IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4006	 46.92	0	4114735..4116081	+	448	16081059	gntP	BSU40070	-	gluconate permease
4007	 47.62	0	4116104..4117510	+	468	16081060	gntZ	BSU40080	-	6-phosphogluconate dehydrogenase
4008	 43.09	0	4117974..4118537	+	187	16081061	ahpC	BSU40090	-	alkyl hydroperoxide reductase
4009	 47.91	0	4118551..4120080	+	509	16081062	ahpF	BSU40100	-	alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase
4010	 45.28	0	4120190..4121629	-	479	16081063	bglA	BSU40110	-	6-phospho-beta-glucosidase
4011	 45.45	0	4121643..4121873	-	76	16081064	yyzE	BSU40120	-	hypothetical protein
4012	 43.88	0	4122217..4122927	+	236	16081065	yydK	BSU40130	-	hypothetical protein
4013	 29.60	-2	4123244..4123966	-	240	16081066	yydJ	BSU40140	-	hypothetical protein
4014	 29.84	-2	4123987..4124616	-	209	16081067	yydI	BSU40150	-	hypothetical protein
4015	 27.01	-2	4124766..4125524	-	252	16081068	yydH	BSU40160	-	hypothetical protein
4016	 30.42	-2	4125505..4126464	-	319	16081069	yydG	BSU40170	-	hypothetical protein
4017	 30.00	-2	4126522..4126671	-	49	16081070	yydF	BSU40180	-	hypothetical protein
4018	 44.49	0	4127053..4129068	+	671	16081071	fbp	BSU40190	-	fructose-1,6-bisphosphatase
4019	 26.41	-2	4129602..4131362	-	586	16081072	yydD	BSU40200	-	hypothetical protein
4020	 25.81	-2	4131362..4131760	-	132	16081073	yydC	BSU40210	-	hypothetical protein
4021	 28.77	-2	4131753..4133198	-	481	16081074	yydB	BSU40220	-	hypothetical protein
4022	 45.21	0	4133460..4133939	-	159	16081075	yydA	BSU40230	-	SPOUT methyltransferase superfamily protein
4023	 41.30	0	4134376..4134789	+	137	16081076	yycS	BSU40240	-	hypothetical protein
4024	 53.46	+2	4134823..4136049	-	408	16081077	yycR	BSU40250	-	hypothetical protein
4025	 39.36	0	4136387..4136635	-	82	16081078	yycQ	BSU40260	-	hypothetical protein
4026	 47.34	0	4136651..4137814	-	387	16081079	yycP	BSU40270	-	hypothetical protein
4027	 49.73	+1	4137825..4138562	-	245	16081080	yycO	BSU40280	-	hypothetical protein
4028	 47.35	0	4138704..4139174	-	156	16081081	yycN	BSU40290	-	hypothetical protein
4029	 41.80	0	4139285..4140382	+	365	16081082	rapG	BSU40300	-	response regulator aspartate phosphatase
4030	 43.59	0	4140383..4140499	+	38	16081083	phrG	BSU40310	-	regulator of the activity of phosphatase RapG
4031	 49.83	+1	4140735..4141625	-	296	16081084	rocF	BSU40320	-	arginase
4032	 47.72	0	4141699..4143102	-	467	16081085	rocE	BSU40330	-	amino acid permease
4033	 49.09	+1	4143325..4144530	-	401	16081086	rocD	BSU40340	-	ornithine--oxo-acid transaminase
4034	 47.04	0	4144771..4146156	+	461	16081087	rocR	BSU40350	-	NifA/NtrC family transcriptional regulator
4035	 48.21	+1	4146591..4147793	-	400	16081088	yyxA	BSU40360	-	hypothetical protein
4036	 47.83	0	4147862..4148668	-	268	16081089	yycJ	BSU40370	-	hypothetical protein
4037	 39.74	0	4148690..4149532	-	280	16081090	yycI	BSU40380	-	hypothetical protein
4038	 41.96	0	4149519..4150886	-	455	16081091	yycH	BSU40390	-	hypothetical protein
