IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3777	 48.19	+1	3877988..3879535	-	515	16080830	rocA	BSU37780	-	1-pyrroline-5-carboxylate dehydrogenase
3778	 49.57	+1	3879762..3881036	-	424	16080831	rocG	BSU37790	-	glutamate dehydrogenase
3779	 42.15	0	3881213..3881677	-	154	16080832	yweA	BSU37800	-	hypothetical protein
3780	 45.83	0	3882001..3882456	-	151	50812301	spsL	BSU37810	-	spore coat polysaccharide synthesis
3781	 49.77	+1	3882449..3883300	-	283	50812302	spsK	BSU37820	-	spore coat polysaccharide synthesis
3782	 49.68	+1	3883314..3884261	-	315	16080834	spsJ	BSU37830	-	spore coat polysaccharide synthesis
3783	 44.40	0	3884261..3885001	-	246	16080835	spsI	BSU37840	-	spore coat polysaccharide synthesis
3784	 46.47	0	3885026..3886045	-	339	16080836	spsG	BSU37850	-	spore coat polysaccharide synthesis
3785	 47.36	0	3886052..3886771	-	239	16080837	spsF	BSU37860	-	spore coat polysaccharide synthesis
3786	 49.29	+1	3886764..3887885	-	373	16080838	spsE	BSU37870	-	spore coat polysaccharide synthesis
3787	 46.32	0	3887885..3888754	-	289	16080839	spsD	BSU37880	-	spore coat polysaccharide synthesis
3788	 48.46	+1	3888755..3889924	-	389	16080840	spsC	BSU37890	-	spore coat polysaccharide synthesis
3789	 44.82	0	3889945..3891363	-	472	16080841	spsB	BSU37900	-	spore coat polysaccharide synthesis
3790	 43.58	0	3891368..3892138	-	256	16080842	spsA	BSU37910	-	spore coat polysaccharide synthesis
3791	 49.63	+1	3892458..3893003	+	181	16080843	ywdL	BSU37920	-	hypothetical protein
3792	 47.66	0	3893076..3893417	-	113	16080844	ywdK	BSU37930	-	hypothetical protein
3793	 47.14	0	3893418..3894800	-	460	16080845	ywdJ	BSU37940	-	hypothetical protein
3794	 47.80	0	3894820..3895137	-	105	16080846	ywdI	BSU37950	-	hypothetical protein
3795	 49.27	+1	3895305..3896678	+	457	16080847	ywdH	BSU37960	-	hypothetical protein
3796	 48.53	+1	3896703..3897380	-	225	16080848	ung	BSU37970	-	uracil-DNA glycosylase
3797	 47.58	0	3897394..3898200	-	268	16080849	ywdF	BSU37980	-	hypothetical protein
3798	 44.94	0	3898291..3898824	-	177	16080850	ywdE	BSU37990	-	hypothetical protein
3799	 41.87	0	3898872..3899363	-	163	16080851	ywdD	BSU38000	-	hypothetical protein
3800	 46.85	0	3899406..3899834	+	142	16080852	ywdC	BSU38010	-	hypothetical protein
3801	 48.16	+1	3899983..3900798	+	271	16080853	thiD	BSU38020	-	pyridoxal kinase
3802	 38.15	-1	3900888..3901136	-	82	16080854	ywdA	BSU38030	-	hypothetical protein
3803	 48.72	+1	3901230..3902672	-	480	16080855	sacA	BSU38040	-	sucrase-6-phosphate hydrolase
3804	 47.04	0	3902669..3904054	-	461	50812303	sacP	BSU38050	-	phosphotransferase system (PTS) sucrose-specific enzyme IIBC component
3805	 45.65	0	3904356..3905126	+	256	16080857	ywcJ	BSU38060	-	hypothetical protein
3806	 43.44	0	3905165..3905995	-	276	16080858	sacT	BSU38070	-	transcriptional antiterminator
3807	 50.83	+1	3906035..3906337	-	100	16080859	ywcI	BSU38080	-	hypothetical protein
3808	 47.87	0	3906867..3909287	+	806	16080860	vpr	BSU38090	-	extracellular serine protease
3809	 48.70	+1	3909325..3910326	-	333	16080861	ywcH	BSU38100	-	hypothetical protein
3810	 43.73	0	3910500..3911249	-	249	16080862	nfrA	BSU38110	-	FMN-containing NADPH-linked nitro/flavin reductase
