IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
385	 45.85	0	437042..437920	-	292	16077453	ycnC	BSU03850	-	hypothetical protein
386	 47.73	0	438084..438833	-	249	16077454	ycnD	BSU03860	-	hypothetical protein
387	 42.36	0	438850..439137	-	95	16077455	ycnE	BSU03870	-	hypothetical protein
388	 46.35	0	439277..439591	+	104	16077456	yczG	BSU03880	-	hypothetical protein
389	 48.96	+1	439593..441032	-	479	16077457	gabR	BSU03890	-	GntR family transcriptional regulator
390	 50.72	+1	441139..442449	+	436	16077458	gabT	BSU03900	-	4-aminobutyrate aminotransferase
391	 50.11	+1	442518..443906	+	462	16077459	gabD	BSU03910	-	succinate-semialdehyde dehydrogenase
392	 45.49	0	444029..444892	+	287	16077460	glcU	BSU03920	-	glucose uptake
393	 46.95	0	444912..445697	+	261	16077461	gdh	BSU03930	-	glucose-1-dehydrogenase
394	 47.80	0	445742..446356	-	204	16077462	ycnI	BSU03940	-	hypothetical protein
395	 48.65	+1	446369..447994	-	541	16077463	ycnJ	BSU03950	-	hypothetical protein
396	 48.17	+1	448029..448601	-	190	16077464	ycnK	BSU03960	-	hypothetical protein
397	 47.74	0	448766..449119	+	117	16077465	ycnL	BSU03970	-	hypothetical protein
398	 47.19	0	449292..451124	+	610	16077466	mtlA	BSU03980	-	phosphotransferase system (PTS) mannitol-specific enzyme IICBA component
399	 48.41	+1	451177..452277	+	366	16077467	mtlD	BSU03990	-	mannitol-1-phosphate 5-dehydrogenase
400	 49.58	+1	452385..453449	+	354	50812181	ycsA	BSU04000	-	tartrate dehydrogenase
401	 39.18	0	453584..454147	+	187	16077469	sipU	BSU04010	-	type I signal peptidase
402	 46.42	0	454257..454814	-	185	16077470	yczH	BSU04020	-	hypothetical protein
403	 47.33	0	454900..455292	+	130	50812182	ycsD	BSU04030	-	hypothetical protein
404	 46.40	0	455622..456371	+	249	16077472	ycsE	BSU04040	-	hypothetical protein
405	 48.32	+1	456576..457349	+	257	50812183	ycsF	BSU04050	-	hypothetical protein
406	 47.57	0	457364..458578	+	404	50812184	ycsG	BSU04060	-	hypothetical protein
407	 52.53	+1	458584..459375	+	263	50812185	ycsI	BSU04070	-	hypothetical protein
408	 48.96	+1	459419..460141	+	240	50812186	kipI	BSU04080	-	inhibtion of the autophosphorylation reaction of KinA
409	 51.97	+1	460144..461157	+	337	50812187	kipA	BSU04090	-	antagonist of KipI
410	 49.93	+1	461173..461913	+	246	16077477	kipR	BSU04100	-	IclR family transcriptional regulator
411	 45.02	0	461988..462629	+	213	16077478	ycsK	BSU04110	-	hypothetical protein
412	 38.62	-1	462802..463047	+	81	16077479	yczI	BSU04120	-	hypothetical protein
413	 47.22	0	463053..463340	-	95	16077480	yczJ	BSU04130	-	hypothetical protein
414	 44.59	0	463491..465497	+	668	16077481	pbpC	BSU04140	-	penicillin-binding protein 3
415	 48.62	+1	465599..466501	+	300	16077482	ycsN	BSU04150	-	hypothetical protein
416	 45.08	0	466687..468771	+	694	16077483	mtlR	BSU04160	-	transcriptional regulator
417	 44.64	0	468982..470379	+	465	16077484	ydaB	BSU04170	-	hypothetical protein
418	 47.80	0	470514..471059	-	181	16077485	ydaC	BSU04180	-	hypothetical protein
419	 48.08	+1	471267..472127	+	286	16077486	ydaD	BSU04190	-	short chain dehydrogenase
420	 49.21	+1	472143..472646	+	167	16077487	ydaE	BSU04200	-	hypothetical protein
421	 49.82	+1	472731..473282	+	183	16077488	ydaF	BSU04210	-	hypothetical protein
422	 42.79	0	473360..473782	+	140	16077489	ydaG	BSU04220	-	hypothetical protein
423	 46.05	0	474288..475097	+	269	16077490	ydaH	BSU04230	-	hypothetical protein
424	 47.77	0	475141..475431	-	96	16077491	ydzA	BSU04240	-	hypothetical protein
425	 45.29	0	475616..476050	+	144	16077492	lrpC	BSU04250	-	AsnC/Lrp family transcriptional regulator
426	 48.26	+1	476115..478298	+	727	16077493	topB	BSU04260	-	DNA topoisomerase III
427	 44.44	0	478501..479589	+	362	16077494	ydaJ	BSU04270	-	hypothetical protein
428	 44.84	0	479570..480421	+	283	16077495	ydaK	BSU04280	-	hypothetical protein
429	 46.08	0	480432..482141	+	569	16077496	ydaL	BSU04290	-	hypothetical protein
430	 45.21	0	482134..483396	+	420	16077497	ydaM	BSU04300	-	hypothetical protein
431	 45.83	0	483402..485513	+	703	16077498	ydaN	BSU04310	-	hypothetical protein
432	 46.33	0	485989..487812	+	607	16077499	ydaO	BSU04320	-	hypothetical protein
433	 49.78	+1	487871..488320	+	149	16077500	mutT	BSU04330	-	mutator protein
434	 50.20	+1	488387..490111	+	574	16077501	ydaP	BSU04340	-	pyruvate oxidase
