IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3819	 46.12	0	3919661..3920833	-	390	16080871	galK	BSU38200	-	galactokinase
3820	 40.89	0	3920914..3921297	-	127	16080872	ywcD	BSU38210	-	hypothetical protein
3821	 41.22	0	3921315..3921986	-	223	16080873	ywcC	BSU38220	-	hypothetical protein
3822	 41.75	0	3922943..3923251	+	102	16080874	ywcB	BSU38230	-	hypothetical protein
3823	 50.29	+1	3923238..3924788	+	516	16080875	ywcA	BSU38240	-	hypothetical protein
3824	 45.44	0	3924819..3925421	-	200	16080876	ywbO	BSU38250	-	hypothetical protein
3825	 48.60	+1	3925705..3926955	-	416	16080877	ywbN	BSU38260	-	hypothetical protein
3826	 43.18	0	3926974..3928131	-	385	16080878	ywbM	BSU38270	-	hypothetical protein
3827	 47.51	0	3928128..3929573	-	481	16080879	ywbL	BSU38280	-	hypothetical protein
3828	 48.88	+1	3929730..3930398	-	222	16080880	thiE	BSU38290	-	thiamine-phosphate pyrophosphorylase
3829	 52.75	+2	3930395..3931213	-	272	16080881	thiM	BSU38300	-	hydroxyethylthiazole kinase
3830	 45.92	0	3931221..3932126	-	301	16080882	ywbI	BSU38310	-	hypothetical protein
3831	 40.83	0	3932232..3932618	+	128	16080883	ywbH	BSU38320	-	holin-like protein
3832	 49.45	+1	3932600..3933325	+	241	16080884	ywbG	BSU38330	-	hypothetical protein
3833	 45.75	0	3933380..3934579	+	399	16080885	ywbF	BSU38340	-	hypothetical protein
3834	 44.44	0	3934613..3934810	+	65	16080886	ywbE	BSU38350	-	hypothetical protein
3835	 47.27	0	3934845..3936035	-	396	16080887	ywbD	BSU38360	-	hypothetical protein
3836	 45.14	0	3936156..3936536	+	126	16080888	ywbC	BSU38370	-	hypothetical protein
3837	 39.68	0	3936574..3937251	-	225	16080889	ywbB	BSU38380	-	hypothetical protein
3838	 52.36	+1	3937328..3938662	-	444	16080890	ywbA	BSU38390	-	hypothetical protein
3839	 46.44	0	3938890..3940827	+	645	16080891	epr	BSU38400	-	extracellular serine protease
3840	 48.41	+1	3941255..3942634	+	459	16080892	sacX	BSU38410	-	negative regulatory protein of SacY
3841	 39.98	0	3942688..3943530	+	280	16080893	sacY	BSU38420	-	transcriptional antiterminator
3842	 41.70	0	3943581..3944441	-	286	16080894	gspA	BSU38430	-	general stress protein
3843	 45.24	0	3944551..3945264	-	237	16080895	ywaF	BSU38440	-	hypothetical protein
3844	 45.74	0	3945415..3945930	+	171	16080896	ywaE	BSU38450	-	hypothetical protein
3845	 45.33	0	3946179..3947420	+	413	16080897	tyrZ	BSU38460	-	tyrosyl-tRNA synthetase
3846	 47.66	0	3947576..3948943	+	455	16080898	ywaD	BSU38470	-	hypothetical protein
3847	 38.55	-1	3948973..3949605	-	210	16080899	ywaC	BSU38480	-	hypothetical protein
3848	 47.54	0	3949747..3950682	-	311	16080900	menA	BSU38490	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3849	 47.95	+1	3951296..3952807	+	503	16080901	dltA	BSU38500	-	D-alanine--D-alanyl carrier protein ligase
3850	 43.43	0	3952804..3953991	+	395	16080902	dltB	BSU38510	-	D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanyl transfer from Dcp to undecaprenol-phosphate) (lipoteichoic acid biosynthesis)
3851	 36.29	-1	3954008..3954244	+	78	16080903	dltC	BSU38520	-	D-alanine--poly(phosphoribitol) ligase subunit 2