3811	 37.73	-1	3911355..3912536	-	393	16080863	rodA	BSU38120	-	maintenance of the rod shape and extension of the lateral walls of the cell
3812	 42.42	0	3913032..3913295	+	87	16080864	ywcE	BSU38130	-	hypothetical protein
3813	 48.00	+1	3913338..3913712	-	124	16080865	qoxD	BSU38140	-	cytochrome aa3 quinol oxidase (subunit IV)
3814	 43.41	0	3913714..3914328	-	204	16080866	qoxC	BSU38150	-	cytochrome aa3 quinol oxidase (subunit III)
3815	 43.44	0	3914342..3916291	-	649	16080867	qoxB	BSU38160	-	cytochrome aa3 quinol oxidase (subunit I)
3816	 42.03	0	3916319..3917284	-	321	16080868	qoxA	BSU38170	-	cytochrome aa3 quinol oxidase (subunit II)
3817	 52.00	+1	3917895..3918044	+	49	16080869	ywzA	BSU38180	-	hypothetical protein
3818	 48.64	+1	3918116..3919657	-	513	16080870	galT	BSU38190	-	galactose-1-phosphate uridylyltransferase
3819	 46.12	0	3919661..3920833	-	390	16080871	galK	BSU38200	-	galactokinase
3820	 40.89	0	3920914..3921297	-	127	16080872	ywcD	BSU38210	-	hypothetical protein
3821	 41.22	0	3921315..3921986	-	223	16080873	ywcC	BSU38220	-	hypothetical protein
3822	 41.75	0	3922943..3923251	+	102	16080874	ywcB	BSU38230	-	hypothetical protein
3823	 50.29	+1	3923238..3924788	+	516	16080875	ywcA	BSU38240	-	hypothetical protein
3824	 45.44	0	3924819..3925421	-	200	16080876	ywbO	BSU38250	-	hypothetical protein
3825	 48.60	+1	3925705..3926955	-	416	16080877	ywbN	BSU38260	-	hypothetical protein
3826	 43.18	0	3926974..3928131	-	385	16080878	ywbM	BSU38270	-	hypothetical protein
3827	 47.51	0	3928128..3929573	-	481	16080879	ywbL	BSU38280	-	hypothetical protein
3828	 48.88	+1	3929730..3930398	-	222	16080880	thiE	BSU38290	-	thiamine-phosphate pyrophosphorylase
3829	 52.75	+2	3930395..3931213	-	272	16080881	thiM	BSU38300	-	hydroxyethylthiazole kinase
3830	 45.92	0	3931221..3932126	-	301	16080882	ywbI	BSU38310	-	hypothetical protein
3831	 40.83	0	3932232..3932618	+	128	16080883	ywbH	BSU38320	-	holin-like protein
3832	 49.45	+1	3932600..3933325	+	241	16080884	ywbG	BSU38330	-	hypothetical protein
3833	 45.75	0	3933380..3934579	+	399	16080885	ywbF	BSU38340	-	hypothetical protein
3834	 44.44	0	3934613..3934810	+	65	16080886	ywbE	BSU38350	-	hypothetical protein
3835	 47.27	0	3934845..3936035	-	396	16080887	ywbD	BSU38360	-	hypothetical protein
3836	 45.14	0	3936156..3936536	+	126	16080888	ywbC	BSU38370	-	hypothetical protein
3837	 39.68	0	3936574..3937251	-	225	16080889	ywbB	BSU38380	-	hypothetical protein
3838	 52.36	+1	3937328..3938662	-	444	16080890	ywbA	BSU38390	-	hypothetical protein
3839	 46.44	0	3938890..3940827	+	645	16080891	epr	BSU38400	-	extracellular serine protease
3840	 48.41	+1	3941255..3942634	+	459	16080892	sacX	BSU38410	-	negative regulatory protein of SacY
3841	 39.98	0	3942688..3943530	+	280	16080893	sacY	BSU38420	-	transcriptional antiterminator
3842	 41.70	0	3943581..3944441	-	286	16080894	gspA	BSU38430	-	general stress protein
3843	 45.24	0	3944551..3945264	-	237	16080895	ywaF	BSU38440	-	hypothetical protein
3844	 45.74	0	3945415..3945930	+	171	16080896	ywaE	BSU38450	-	hypothetical protein
3845	 45.33	0	3946179..3947420	+	413	16080897	tyrZ	BSU38460	-	tyrosyl-tRNA synthetase
3846	 47.66	0	3947576..3948943	+	455	16080898	ywaD	BSU38470	-	hypothetical protein