435	 41.58	0	490288..490578	+	96	16077502	ydaQ	BSU04350	-	hypothetical protein
436	 48.28	+1	490702..491979	-	425	16077503	mntH	BSU04360	-	manganese transport protein MntH
437	 54.26	+2	492209..492466	-	85	16077504	ydaS	BSU04370	-	hypothetical protein
438	 46.80	0	492544..492996	-	150	16077505	ydaT	BSU04380	-	hypothetical protein
439	 46.76	0	493114..493932	+	272	16077506	ydbA	BSU04390	-	hypothetical protein
440	 42.20	0	494061..494432	+	123	16077507	gsiB	BSU04400	-	general stress protein
441	 48.25	+1	494564..494905	+	113	16077508	ydbB	BSU04410	-	hypothetical protein
442	 45.28	0	494899..495258	+	119	16077509	ydbC	BSU04420	-	hypothetical protein
443	 49.15	+1	495295..496116	-	273	16077510	ydbD	BSU04430	-	hypothetical protein
444	 43.78	0	496207..497259	-	350	16077511	dctB	BSU04440	-	C4-dicarboxylate binding protein
445	 46.58	0	497329..498936	+	535	16077512	dctS	BSU04450	-	two-component sensor histidine kinase
446	 46.70	0	498926..499606	+	226	16077513	dctR	BSU04460	-	two-component response regulator
447	 45.97	0	499727..500992	+	421	16077514	dctP	BSU04470	-	C4-dicarboxylate transporter DctA
448	 43.78	0	501140..502192	+	350	16077515	ydbI	BSU04480	-	hypothetical protein
449	 47.03	0	502469..503395	+	308	16077516	ydbJ	BSU04490	-	hypothetical protein
450	 41.97	0	503415..504155	+	246	16077517	ydbK	BSU04500	-	hypothetical protein
451	 43.15	0	504250..504585	+	111	16077518	ydbL	BSU04510	-	hypothetical protein
452	 50.26	+1	504713..505858	+	381	16077519	ydbM	BSU04520	-	hypothetical protein
453	 43.33	0	505883..506062	-	59	16077520	ydbN	BSU04530	-	hypothetical protein
454	 45.70	0	506427..507299	+	290	16077521	ydbO	BSU04540	-	hypothetical protein
455	 38.63	-1	507314..507634	-	106	16077522	ydbP	BSU04550	-	hypothetical protein
456	 46.85	0	507809..508873	+	354	16077523	ddl	BSU04560	-	D-alanyl-alanine synthetase A
457	 47.02	0	508945..510318	+	457	16077524	murF	BSU04570	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase
458	 45.44	0	510667..512202	+	511	16077525	ydbR	BSU04580	-	hypothetical protein
459	 47.08	0	512375..512854	+	159	16077526	ydbS	BSU04590	-	hypothetical protein
460	 44.13	0	512844..514325	+	493	16077527	ydbT	BSU04600	-	hypothetical protein
461	 45.50	0	514577..515176	-	199	16077528	ydcA	BSU04610	-	hypothetical protein
462	 48.63	+1	515271..515636	+	121	16077529	acpS	BSU04620	-	4'-phosphopantetheinyl transferase
463	 41.71	0	515697..516818	+	373	16077530	ydcC	BSU04630	-	hypothetical protein
464	 47.86	0	516933..518102	+	389	16077531	alr	BSU04640	-	D-alanine racemase
465	 47.52	0	518218..518499	+	93	16077532	ydcD	BSU04650	-	hypothetical protein
466	 42.45	0	518504..518854	+	116	16077533	ydcE	BSU04660	-	hypothetical protein
467	 43.27	0	518969..519793	+	274	16077534	rsbR	BSU04670	-	positive regulation of sigma-B activity in response to salt and heat stress
468	 44.26	0	519798..520163	+	121	16077535	rsbS	BSU04680	-	antagonist of RsbT
469	 48.01	+1	520167..520568	+	133	16077536	rsbT	BSU04690	-	switch protein/serine-threonine kinase
470	 42.56	0	520580..521587	+	335	16077537	rsbU	BSU04700	-	serine phosphatase
471	 41.21	0	521649..521978	+	109	16077538	rsbV	BSU04710	-	anti-anti-sigma factor (antagonist of RsbW)
472	 44.31	0	521975..522457	+	160	16077539	rsbW	BSU04720	-	serine-protein kinase RsbW
473	 45.28	0	522417..523211	+	264	16077540	sigB	BSU04730	-	RNA polymerase sigma factor SigB
474	 41.83	0	523211..523810	+	199	16077541	rsbX	BSU04740	-	serine phosphatase
475	 42.18	0	524053..524346	+	97	16077542	ydcF	BSU04750	-	hypothetical protein
476	 41.04	0	524343..524783	+	146	16077543	ydcG	BSU04760	-	hypothetical protein
477	 44.37	0	524767..525210	+	147	16077544	ydcH	BSU04770	-	hypothetical protein
478	 45.74	0	525304..527463	+	719	50812188	ydcI	BSU04780	-	hypothetical protein
479	 41.94	0	527690..528142	+	150	16077546	ydcK	BSU04790	-	hypothetical protein
480	 31.26	-2	529066..530172	-	368	16077547	ydcL	BSU04800	-	hypothetical protein
481	 31.57	-2	530185..530694	-	169	16077548	ydcM	BSU04810	-	hypothetical protein
482	 33.33	-2	530691..531074	-	127	16077549	ydcN	BSU04820	-	hypothetical protein
483	 34.87	-1	531348..531542	+	64	16077550	sacV	BSU04830	-	transcriptional regulator
484	 33.72	-2	531853..532113	+	86	16077551	ydcO	BSU04840	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.