IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3973	 47.75	0	4080048..4081025	-	325	16081025	iolC	BSU39740	-	inositol utilization protein C
3974	 45.34	0	4081049..4081864	-	271	16081026	iolB	BSU39750	-	inositol utilization protein B
3975	 47.68	0	4081939..4083402	-	487	16081027	mmsA	BSU39760	-	methylmalonate-semialdehyde dehydrogenase
3976	 41.93	0	4083818..4084573	+	251	16081028	iolR	BSU39770	-	DeoR family transcriptional regulator
3977	 42.55	0	4084627..4085559	+	310	16081029	iolS	BSU39780	-	inositol utilization protein S
3978	 43.16	0	4085821..4086471	+	216	16081030	yxcE	BSU39790	-	hypothetical protein
3979	 38.83	0	4086475..4086783	+	102	16081031	yxcD	BSU39800	-	hypothetical protein
3980	 50.36	+1	4087022..4088407	+	461	16081032	csbC	BSU39810	-	sugar transporter
3981	 44.23	0	4088449..4090329	-	626	16081033	htpG	BSU39820	-	heat shock protein 90
3982	 41.67	0	4090497..4090748	-	83	16081034	yxcA	BSU39830	-	hypothetical protein
3983	 50.73	+1	4090865..4091686	+	273	50812308	yxbG	BSU39840	-	short chain dehydrogenase
3984	 45.93	0	4091715..4092857	-	380	16081036	yxbF	BSU39850	-	hypothetical protein
3985	 48.06	+1	4093000..4094337	+	445	16081037	aldX	BSU39860	-	aldehyde dehydrogenase
3986	 38.96	0	4094376..4094855	-	159	16081038	yxbD	BSU39870	-	hypothetical protein
3987	 41.19	0	4094935..4095927	-	330	16081039	yxbC	BSU39880	-	hypothetical protein
3988	 40.82	0	4096436..4097170	+	244	16081040	yxbB	BSU39890	-	hypothetical protein
3989	 34.44	-1	4097170..4097439	+	89	16081041	yxbA	BSU39900	-	hypothetical protein
3990	 35.20	-1	4097443..4097925	+	160	16081042	yxnB	BSU39910	-	hypothetical protein
3991	 40.37	0	4097946..4100189	+	747	16081043	asnH	BSU39920	-	asparagine synthetase (glutamine-hydrolyzing)
3992	 37.33	-1	4100186..4101385	+	399	16081044	yxaM	BSU39930	-	hypothetical protein
3993	 48.42	+1	4101449..4102681	-	410	50812309	yxaL	BSU39940	-	hypothetical protein
3994	 46.85	0	4102782..4103210	-	142	16081047	yxaJ	BSU39950	-	hypothetical protein
3995	 38.82	0	4103467..4103922	+	151	16081048	yxaI	BSU39960	-	hypothetical protein
3996	 43.18	0	4103952..4105160	-	402	16081049	yxaH	BSU39970	-	hypothetical protein
3997	 46.94	0	4105268..4106281	-	337	16081050	yxaG	BSU39980	-	hypothetical protein
3998	 43.40	0	4106375..4106950	-	191	16081051	yxaF	BSU39990	-	hypothetical protein
3999	 52.94	+2	4107081..4108151	+	356	50812310	yxnA	BSU40000	-	short chain dehydrogenase
4000	 41.20	0	4108208..4108639	-	143	16081053	yxaD	BSU40010	-	hypothetical protein
4001	 47.00	0	4108866..4109933	+	355	50812311	yxaC	BSU40020	-	hypothetical protein
4002	 41.76	0	4109973..4111004	-	343	50812312	yxaB	BSU40030	-	hypothetical protein
4003	 52.48	+1	4111097..4112245	-	382	16081056	yxaA	BSU40040	-	hypothetical protein
4004	 40.98	0	4112441..4113172	+	243	16081057	gntR	BSU40050	-	GntR family transcriptional regulator
4005	 48.64	+1	4113165..4114706	+	513	16081058	gntK	BSU40060	-	gluconate kinase