4039	 43.57	0	4150876..4152711	-	611	16081092	yycG	BSU40400	-	hypothetical protein
4040	 45.06	0	4152719..4153426	-	235	16081093	yycF	BSU40410	-	hypothetical protein
4041	 47.18	0	4154457..4155749	-	430	16081094	purA	BSU40420	-	adenylosuccinate synthetase
4042	 48.33	+1	4155955..4156374	-	139	16081095	yycE	BSU40430	-	hypothetical protein
4043	 48.28	+1	4156495..4157859	-	454	16081096	dnaC	BSU40440	-	replicative DNA helicase
4044	 40.30	0	4158029..4158229	+	66	16081097	yycD	BSU40450	-	hypothetical protein
4045	 40.69	0	4158277..4158480	-	67	16081098	yyzB	BSU40460	-	hypothetical protein
4046	 43.97	0	4158601..4158741	+	46	16081099	yycC	BSU40470	-	hypothetical protein
4047	 49.71	+1	4158814..4160022	+	402	16081100	yycB	BSU40480	-	hypothetical protein
4048	 49.27	+1	4160127..4162184	+	685	16081101	yycA	BSU40490	-	hypothetical protein
4049	 42.22	0	4162221..4162670	-	149	16081102	rplI	BSU40500	-	50S ribosomal protein L9
4050	 44.80	0	4162667..4164646	-	659	16081103	yybT	BSU40510	-	hypothetical protein
4051	 40.54	0	4164683..4165612	-	309	16081104	yybS	BSU40520	-	hypothetical protein
4052	 43.27	0	4166134..4166616	+	160	16081105	cotF	BSU40530	-	spore coat protein
4053	 45.24	0	4166646..4167023	-	125	16081106	yybR	BSU40540	-	hypothetical protein
4054	 42.90	0	4167228..4168157	+	309	16081107	ppaC	BSU40550	-	putative manganese-dependent inorganic pyrophosphatase
4055	 47.20	0	4168190..4168636	-	148	16081108	yybP	BSU40560	-	hypothetical protein
4056	 46.25	0	4169069..4170376	+	435	16081109	yybO	BSU40570	-	hypothetical protein
4057	 34.93	-1	4172138..4172575	+	145	16081110	yybN	BSU40580	-	hypothetical protein
4058	 28.04	-2	4172689..4173444	+	251	16081111	yybM	BSU40590	-	hypothetical protein
4059	 26.02	-2	4173434..4174144	+	236	16081112	yybL	BSU40600	-	hypothetical protein
4060	 26.85	-2	4174141..4174896	+	251	16081113	yybK	BSU40610	-	hypothetical protein
4061	 29.38	-2	4174893..4175549	+	218	16081114	yybJ	BSU40620	-	hypothetical protein
4062	 43.73	0	4175924..4176712	-	262	16081115	yybI	BSU40630	-	hypothetical protein
4063	 41.03	0	4176780..4177169	-	129	16081116	yybH	BSU40640	-	hypothetical protein
4064	 48.69	+1	4177315..4178154	+	279	16081117	yybG	BSU40650	-	hypothetical protein
4065	 45.84	0	4178187..4179401	-	404	16081118	yybF	BSU40660	-	hypothetical protein
4066	 46.95	0	4179630..4180466	+	278	16081119	yybE	BSU40670	-	hypothetical protein
4067	 45.95	0	4180480..4180923	+	147	16081120	yybD	BSU40680	-	hypothetical protein
4068	 42.29	0	4181006..4181485	+	159	16081121	yybC	BSU40690	-	hypothetical protein
4069	 41.18	0	4181660..4182322	-	220	16081122	yybB	BSU40700	-	hypothetical protein
4070	 39.96	0	4182469..4182921	-	150	16081123	yybA	BSU40710	-	hypothetical protein
4071	 42.51	0	4183041..4183487	+	148	16081124	yyaT	BSU40720	-	hypothetical protein
4072	 38.12	-1	4183484..4184089	+	201	16081125	yyaS	BSU40730	-	hypothetical protein
4073	 34.10	-1	4184184..4184705	-	173	16081126	yyaR	BSU40740	-	hypothetical protein
