IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3863	 48.79	+1	3965765..3966967	+	400	16080915	yxlH	BSU38640	-	hypothetical protein
3864	 51.79	+1	3966960..3967739	-	259	16080916	yxlG	BSU38650	-	hypothetical protein
3865	 47.41	0	3967736..3968623	-	295	16080917	yxlF	BSU38660	-	hypothetical protein
3866	 43.39	0	3968630..3968818	-	62	16080918	yxlE	BSU38670	-	hypothetical protein
3867	 41.55	0	3968815..3969021	-	68	16080919	yxlD	BSU38680	-	hypothetical protein
3868	 40.81	0	3969018..3969338	-	106	16080920	yxlC	BSU38690	-	hypothetical protein
3869	 46.00	0	3969331..3969867	-	178	16080921	sigY	BSU38700	-	RNA polymerase sigma factor SigY
3870	 45.49	0	3970079..3971452	+	457	16080922	yxlA	BSU38710	-	hypothetical protein
3871	 56.44	+2	3971467..3972297	-	276	16080923	yxkO	BSU38720	-	hypothetical protein
3872	 49.42	+1	3972383..3974110	-	575	16080924	cydD	BSU38730	-	cysteine ABC transporter ATP-binding protein
3873	 51.23	+1	3974107..3975810	-	567	16080925	cydC	BSU38740	-	ABC transporter ATP-binding protein
3874	 47.69	0	3975810..3976826	-	338	16080926	cydB	BSU38750	-	cytochrome bd ubiquinol oxidase (subunit II)
3875	 45.06	0	3976810..3978216	-	468	16080927	cydA	BSU38760	-	cytochrome bd ubiquinol oxidase (subunit I)
3876	 47.60	0	3978772..3980124	+	450	16080928	yxkJ	BSU38770	-	hypothetical protein
3877	 46.06	0	3980246..3981934	+	562	16080929	yxkI	BSU38780	-	hypothetical protein
3878	 49.25	+1	3981992..3982192	+	66	16080930	yxzE	BSU38790	-	hypothetical protein
3879	 47.74	0	3982206..3983045	-	279	16080931	yxkH	BSU38800	-	hypothetical protein
3880	 46.72	0	3983152..3984249	-	365	16080932	msmX	BSU38810	-	multiple sugar-binding transport ATP-binding protein
3881	 42.95	0	3984370..3985263	-	297	16080933	yxkF	BSU38820	-	hypothetical protein
3882	 48.97	+1	3985447..3986904	+	485	16080934	aldY	BSU38830	-	aldehyde dehydrogenase
3883	 40.38	0	3986946..3987782	-	278	16080935	yxkD	BSU38840	-	hypothetical protein
3884	 35.51	-1	3988251..3988892	+	213	16080936	yxkC	BSU38850	-	hypothetical protein
3885	 48.24	+1	3988967..3989986	-	339	16080937	galE	BSU38860	-	UDP-glucose 4-epimerase
3886	 44.77	0	3990101..3990607	-	168	16080938	yxkA	BSU38870	-	hypothetical protein
3887	 47.72	0	3990737..3991612	+	291	16080939	yxjO	BSU38880	-	hypothetical protein
3888	 46.20	0	3991690..3992163	+	157	16080940	yxjN	BSU38890	-	hypothetical protein
3889	 47.50	0	3992181..3993401	+	406	16080941	yxjM	BSU38900	-	hypothetical protein
3890	 49.77	+1	3993388..3994044	+	218	16080942	yxjL	BSU38910	-	hypothetical protein
3891	 47.28	0	3994094..3995326	+	410	16080943	pepT	BSU38920	-	peptidase T
3892	 39.77	0	3995848..3996111	+	87	16080944	yxjJ	BSU38930	-	hypothetical protein
3893	 39.67	0	3996240..3996728	+	162	16080945	yxjI	BSU38940	-	hypothetical protein
3894	 49.46	+1	3996983..3998005	+	340	16080946	yxjH	BSU38950	-	hypothetical protein
3895	 47.93	+1	3998368..3999504	+	378	50812304	yxjG	BSU38960	-	hypothetical protein