4006	 46.92	0	4114735..4116081	+	448	16081059	gntP	BSU40070	-	gluconate permease
4007	 47.62	0	4116104..4117510	+	468	16081060	gntZ	BSU40080	-	6-phosphogluconate dehydrogenase
4008	 43.09	0	4117974..4118537	+	187	16081061	ahpC	BSU40090	-	alkyl hydroperoxide reductase
4009	 47.91	0	4118551..4120080	+	509	16081062	ahpF	BSU40100	-	alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase
4010	 45.28	0	4120190..4121629	-	479	16081063	bglA	BSU40110	-	6-phospho-beta-glucosidase
4011	 45.45	0	4121643..4121873	-	76	16081064	yyzE	BSU40120	-	hypothetical protein
4012	 43.88	0	4122217..4122927	+	236	16081065	yydK	BSU40130	-	hypothetical protein
4013	 29.60	-2	4123244..4123966	-	240	16081066	yydJ	BSU40140	-	hypothetical protein
4014	 29.84	-2	4123987..4124616	-	209	16081067	yydI	BSU40150	-	hypothetical protein
4015	 27.01	-2	4124766..4125524	-	252	16081068	yydH	BSU40160	-	hypothetical protein
4016	 30.42	-2	4125505..4126464	-	319	16081069	yydG	BSU40170	-	hypothetical protein
4017	 30.00	-2	4126522..4126671	-	49	16081070	yydF	BSU40180	-	hypothetical protein
4018	 44.49	0	4127053..4129068	+	671	16081071	fbp	BSU40190	-	fructose-1,6-bisphosphatase
4019	 26.41	-2	4129602..4131362	-	586	16081072	yydD	BSU40200	-	hypothetical protein
4020	 25.81	-2	4131362..4131760	-	132	16081073	yydC	BSU40210	-	hypothetical protein
4021	 28.77	-2	4131753..4133198	-	481	16081074	yydB	BSU40220	-	hypothetical protein
4022	 45.21	0	4133460..4133939	-	159	16081075	yydA	BSU40230	-	SPOUT methyltransferase superfamily protein
4023	 41.30	0	4134376..4134789	+	137	16081076	yycS	BSU40240	-	hypothetical protein
4024	 53.46	+2	4134823..4136049	-	408	16081077	yycR	BSU40250	-	hypothetical protein
4025	 39.36	0	4136387..4136635	-	82	16081078	yycQ	BSU40260	-	hypothetical protein
4026	 47.34	0	4136651..4137814	-	387	16081079	yycP	BSU40270	-	hypothetical protein
4027	 49.73	+1	4137825..4138562	-	245	16081080	yycO	BSU40280	-	hypothetical protein
4028	 47.35	0	4138704..4139174	-	156	16081081	yycN	BSU40290	-	hypothetical protein
4029	 41.80	0	4139285..4140382	+	365	16081082	rapG	BSU40300	-	response regulator aspartate phosphatase
4030	 43.59	0	4140383..4140499	+	38	16081083	phrG	BSU40310	-	regulator of the activity of phosphatase RapG
4031	 49.83	+1	4140735..4141625	-	296	16081084	rocF	BSU40320	-	arginase
4032	 47.72	0	4141699..4143102	-	467	16081085	rocE	BSU40330	-	amino acid permease
4033	 49.09	+1	4143325..4144530	-	401	16081086	rocD	BSU40340	-	ornithine--oxo-acid transaminase
4034	 47.04	0	4144771..4146156	+	461	16081087	rocR	BSU40350	-	NifA/NtrC family transcriptional regulator
4035	 48.21	+1	4146591..4147793	-	400	16081088	yyxA	BSU40360	-	hypothetical protein
4036	 47.83	0	4147862..4148668	-	268	16081089	yycJ	BSU40370	-	hypothetical protein
4037	 39.74	0	4148690..4149532	-	280	16081090	yycI	BSU40380	-	hypothetical protein
4038	 41.96	0	4149519..4150886	-	455	16081091	yycH	BSU40390	-	hypothetical protein