4074	 36.69	-1	4185116..4185472	+	118	16081127	yyaQ	BSU40750	-	hypothetical protein
4075	 30.69	-2	4185632..4186198	+	188	16081128	yyaP	BSU40760	-	hypothetical protein
4076	 39.94	0	4186705..4188081	-	458	16081129	tetB	BSU40770	-	multifunctional tetracycline-metal/H+ antiporter and Na+(K+)/H+ antiporter
4077	 34.92	-1	4188115..4188177	-	20	16081130	tetL	BSU40780	-	tetracycline resistance leader peptide
4078	 42.92	0	4188430..4188669	+	79	16081131	yyaO	BSU40790	-	hypothetical protein
4079	 33.33	-2	4188820..4189236	+	138	16081132	yyaN	BSU40800	-	hypothetical protein
4080	 36.38	-1	4189233..4190150	+	305	16081133	yyaM	BSU40810	-	hypothetical protein
4081	 47.34	0	4190222..4192291	+	689	16081134	yyaL	BSU40820	-	hypothetical protein
4082	 40.78	0	4192288..4193187	-	299	16081135	yyaK	BSU40830	-	hypothetical protein
4083	 45.43	0	4193413..4194768	+	451	16081136	yyaJ	BSU40840	-	hypothetical protein
4084	 45.95	0	4194802..4195356	-	184	16081137	maa	BSU40850	-	maltose O-acetyltransferase
4085	 41.99	0	4195374..4195754	-	126	16081138	yyaH	BSU40860	-	hypothetical protein
4086	 43.38	0	4195810..4196745	-	311	16081139	ccpB	BSU40870	-	LacI family transcriptional regulator
4087	 42.82	0	4196804..4197562	-	252	16081140	exoA	BSU40880	-	multifunctional DNA-repair enzyme
4088	 44.58	0	4197627..4197866	-	79	50812313	rpsR	BSU40890	-	30S ribosomal protein S18
4089	 46.82	0	4197910..4198428	-	172	16081142	ssb	BSU40900	-	single-strand DNA-binding protein
4090	 42.01	0	4198469..4198756	-	95	16081143	rpsF	BSU40910	-	30S ribosomal protein S6
4091	 45.69	0	4198867..4199967	-	366	16081144	yyaF	BSU40920	-	translation-associated GTPase
4092	 45.96	0	4200094..4202097	-	667	16081145	yyaE	BSU40930	-	hypothetical protein
4093	 43.56	0	4202448..4203464	-	338	16081146	yyaD	BSU40940	-	hypothetical protein
4094	 44.01	0	4203924..4204541	+	205	16081147	yyaC	BSU40950	-	hypothetical protein
4095	 40.75	0	4204580..4205428	-	282	16081148	spo0J	BSU40960	-	site-specific DNA-binding protein
4096	 42.78	0	4205421..4206182	-	253	16081149	soj	BSU40970	-	chromosome partitioning protein; transcriptional regulator
4097	 36.51	-1	4206430..4206870	+	146	16081150	yyaB	BSU40980	-	hypothetical protein
4098	 45.19	0	4206921..4207772	-	283	16081151	yyaA	BSU40990	-	hypothetical protein
4099	 40.69	0	4207894..4208613	-	239	16081152	gidB	BSU41000	-	glucose-inhibited division protein B
4100	 46.16	0	4208627..4210513	-	628	16081153	gidA	BSU41010	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
4101	 45.80	0	4210534..4211913	-	459	16081154	trmE	BSU41020	-	tRNA modification GTPase TrmE
4102	 41.95	0	4212224..4212850	-	208	16081155	jag	BSU41030	-	SpoIIIJ-associated protein
4103	 40.59	0	4212847..4213632	-	261	16081156	spoIIIJ	BSU41040	-	OxaA-like protein precursor
4104	 39.32	0	4213777..4214127	-	116	16081157	rnpA	BSU41050	-	ribonuclease P
4105	 43.70	0	4214279..4214413	-	44	16081158	rpmH	BSU41060	-	50S ribosomal protein L34
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.