3847	 38.55	-1	3948973..3949605	-	210	16080899	ywaC	BSU38480	-	hypothetical protein
3848	 47.54	0	3949747..3950682	-	311	16080900	menA	BSU38490	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3849	 47.95	+1	3951296..3952807	+	503	16080901	dltA	BSU38500	-	D-alanine--D-alanyl carrier protein ligase
3850	 43.43	0	3952804..3953991	+	395	16080902	dltB	BSU38510	-	D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanyl transfer from Dcp to undecaprenol-phosphate) (lipoteichoic acid biosynthesis)
3851	 36.29	-1	3954008..3954244	+	78	16080903	dltC	BSU38520	-	D-alanine--poly(phosphoribitol) ligase subunit 2
3852	 44.53	0	3954244..3955422	+	392	16080904	dltD	BSU38530	-	D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer from undecaprenol-P to the poly(glycerophosphate) chain of LTA) (lipoteichoic acid biosynthesis)
3853	 48.09	+1	3955513..3956271	+	252	16080905	dltE	BSU38540	-	involved in lipoteichoic acid biosynthesis
3854	 45.79	0	3956412..3957503	+	363	16080906	ywaA	BSU38550	-	branched-chain amino acid aminotransferase
3855	 49.51	+1	3957537..3958865	-	442	16080907	licH	BSU38560	-	6-phospho-beta-glucosidase
3856	 45.35	0	3958862..3959194	-	110	16080908	licA	BSU38570	-	phosphotransferase system (PTS) lichenan-specific enzyme IIA component
3857	 51.66	+1	3959213..3960571	-	452	16080909	licC	BSU38580	-	phosphotransferase system (PTS) lichenan-specific enzyme IIC component
3858	 45.31	0	3960587..3960895	-	102	16080910	licB	BSU38590	-	phosphotransferase system (PTS) lichenan-specific enzyme IIB component
3859	 45.69	0	3961023..3962948	-	641	16080911	licR	BSU38600	-	transcriptional regulator
3860	 43.40	0	3963111..3963269	-	52	16080912	yxzF	BSU38610	-	hypothetical protein
3861	 54.31	+2	3963298..3963888	-	196	16080913	yxlJ	BSU38620	-	3-methyladenine DNA glycosylase
3862	 47.57	0	3964017..3965660	+	547	16080914	katX	BSU38630	-	major catalase in spores
3863	 48.79	+1	3965765..3966967	+	400	16080915	yxlH	BSU38640	-	hypothetical protein
3864	 51.79	+1	3966960..3967739	-	259	16080916	yxlG	BSU38650	-	hypothetical protein
3865	 47.41	0	3967736..3968623	-	295	16080917	yxlF	BSU38660	-	hypothetical protein
3866	 43.39	0	3968630..3968818	-	62	16080918	yxlE	BSU38670	-	hypothetical protein
3867	 41.55	0	3968815..3969021	-	68	16080919	yxlD	BSU38680	-	hypothetical protein
3868	 40.81	0	3969018..3969338	-	106	16080920	yxlC	BSU38690	-	hypothetical protein
3869	 46.00	0	3969331..3969867	-	178	16080921	sigY	BSU38700	-	RNA polymerase sigma factor SigY
3870	 45.49	0	3970079..3971452	+	457	16080922	yxlA	BSU38710	-	hypothetical protein
3871	 56.44	+2	3971467..3972297	-	276	16080923	yxkO	BSU38720	-	hypothetical protein
3872	 49.42	+1	3972383..3974110	-	575	16080924	cydD	BSU38730	-	cysteine ABC transporter ATP-binding protein
3873	 51.23	+1	3974107..3975810	-	567	16080925	cydC	BSU38740	-	ABC transporter ATP-binding protein
3874	 47.69	0	3975810..3976826	-	338	16080926	cydB	BSU38750	-	cytochrome bd ubiquinol oxidase (subunit II)
3875	 45.06	0	3976810..3978216	-	468	16080927	cydA	BSU38760	-	cytochrome bd ubiquinol oxidase (subunit I)
3876	 47.60	0	3978772..3980124	+	450	16080928	yxkJ	BSU38770	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.