IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3916	 43.27	0	4019473..4019925	-	150	16080968	yxzG	BSU39170	-	hypothetical protein
3917	 39.70	0	4019995..4020324	-	109	16080969	yxiH	BSU39180	-	hypothetical protein
3918	 32.85	-2	4020447..4020863	-	138	16080970	yxiG	BSU39190	-	hypothetical protein
3919	 33.60	-2	4020914..4021282	-	122	16080971	yxzC	BSU39200	-	hypothetical protein
3920	 41.19	0	4021276..4021746	-	156	16080972	yxiF	BSU39210	-	hypothetical protein
3921	 29.37	-2	4022072..4022500	-	142	16080973	yxxG	BSU39220	-	hypothetical protein
3922	 42.77	0	4022562..4029566	-	2334	16080974	wapA	BSU39230	-	cell wall-associated protein precursor (CWBP200, 105, 62)
3923	 45.51	0	4029728..4030663	-	311	16080975	yxxF	BSU39240	-	hypothetical protein
3924	 45.86	0	4030815..4031261	-	148	16080976	yxiE	BSU39250	-	hypothetical protein
3925	 45.96	0	4031364..4032773	-	469	50812306	bglH	BSU39260	-	beta-glucosidase
3926	 50.33	+1	4032796..4034625	-	609	16080978	bglP	BSU39270	-	phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component
3927	 32.04	-2	4035008..4035316	-	102	16080979	yxxE	BSU39280	-	hypothetical protein
3928	 25.45	-2	4035362..4035805	-	147	16080980	yxxD	BSU39290	-	hypothetical protein
3929	 39.12	0	4035802..4037511	-	569	16080981	yxiD	BSU39300	-	hypothetical protein
3930	 43.70	0	4037531..4037800	-	89	16080982	yxiC	BSU39310	-	hypothetical protein
3931	 41.80	0	4037812..4038177	-	121	16080983	yxiB	BSU39320	-	hypothetical protein
3932	 48.51	+1	4038484..4039893	-	469	16080984	yxiA	BSU39330	-	hypothetical protein
3933	 50.88	+1	4040501..4040956	+	151	16080985	hutP	BSU39340	-	anti-terminator HutP
3934	 49.51	+1	4041069..4042595	+	508	16080986	hutH	BSU39350	-	histidine ammonia-lyase
3935	 52.26	+1	4042592..4044250	+	552	16080987	hutU	BSU39360	-	urocanate hydratase
3936	 48.26	+1	4044263..4045528	+	421	16080988	hutI	BSU39370	-	imidazolonepropionase
3937	 47.29	0	4045521..4046480	+	319	16080989	hutG	BSU39380	-	formimidoylglutamase
3938	 44.68	0	4046556..4047983	+	475	16080990	hutM	BSU39390	-	histidine permease
3939	 50.46	+1	4048027..4049328	-	433	50812307	pdp	BSU39400	-	pyrimidine-nucleoside phosphorylase
3940	 43.15	0	4049358..4050539	-	393	16080992	nupC	BSU39410	-	pyrimidine-nucleoside transport protein
3941	 46.70	0	4050655..4051290	-	211	16080993	dra	BSU39420	-	deoxyribose-phosphate aldolase
3942	 48.83	+1	4051396..4052337	-	313	16080994	deoR	BSU39430	-	transcriptional regulator
3943	 50.00	+1	4052428..4053297	-	289	16080995	yxxB	BSU39440	-	hypothetical protein
3944	 50.67	+1	4053370..4054482	-	370	16080996	yxeR	BSU39450	-	hypothetical protein
3945	 50.60	+1	4054552..4055889	-	445	16080997	yxeQ	BSU39460	-	hypothetical protein
3946	 50.13	+1	4055886..4057028	-	380	16080998	yxeP	BSU39470	-	hypothetical protein
3947	 47.47	0	4057045..4057794	-	249	16080999	yxeO	BSU39480	-	hypothetical protein
3948	 45.93	0	4057807..4058481	-	224	16081000	yxeN	BSU39490	-	hypothetical protein