3896	 50.39	+1	3999557..4000330	-	257	16080948	yxjF	BSU38970	-	3-hydroxybutyrate dehydrogenase
3897	 49.16	+1	4000347..4000997	-	216	16080949	scoB	BSU38980	-	succinyl CoA:3-oxoacid CoA-transferase (subunit B)
3898	 50.63	+1	4000994..4001710	-	238	16080950	scoA	BSU38990	-	succinyl CoA:3-oxoacid CoA-transferase (subunit A)
3899	 49.40	+1	4001734..4003152	-	472	50812305	yxjC	BSU39000	-	hypothetical protein
3900	 47.35	0	4003306..4004154	-	282	16080952	yxjB	BSU39010	-	hypothetical protein
3901	 44.72	0	4004770..4005963	+	397	16080953	yxjA	BSU39020	-	hypothetical protein
3902	 43.62	0	4006434..4006676	-	80	16080954	yxiT	BSU39030	-	hypothetical protein
3903	 46.39	0	4006821..4007111	-	96	16080955	yxiS	BSU39040	-	hypothetical protein
3904	 49.34	+1	4007161..4009221	-	686	16080956	katE	BSU39050	-	catalase 2
3905	 51.21	+1	4009422..4010702	+	426	16080957	citH	BSU39060	-	secondary transporter of divalent metal ions/citrate complexes
3906	 41.70	0	4010860..4011588	-	242	16080958	bglS	BSU39070	-	endo-beta-1,3-1,4 glucanase
3907	 42.45	0	4011884..4012717	-	277	16080959	licT	BSU39080	-	BglG family transcriptional antiterminator
3908	 45.23	0	4012813..4013493	-	226	16080960	yxiP	BSU39090	-	hypothetical protein
3909	 48.10	+1	4013700..4014986	+	428	16080961	yxiO	BSU39100	-	hypothetical protein
3910	 45.83	0	4015005..4016444	-	479	16080962	deaD	BSU39110	-	ATP-dependent RNA helicase
3911	 50.30	+1	4016526..4017674	-	382	16080963	yxiM	BSU39120	-	hypothetical protein
3912	 37.81	-1	4017857..4018057	-	66	16080964	yxiL	BSU39130	-	hypothetical protein
3913	 41.77	0	4018166..4018627	-	153	16080965	yxiK	BSU39140	-	hypothetical protein
3914	 42.09	0	4018643..4018939	-	98	16080966	yxiJ	BSU39150	-	hypothetical protein
3915	 42.74	0	4018967..4019455	-	162	16080967	yxiI	BSU39160	-	hypothetical protein
3916	 43.27	0	4019473..4019925	-	150	16080968	yxzG	BSU39170	-	hypothetical protein
3917	 39.70	0	4019995..4020324	-	109	16080969	yxiH	BSU39180	-	hypothetical protein
3918	 32.85	-2	4020447..4020863	-	138	16080970	yxiG	BSU39190	-	hypothetical protein
3919	 33.60	-2	4020914..4021282	-	122	16080971	yxzC	BSU39200	-	hypothetical protein
3920	 41.19	0	4021276..4021746	-	156	16080972	yxiF	BSU39210	-	hypothetical protein
3921	 29.37	-2	4022072..4022500	-	142	16080973	yxxG	BSU39220	-	hypothetical protein
3922	 42.77	0	4022562..4029566	-	2334	16080974	wapA	BSU39230	-	cell wall-associated protein precursor (CWBP200, 105, 62)
3923	 45.51	0	4029728..4030663	-	311	16080975	yxxF	BSU39240	-	hypothetical protein
3924	 45.86	0	4030815..4031261	-	148	16080976	yxiE	BSU39250	-	hypothetical protein
3925	 45.96	0	4031364..4032773	-	469	50812306	bglH	BSU39260	-	beta-glucosidase
3926	 50.33	+1	4032796..4034625	-	609	16080978	bglP	BSU39270	-	phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component
3927	 32.04	-2	4035008..4035316	-	102	16080979	yxxE	BSU39280	-	hypothetical protein
3928	 25.45	-2	4035362..4035805	-	147	16080980	yxxD	BSU39290	-	hypothetical protein
