protein
433	 49.78	+1	487871..488320	+	149	16077500	mutT	BSU04330	-	mutator protein
434	 50.20	+1	488387..490111	+	574	16077501	ydaP	BSU04340	-	pyruvate oxidase
435	 41.58	0	490288..490578	+	96	16077502	ydaQ	BSU04350	-	hypothetical protein
436	 48.28	+1	490702..491979	-	425	16077503	mntH	BSU04360	-	manganese transport protein MntH
437	 54.26	+2	492209..492466	-	85	16077504	ydaS	BSU04370	-	hypothetical protein
438	 46.80	0	492544..492996	-	150	16077505	ydaT	BSU04380	-	hypothetical protein
439	 46.76	0	493114..493932	+	272	16077506	ydbA	BSU04390	-	hypothetical protein
440	 42.20	0	494061..494432	+	123	16077507	gsiB	BSU04400	-	general stress protein
441	 48.25	+1	494564..494905	+	113	16077508	ydbB	BSU04410	-	hypothetical protein
442	 45.28	0	494899..495258	+	119	16077509	ydbC	BSU04420	-	hypothetical protein
443	 49.15	+1	495295..496116	-	273	16077510	ydbD	BSU04430	-	hypothetical protein
444	 43.78	0	496207..497259	-	350	16077511	dctB	BSU04440	-	C4-dicarboxylate binding protein
445	 46.58	0	497329..498936	+	535	16077512	dctS	BSU04450	-	two-component sensor histidine kinase
446	 46.70	0	498926..499606	+	226	16077513	dctR	BSU04460	-	two-component response regulator
447	 45.97	0	499727..500992	+	421	16077514	dctP	BSU04470	-	C4-dicarboxylate transporter DctA
448	 43.78	0	501140..502192	+	350	16077515	ydbI	BSU04480	-	hypothetical protein
449	 47.03	0	502469..503395	+	308	16077516	ydbJ	BSU04490	-	hypothetical protein
450	 41.97	0	503415..504155	+	246	16077517	ydbK	BSU04500	-	hypothetical protein
451	 43.15	0	504250..504585	+	111	16077518	ydbL	BSU04510	-	hypothetical protein
452	 50.26	+1	504713..505858	+	381	16077519	ydbM	BSU04520	-	hypothetical protein
453	 43.33	0	505883..506062	-	59	16077520	ydbN	BSU04530	-	hypothetical protein
454	 45.70	0	506427..507299	+	290	16077521	ydbO	BSU04540	-	hypothetical protein
455	 38.63	-1	507314..507634	-	106	16077522	ydbP	BSU04550	-	hypothetical protein
456	 46.85	0	507809..508873	+	354	16077523	ddl	BSU04560	-	D-alanyl-alanine synthetase A
457	 47.02	0	508945..510318	+	457	16077524	murF	BSU04570	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase
458	 45.44	0	510667..512202	+	511	16077525	ydbR	BSU04580	-	hypothetical protein
459	 47.08	0	512375..512854	+	159	16077526	ydbS	BSU04590	-	hypothetical protein
460	 44.13	0	512844..514325	+	493	16077527	ydbT	BSU04600	-	hypothetical protein
461	 45.50	0	514577..515176	-	199	16077528	ydcA	BSU04610	-	hypothetical protein
462	 48.63	+1	515271..515636	+	121	16077529	acpS	BSU04620	-	4'-phosphopantetheinyl transferase
463	 41.71	0	515697..516818	+	373	16077530	ydcC	BSU04630	-	hypothetical protein
464	 47.86	0	516933..518102	+	389	16077531	alr	BSU04640	-	D-alanine racemase
465	 47.52	0	518218..518499	+	93	16077532	ydcD	BSU04650	-	hypothetical protein
466	 42.45	0	518504..518854	+	116	16077533	ydcE	BSU04660	-	hypothetical protein
467	 43.27	0	518969..519793	+	274	16077534	rsbR	BSU04670	-	positive regulation of sigma-B activity in response to salt and heat stress
468	 44.26	0	519798..520163	+	121	16077535	rsbS	BSU04680	-	antagonist of RsbT
469	 48.01	+1	520167..520568	+	133	16077536	rsbT	BSU04690	-	switch protein/serine-threonine kinase
470	 42.56	0	520580..521587	+	335	16077537	rsbU	BSU04700	-	serine phosphatase
471	 41.21	0	521649..521978	+	109	16077538	rsbV	BSU04710	-	anti-anti-sigma factor (antagonist of RsbW)
472	 44.31	0	521975..522457	+	160	16077539	rsbW	BSU04720	-	serine-protein kinase RsbW
473	 45.28	0	522417..523211	+	264	16077540	sigB	BSU04730	-	RNA polymerase sigma factor SigB
474	 41.83	0	523211..523810	+	199	16077541	rsbX	BSU04740	-	serine phosphatase
475	 42.18	0	524053..524346	+	97	16077542	ydcF	BSU04750	-	hypothetical protein
476	 41.04	0	524343..524783	+	146	16077543	ydcG	BSU04760	-	hypothetical protein
477	 44.37	0	524767..525210	+	147	16077544	ydcH	BSU04770	-	hypothetical protein
478	 45.74	0	525304..527463	+	719	50812188	ydcI	BSU04780	-	hypothetical protein
479	 41.94	0	527690..528142	+	150	16077546	ydcK	BSU04790	-	hypothetical protein