3949	 43.90	0	4058504..4059298	-	264	16081001	yxeM	BSU39500	-	hypothetical protein
3950	 48.39	+1	4059323..4059820	-	165	16081002	yxeL	BSU39510	-	hypothetical protein
3951	 47.74	0	4059834..4061159	-	441	16081003	yxeK	BSU39520	-	hypothetical protein
3952	 37.72	-1	4061345..4061572	-	75	16081004	yxeJ	BSU39530	-	hypothetical protein
3953	 43.57	0	4061559..4062545	-	328	16081005	yxeI	BSU39540	-	hypothetical protein
3954	 44.90	0	4062700..4063512	-	270	16081006	yxeH	BSU39550	-	hypothetical protein
3955	 42.83	0	4063552..4064109	-	185	16081007	yxeG	BSU39560	-	hypothetical protein
3956	 47.13	0	4064090..4064524	-	144	16081008	yxeF	BSU39570	-	hypothetical protein
3957	 48.63	+1	4064612..4064977	+	121	16081009	yxeE	BSU39580	-	hypothetical protein
3958	 47.18	0	4065225..4065578	+	117	16081010	yxeD	BSU39590	-	hypothetical protein
3959	 42.11	0	4065622..4066020	-	132	16081011	yxeC	BSU39600	-	hypothetical protein
3960	 43.44	0	4066198..4067157	+	319	16081012	yxeB	BSU39610	-	hypothetical protein
3961	 43.68	0	4067204..4067551	-	115	16081013	yxeA	BSU39620	-	hypothetical protein
3962	 44.19	0	4067565..4069433	-	622	16081014	yxdM	BSU39630	-	hypothetical protein
3963	 47.93	+1	4069408..4070181	-	257	16081015	yxdL	BSU39640	-	hypothetical protein
3964	 46.11	0	4070325..4071302	-	325	16081016	yxdK	BSU39650	-	hypothetical protein
3965	 47.39	0	4071299..4071988	-	229	16081017	yxdJ	BSU39660	-	hypothetical protein
3966	 53.61	+2	4072097..4072969	-	290	16081018	fbaB	BSU39670	-	fructose-1,6-bisphosphate aldolase
3967	 42.65	0	4072990..4073826	-	278	16081019	iolI	BSU39680	-	inositol utilization protein I
3968	 43.79	0	4073912..4074781	-	289	16081020	iolH	BSU39690	-	inositol utilization protein H
3969	 45.31	0	4074801..4075835	-	344	16081021	idh	BSU39700	-	myo-inositol 2-dehydrogenase
3970	 49.02	+1	4075858..4077177	-	439	16081022	iolF	BSU39710	-	inositol transport protein
3971	 48.32	+1	4077192..4078085	-	297	16081023	iolE	BSU39720	-	inositol utilization protein E
3972	 48.77	+1	4078102..4079844	-	580	16081024	iolD	BSU39730	-	inositol utilization protein D
3973	 47.75	0	4080048..4081025	-	325	16081025	iolC	BSU39740	-	inositol utilization protein C
3974	 45.34	0	4081049..4081864	-	271	16081026	iolB	BSU39750	-	inositol utilization protein B
3975	 47.68	0	4081939..4083402	-	487	16081027	mmsA	BSU39760	-	methylmalonate-semialdehyde dehydrogenase
3976	 41.93	0	4083818..4084573	+	251	16081028	iolR	BSU39770	-	DeoR family transcriptional regulator
3977	 42.55	0	4084627..4085559	+	310	16081029	iolS	BSU39780	-	inositol utilization protein S
3978	 43.16	0	4085821..4086471	+	216	16081030	yxcE	BSU39790	-	hypothetical protein
3979	 38.83	0	4086475..4086783	+	102	16081031	yxcD	BSU39800	-	hypothetical protein
3980	 50.36	+1	4087022..4088407	+	461	16081032	csbC	BSU39810	-	sugar transporter
3981	 44.23	0	4088449..4090329	-	626	16081033	htpG	BSU39820	-	heat shock protein 90
3982	 41.67	0	4090497..4090748	-	83	16081034	yxcA	BSU39830	-	hypothetical protein