3929	 39.12	0	4035802..4037511	-	569	16080981	yxiD	BSU39300	-	hypothetical protein
3930	 43.70	0	4037531..4037800	-	89	16080982	yxiC	BSU39310	-	hypothetical protein
3931	 41.80	0	4037812..4038177	-	121	16080983	yxiB	BSU39320	-	hypothetical protein
3932	 48.51	+1	4038484..4039893	-	469	16080984	yxiA	BSU39330	-	hypothetical protein
3933	 50.88	+1	4040501..4040956	+	151	16080985	hutP	BSU39340	-	anti-terminator HutP
3934	 49.51	+1	4041069..4042595	+	508	16080986	hutH	BSU39350	-	histidine ammonia-lyase
3935	 52.26	+1	4042592..4044250	+	552	16080987	hutU	BSU39360	-	urocanate hydratase
3936	 48.26	+1	4044263..4045528	+	421	16080988	hutI	BSU39370	-	imidazolonepropionase
3937	 47.29	0	4045521..4046480	+	319	16080989	hutG	BSU39380	-	formimidoylglutamase
3938	 44.68	0	4046556..4047983	+	475	16080990	hutM	BSU39390	-	histidine permease
3939	 50.46	+1	4048027..4049328	-	433	50812307	pdp	BSU39400	-	pyrimidine-nucleoside phosphorylase
3940	 43.15	0	4049358..4050539	-	393	16080992	nupC	BSU39410	-	pyrimidine-nucleoside transport protein
3941	 46.70	0	4050655..4051290	-	211	16080993	dra	BSU39420	-	deoxyribose-phosphate aldolase
3942	 48.83	+1	4051396..4052337	-	313	16080994	deoR	BSU39430	-	transcriptional regulator
3943	 50.00	+1	4052428..4053297	-	289	16080995	yxxB	BSU39440	-	hypothetical protein
3944	 50.67	+1	4053370..4054482	-	370	16080996	yxeR	BSU39450	-	hypothetical protein
3945	 50.60	+1	4054552..4055889	-	445	16080997	yxeQ	BSU39460	-	hypothetical protein
3946	 50.13	+1	4055886..4057028	-	380	16080998	yxeP	BSU39470	-	hypothetical protein
3947	 47.47	0	4057045..4057794	-	249	16080999	yxeO	BSU39480	-	hypothetical protein
3948	 45.93	0	4057807..4058481	-	224	16081000	yxeN	BSU39490	-	hypothetical protein
3949	 43.90	0	4058504..4059298	-	264	16081001	yxeM	BSU39500	-	hypothetical protein
3950	 48.39	+1	4059323..4059820	-	165	16081002	yxeL	BSU39510	-	hypothetical protein
3951	 47.74	0	4059834..4061159	-	441	16081003	yxeK	BSU39520	-	hypothetical protein
3952	 37.72	-1	4061345..4061572	-	75	16081004	yxeJ	BSU39530	-	hypothetical protein
3953	 43.57	0	4061559..4062545	-	328	16081005	yxeI	BSU39540	-	hypothetical protein
3954	 44.90	0	4062700..4063512	-	270	16081006	yxeH	BSU39550	-	hypothetical protein
3955	 42.83	0	4063552..4064109	-	185	16081007	yxeG	BSU39560	-	hypothetical protein
3956	 47.13	0	4064090..4064524	-	144	16081008	yxeF	BSU39570	-	hypothetical protein
3957	 48.63	+1	4064612..4064977	+	121	16081009	yxeE	BSU39580	-	hypothetical protein
3958	 47.18	0	4065225..4065578	+	117	16081010	yxeD	BSU39590	-	hypothetical protein
3959	 42.11	0	4065622..4066020	-	132	16081011	yxeC	BSU39600	-	hypothetical protein
3960	 43.44	0	4066198..4067157	+	319	16081012	yxeB	BSU39610	-	hypothetical protein
3961	 43.68	0	4067204..4067551	-	115	16081013	yxeA	BSU39620	-	hypothetical protein
3962	 44.19	0	4067565..4069433	-	622	16081014	yxdM	BSU39630	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.