3852	 44.53	0	3954244..3955422	+	392	16080904	dltD	BSU38530	-	D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer from undecaprenol-P to the poly(glycerophosphate) chain of LTA) (lipoteichoic acid biosynthesis)
3853	 48.09	+1	3955513..3956271	+	252	16080905	dltE	BSU38540	-	involved in lipoteichoic acid biosynthesis
3854	 45.79	0	3956412..3957503	+	363	16080906	ywaA	BSU38550	-	branched-chain amino acid aminotransferase
3855	 49.51	+1	3957537..3958865	-	442	16080907	licH	BSU38560	-	6-phospho-beta-glucosidase
3856	 45.35	0	3958862..3959194	-	110	16080908	licA	BSU38570	-	phosphotransferase system (PTS) lichenan-specific enzyme IIA component
3857	 51.66	+1	3959213..3960571	-	452	16080909	licC	BSU38580	-	phosphotransferase system (PTS) lichenan-specific enzyme IIC component
3858	 45.31	0	3960587..3960895	-	102	16080910	licB	BSU38590	-	phosphotransferase system (PTS) lichenan-specific enzyme IIB component
3859	 45.69	0	3961023..3962948	-	641	16080911	licR	BSU38600	-	transcriptional regulator
3860	 43.40	0	3963111..3963269	-	52	16080912	yxzF	BSU38610	-	hypothetical protein
3861	 54.31	+2	3963298..3963888	-	196	16080913	yxlJ	BSU38620	-	3-methyladenine DNA glycosylase
3862	 47.57	0	3964017..3965660	+	547	16080914	katX	BSU38630	-	major catalase in spores
3863	 48.79	+1	3965765..3966967	+	400	16080915	yxlH	BSU38640	-	hypothetical protein
3864	 51.79	+1	3966960..3967739	-	259	16080916	yxlG	BSU38650	-	hypothetical protein
3865	 47.41	0	3967736..3968623	-	295	16080917	yxlF	BSU38660	-	hypothetical protein
3866	 43.39	0	3968630..3968818	-	62	16080918	yxlE	BSU38670	-	hypothetical protein
3867	 41.55	0	3968815..3969021	-	68	16080919	yxlD	BSU38680	-	hypothetical protein
3868	 40.81	0	3969018..3969338	-	106	16080920	yxlC	BSU38690	-	hypothetical protein
3869	 46.00	0	3969331..3969867	-	178	16080921	sigY	BSU38700	-	RNA polymerase sigma factor SigY
3870	 45.49	0	3970079..3971452	+	457	16080922	yxlA	BSU38710	-	hypothetical protein
3871	 56.44	+2	3971467..3972297	-	276	16080923	yxkO	BSU38720	-	hypothetical protein
3872	 49.42	+1	3972383..3974110	-	575	16080924	cydD	BSU38730	-	cysteine ABC transporter ATP-binding protein
3873	 51.23	+1	3974107..3975810	-	567	16080925	cydC	BSU38740	-	ABC transporter ATP-binding protein
3874	 47.69	0	3975810..3976826	-	338	16080926	cydB	BSU38750	-	cytochrome bd ubiquinol oxidase (subunit II)
3875	 45.06	0	3976810..3978216	-	468	16080927	cydA	BSU38760	-	cytochrome bd ubiquinol oxidase (subunit I)
3876	 47.60	0	3978772..3980124	+	450	16080928	yxkJ	BSU38770	-	hypothetical protein
3877	 46.06	0	3980246..3981934	+	562	16080929	yxkI	BSU38780	-	hypothetical protein
3878	 49.25	+1	3981992..3982192	+	66	16080930	yxzE	BSU38790	-	hypothetical protein
3879	 47.74	0	3982206..3983045	-	279	16080931	yxkH	BSU38800	-	hypothetical protein
3880	 46.72	0	3983152..3984249	-	365	16080932	msmX	BSU38810	-	multiple sugar-binding transport ATP-binding protein
3881	 42.95	0	3984370..3985263	-	297	16080933	yxkF	BSU38820	-	hypothetical protein
3882	 48.97	+1	3985447..3986904	+	485	16080934	aldY	BSU38830	-	aldehyde dehydrogenase
3883	 40.38	0	3986946..3987782	-	278	16080935	yxkD	BSU38840	-	hypothetical protein