480	 31.26	-2	529066..530172	-	368	16077547	ydcL	BSU04800	-	hypothetical protein
481	 31.57	-2	530185..530694	-	169	16077548	ydcM	BSU04810	-	hypothetical protein
482	 33.33	-2	530691..531074	-	127	16077549	ydcN	BSU04820	-	hypothetical protein
483	 34.87	-1	531348..531542	+	64	16077550	sacV	BSU04830	-	transcriptional regulator
484	 33.72	-2	531853..532113	+	86	16077551	ydcO	BSU04840	-	hypothetical protein
485	 38.58	-1	532483..532863	+	126	16077552	ydcP	BSU04850	-	hypothetical protein
486	 39.43	0	532899..534341	+	480	16077553	ydcQ	BSU04860	-	hypothetical protein
487	 38.62	-1	534334..535392	+	352	16077554	ydcR	BSU04870	-	hypothetical protein
488	 32.59	-2	535657..535926	+	89	16077555	ydcS	BSU04880	-	hypothetical protein
489	 36.70	-1	535965..536231	+	88	16077556	ydcT	BSU04890	-	hypothetical protein
490	 35.92	-1	536248..536556	+	102	16077557	yddA	BSU04900	-	hypothetical protein
491	 35.68	-1	536546..537610	+	354	16077558	yddB	BSU04910	-	hypothetical protein
492	 40.56	0	537622..537870	+	82	16077559	yddC	BSU04920	-	hypothetical protein
493	 36.76	-1	537883..538407	+	174	16077560	yddD	BSU04930	-	hypothetical protein
494	 39.02	0	538295..540790	+	831	16077561	yddE	BSU04940	-	hypothetical protein
495	 34.56	-1	540809..541135	+	108	16077562	yddF	BSU04950	-	hypothetical protein
496	 38.52	-1	541139..543586	+	815	16077563	yddG	BSU04960	-	hypothetical protein
497	 41.31	0	543583..544572	+	329	16077564	yddH	BSU04970	-	hypothetical protein
498	 34.32	-1	544587..545093	+	168	16077565	yddI	BSU04980	-	hypothetical protein
499	 33.60	-2	545156..545536	+	126	16077566	yddJ	BSU04990	-	hypothetical protein
500	 29.71	-2	545727..546527	-	266	16077567	yddK	BSU05000	-	hypothetical protein
501	 30.78	-2	546867..548042	+	391	16077568	rapI	BSU05010	-	response regulator aspartate phosphatase
502	 35.83	-1	547999..548118	+	39	16077569	phrI	BSU05020	-	regulator of the activity of phosphatase RapI
503	 29.62	-2	548271..549212	+	313	16077570	yddM	BSU05030	-	hypothetical protein
504	 38.33	-1	549783..550802	-	339	16077571	yddN	BSU05040	-	hypothetical protein
505	 29.68	-2	551062..551472	+	136	16077572	lrpA	BSU05050	-	AsnC/Lrp family transcriptional regulator
506	 31.56	-2	551595..552044	-	149	16077573	lrpB	BSU05060	-	AsnC/Lrp family transcriptional regulator
507	 37.57	-1	552159..552701	+	180	16077574	yddQ	BSU05070	-	hypothetical protein
508	 34.64	-1	553254..554018	+	254	16077575	yddR	BSU05080	-	hypothetical protein
509	 40.12	0	554212..555522	+	436	16077576	yddS	BSU05090	-	hypothetical protein
510	 35.37	-1	556306..556992	+	228	16077577	yddT	BSU05100	-	hypothetical protein
511	 32.15	-2	557952..558545	+	197	16077578	ydeA	BSU05110	-	hypothetical protein
512	 39.80	0	558808..559008	+	66	16077579	cspC	BSU05120	-	cold-shock protein
513	 32.47	-2	559695..560156	-	153	16077580	ydeB	BSU05130	-	hypothetical protein
514	 37.55	-1	560724..560960	-	78	16077581	ydzE	BSU05140	-	hypothetical protein
515	 34.47	-1	561058..561933	-	291	16077582	ydeC	BSU05150	-	hypothetical protein
516	 39.58	0	562046..563005	+	319	16077583	ydeD	BSU05160	-	hypothetical protein
517	 37.92	-1	563158..564030	-	290	16077584	ydeE	BSU05170	-	hypothetical protein
518	 40.92	0	564248..565645	+	465	16077585	ydeF	BSU05180	-	hypothetical protein
519	 44.08	0	565755..567047	+	430	16077586	ydeG	BSU05190	-	hypothetical protein
520	 34.45	-1	567206..567652	+	148	16077587	ydeH	BSU05200	-	hypothetical protein
521	 36.36	-1	567889..568482	+	197	16077588	ydeI	BSU05210	-	hypothetical protein
522	 41.36	0	568834..569493	-	219	16077589	ydeJ	BSU05220	-	hypothetical protein
523	 53.36	+2	569915..570778	-	287	16077590	ydeK	BSU05230	-	hypothetical protein
524	 41.81	0	570933..572324	+	463	16077591	ydeL	BSU05240	-	hypothetical protein
525	 34.74	-1	572518..572943	+	141	16077592	ydeM	BSU05250	-	hypothetical protein
526	 41.54	0	572996..573568	-	190	16077593	ydeN	BSU05260	-	hypothetical protein
527	 44.55	0	573650..573979	-	109	16077594	ydzF	BSU05270	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.