3983	 50.73	+1	4090865..4091686	+	273	50812308	yxbG	BSU39840	-	short chain dehydrogenase
3984	 45.93	0	4091715..4092857	-	380	16081036	yxbF	BSU39850	-	hypothetical protein
3985	 48.06	+1	4093000..4094337	+	445	16081037	aldX	BSU39860	-	aldehyde dehydrogenase
3986	 38.96	0	4094376..4094855	-	159	16081038	yxbD	BSU39870	-	hypothetical protein
3987	 41.19	0	4094935..4095927	-	330	16081039	yxbC	BSU39880	-	hypothetical protein
3988	 40.82	0	4096436..4097170	+	244	16081040	yxbB	BSU39890	-	hypothetical protein
3989	 34.44	-1	4097170..4097439	+	89	16081041	yxbA	BSU39900	-	hypothetical protein
3990	 35.20	-1	4097443..4097925	+	160	16081042	yxnB	BSU39910	-	hypothetical protein
3991	 40.37	0	4097946..4100189	+	747	16081043	asnH	BSU39920	-	asparagine synthetase (glutamine-hydrolyzing)
3992	 37.33	-1	4100186..4101385	+	399	16081044	yxaM	BSU39930	-	hypothetical protein
3993	 48.42	+1	4101449..4102681	-	410	50812309	yxaL	BSU39940	-	hypothetical protein
3994	 46.85	0	4102782..4103210	-	142	16081047	yxaJ	BSU39950	-	hypothetical protein
3995	 38.82	0	4103467..4103922	+	151	16081048	yxaI	BSU39960	-	hypothetical protein
3996	 43.18	0	4103952..4105160	-	402	16081049	yxaH	BSU39970	-	hypothetical protein
3997	 46.94	0	4105268..4106281	-	337	16081050	yxaG	BSU39980	-	hypothetical protein
3998	 43.40	0	4106375..4106950	-	191	16081051	yxaF	BSU39990	-	hypothetical protein
3999	 52.94	+2	4107081..4108151	+	356	50812310	yxnA	BSU40000	-	short chain dehydrogenase
4000	 41.20	0	4108208..4108639	-	143	16081053	yxaD	BSU40010	-	hypothetical protein
4001	 47.00	0	4108866..4109933	+	355	50812311	yxaC	BSU40020	-	hypothetical protein
4002	 41.76	0	4109973..4111004	-	343	50812312	yxaB	BSU40030	-	hypothetical protein
4003	 52.48	+1	4111097..4112245	-	382	16081056	yxaA	BSU40040	-	hypothetical protein
4004	 40.98	0	4112441..4113172	+	243	16081057	gntR	BSU40050	-	GntR family transcriptional regulator
4005	 48.64	+1	4113165..4114706	+	513	16081058	gntK	BSU40060	-	gluconate kinase
4006	 46.92	0	4114735..4116081	+	448	16081059	gntP	BSU40070	-	gluconate permease
4007	 47.62	0	4116104..4117510	+	468	16081060	gntZ	BSU40080	-	6-phosphogluconate dehydrogenase
4008	 43.09	0	4117974..4118537	+	187	16081061	ahpC	BSU40090	-	alkyl hydroperoxide reductase
4009	 47.91	0	4118551..4120080	+	509	16081062	ahpF	BSU40100	-	alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase
4010	 45.28	0	4120190..4121629	-	479	16081063	bglA	BSU40110	-	6-phospho-beta-glucosidase
4011	 45.45	0	4121643..4121873	-	76	16081064	yyzE	BSU40120	-	hypothetical protein
4012	 43.88	0	4122217..4122927	+	236	16081065	yydK	BSU40130	-	hypothetical protein
4013	 29.60	-2	4123244..4123966	-	240	16081066	yydJ	BSU40140	-	hypothetical protein
4014	 29.84	-2	4123987..4124616	-	209	16081067	yydI	BSU40150	-	hypothetical protein
4015	 27.01	-2	4124766..4125524	-	252	16081068	yydH	BSU40160	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.