4039	 43.57	0	4150876..4152711	-	611	16081092	yycG	BSU40400	-	hypothetical protein
4040	 45.06	0	4152719..4153426	-	235	16081093	yycF	BSU40410	-	hypothetical protein
4041	 47.18	0	4154457..4155749	-	430	16081094	purA	BSU40420	-	adenylosuccinate synthetase
4042	 48.33	+1	4155955..4156374	-	139	16081095	yycE	BSU40430	-	hypothetical protein
4043	 48.28	+1	4156495..4157859	-	454	16081096	dnaC	BSU40440	-	replicative DNA helicase
4044	 40.30	0	4158029..4158229	+	66	16081097	yycD	BSU40450	-	hypothetical protein
4045	 40.69	0	4158277..4158480	-	67	16081098	yyzB	BSU40460	-	hypothetical protein
4046	 43.97	0	4158601..4158741	+	46	16081099	yycC	BSU40470	-	hypothetical protein
4047	 49.71	+1	4158814..4160022	+	402	16081100	yycB	BSU40480	-	hypothetical protein
4048	 49.27	+1	4160127..4162184	+	685	16081101	yycA	BSU40490	-	hypothetical protein
4049	 42.22	0	4162221..4162670	-	149	16081102	rplI	BSU40500	-	50S ribosomal protein L9
4050	 44.80	0	4162667..4164646	-	659	16081103	yybT	BSU40510	-	hypothetical protein
4051	 40.54	0	4164683..4165612	-	309	16081104	yybS	BSU40520	-	hypothetical protein
4052	 43.27	0	4166134..4166616	+	160	16081105	cotF	BSU40530	-	spore coat protein
4053	 45.24	0	4166646..4167023	-	125	16081106	yybR	BSU40540	-	hypothetical protein
4054	 42.90	0	4167228..4168157	+	309	16081107	ppaC	BSU40550	-	putative manganese-dependent inorganic pyrophosphatase
4055	 47.20	0	4168190..4168636	-	148	16081108	yybP	BSU40560	-	hypothetical protein
4056	 46.25	0	4169069..4170376	+	435	16081109	yybO	BSU40570	-	hypothetical protein
4057	 34.93	-1	4172138..4172575	+	145	16081110	yybN	BSU40580	-	hypothetical protein
4058	 28.04	-2	4172689..4173444	+	251	16081111	yybM	BSU40590	-	hypothetical protein
4059	 26.02	-2	4173434..4174144	+	236	16081112	yybL	BSU40600	-	hypothetical protein
4060	 26.85	-2	4174141..4174896	+	251	16081113	yybK	BSU40610	-	hypothetical protein
4061	 29.38	-2	4174893..4175549	+	218	16081114	yybJ	BSU40620	-	hypothetical protein
4062	 43.73	0	4175924..4176712	-	262	16081115	yybI	BSU40630	-	hypothetical protein
4063	 41.03	0	4176780..4177169	-	129	16081116	yybH	BSU40640	-	hypothetical protein
4064	 48.69	+1	4177315..4178154	+	279	16081117	yybG	BSU40650	-	hypothetical protein
4065	 45.84	0	4178187..4179401	-	404	16081118	yybF	BSU40660	-	hypothetical protein
4066	 46.95	0	4179630..4180466	+	278	16081119	yybE	BSU40670	-	hypothetical protein
4067	 45.95	0	4180480..4180923	+	147	16081120	yybD	BSU40680	-	hypothetical protein
4068	 42.29	0	4181006..4181485	+	159	16081121	yybC	BSU40690	-	hypothetical protein
4069	 41.18	0	4181660..4182322	-	220	16081122	yybB	BSU40700	-	hypothetical protein
4070	 39.96	0	4182469..4182921	-	150	16081123	yybA	BSU40710	-	hypothetical protein
4071	 42.51	0	4183041..4183487	+	148	16081124	yyaT	BSU40720	-	hypothetical protein
4072	 38.12	-1	4183484..4184089	+	201	16081125	yyaS	BSU40730	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.