3884	 35.51	-1	3988251..3988892	+	213	16080936	yxkC	BSU38850	-	hypothetical protein
3885	 48.24	+1	3988967..3989986	-	339	16080937	galE	BSU38860	-	UDP-glucose 4-epimerase
3886	 44.77	0	3990101..3990607	-	168	16080938	yxkA	BSU38870	-	hypothetical protein
3887	 47.72	0	3990737..3991612	+	291	16080939	yxjO	BSU38880	-	hypothetical protein
3888	 46.20	0	3991690..3992163	+	157	16080940	yxjN	BSU38890	-	hypothetical protein
3889	 47.50	0	3992181..3993401	+	406	16080941	yxjM	BSU38900	-	hypothetical protein
3890	 49.77	+1	3993388..3994044	+	218	16080942	yxjL	BSU38910	-	hypothetical protein
3891	 47.28	0	3994094..3995326	+	410	16080943	pepT	BSU38920	-	peptidase T
3892	 39.77	0	3995848..3996111	+	87	16080944	yxjJ	BSU38930	-	hypothetical protein
3893	 39.67	0	3996240..3996728	+	162	16080945	yxjI	BSU38940	-	hypothetical protein
3894	 49.46	+1	3996983..3998005	+	340	16080946	yxjH	BSU38950	-	hypothetical protein
3895	 47.93	+1	3998368..3999504	+	378	50812304	yxjG	BSU38960	-	hypothetical protein
3896	 50.39	+1	3999557..4000330	-	257	16080948	yxjF	BSU38970	-	3-hydroxybutyrate dehydrogenase
3897	 49.16	+1	4000347..4000997	-	216	16080949	scoB	BSU38980	-	succinyl CoA:3-oxoacid CoA-transferase (subunit B)
3898	 50.63	+1	4000994..4001710	-	238	16080950	scoA	BSU38990	-	succinyl CoA:3-oxoacid CoA-transferase (subunit A)
3899	 49.40	+1	4001734..4003152	-	472	50812305	yxjC	BSU39000	-	hypothetical protein
3900	 47.35	0	4003306..4004154	-	282	16080952	yxjB	BSU39010	-	hypothetical protein
3901	 44.72	0	4004770..4005963	+	397	16080953	yxjA	BSU39020	-	hypothetical protein
3902	 43.62	0	4006434..4006676	-	80	16080954	yxiT	BSU39030	-	hypothetical protein
3903	 46.39	0	4006821..4007111	-	96	16080955	yxiS	BSU39040	-	hypothetical protein
3904	 49.34	+1	4007161..4009221	-	686	16080956	katE	BSU39050	-	catalase 2
3905	 51.21	+1	4009422..4010702	+	426	16080957	citH	BSU39060	-	secondary transporter of divalent metal ions/citrate complexes
3906	 41.70	0	4010860..4011588	-	242	16080958	bglS	BSU39070	-	endo-beta-1,3-1,4 glucanase
3907	 42.45	0	4011884..4012717	-	277	16080959	licT	BSU39080	-	BglG family transcriptional antiterminator
3908	 45.23	0	4012813..4013493	-	226	16080960	yxiP	BSU39090	-	hypothetical protein
3909	 48.10	+1	4013700..4014986	+	428	16080961	yxiO	BSU39100	-	hypothetical protein
3910	 45.83	0	4015005..4016444	-	479	16080962	deaD	BSU39110	-	ATP-dependent RNA helicase
3911	 50.30	+1	4016526..4017674	-	382	16080963	yxiM	BSU39120	-	hypothetical protein
3912	 37.81	-1	4017857..4018057	-	66	16080964	yxiL	BSU39130	-	hypothetical protein
3913	 41.77	0	4018166..4018627	-	153	16080965	yxiK	BSU39140	-	hypothetical protein
3914	 42.09	0	4018643..4018939	-	98	16080966	yxiJ	BSU39150	-	hypothetical protein
3915	 42.74	0	4018967..4019455	-	162	16080967	yxiI	BSU39160	-	hypothetical protein
3916	 43.27	0	4019473..4019925	-	150	16080968	yxzG	BSU39170	-	hypothetical protein
3917	 39.70	0	4019995..4020324	-	109	16080969	yxiH	BSU39180	-	hypothetical protein
3918	 32.85	-2	4020447..4020863	-	138	16080970	yxiG	BSU39190	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.