IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3711	 43.94	0	3807535..3808392	-	285	16080765	fbaA	BSU37120	-	fructose-bisphosphate aldolase
3712	 45.60	0	3808573..3808947	-	124	16080766	spo0F	BSU37130	-	two-component response regulator
3713	 46.74	0	3809113..3809634	+	173	16080767	ywjG	BSU37140	-	hypothetical protein
3714	 47.01	0	3809716..3811323	-	535	16080768	pyrG	BSU37150	-	CTP synthetase
3715	 40.61	0	3811565..3812086	-	173	16080769	rpoE	BSU37160	-	DNA-directed RNA polymerase subunit delta
3716	 48.95	+1	3812269..3813408	-	379	16080770	acdA	BSU37170	-	acyl-CoA dehydrogenase
3717	 48.87	+1	3813405..3815522	-	705	16080771	ywjF	BSU37180	-	hypothetical protein
3718	 44.19	0	3815677..3816873	+	398	16080772	ywjE	BSU37190	-	hypothetical protein
3719	 46.73	0	3816886..3817848	+	320	16080773	uvsE	BSU37200	-	putative UV damage endonuclease
3720	 37.00	-1	3817929..3818201	+	90	16080774	ywjC	BSU37210	-	hypothetical protein
3721	 43.43	0	3818243..3818767	-	174	16080775	ywjB	BSU37220	-	hypothetical protein
3722	 48.21	+1	3818777..3820504	-	575	16080776	ywjA	BSU37230	-	hypothetical protein
3723	 45.31	0	3820593..3822095	-	500	16080777	ywiE	BSU37240	-	hypothetical protein
3724	 50.15	+1	3822581..3823252	-	223	16080778	narI	BSU37250	-	nitrate reductase (gamma subunit)
3725	 48.83	+1	3823249..3823803	-	184	16080779	narJ	BSU37260	-	nitrate reductase (protein J)
3726	 48.09	+1	3823829..3825292	-	487	16080780	narH	BSU37270	-	nitrate reductase (beta subunit)
3727	 49.96	+1	3825282..3828968	-	1228	16080781	narG	BSU37280	-	nitrate reductase (alpha subunit)
3728	 39.20	0	3829164..3829640	-	158	16080782	arfM	BSU37290	-	transcriptional regulator
3729	 47.78	0	3829784..3830503	+	239	16080783	ywiC	BSU37300	-	hypothetical protein
3730	 42.82	0	3830535..3831251	-	238	16080784	fnr	BSU37310	-	Crp/Fnr family transcriptional regulator
3731	 47.22	0	3831350..3832537	-	395	16080785	narK	BSU37320	-	nitrite extrusion protein
3732	 48.59	+1	3832673..3834343	-	556	16080786	argS	BSU37330	-	arginyl-tRNA synthetase
3733	 42.19	0	3834340..3834768	-	142	16080787	ywiB	BSU37340	-	hypothetical protein
3734	 46.21	0	3835081..3835212	+	43	16080788	sboA	BSU37350	-	subtilosin A
3735	 36.60	-1	3835169..3835321	+	50	50812300	sboX	BSU37360	-	bacteriocin-like product
3736	 44.91	0	3835346..3836692	+	448	16080789	albA	BSU37370	-	antilisterial bacteriocin (subtilosin) production
3737	 43.83	0	3836705..3836866	+	53	16080790	albB	BSU37380	-	antilisterial bacteriocin (subtilosin) production
3738	 46.25	0	3836863..3837582	+	239	16080791	albC	BSU37390	-	antilisterial bacteriocin (subtilosin) production
3739	 46.68	0	3837575..3838885	+	436	16080792	albD	BSU37400	-	antilisterial bacteriocin (subtilosin) production
3740	 47.37	0	3838875..3840035	+	386	16080793	albE	BSU37410	-	antilisterial bacteriocin (subtilosin) production
3741	 45.98	0	3840040..3841320	+	426	16080794	albF	BSU37420	-	antilisterial bacteriocin (subtilosin) production
3742	 48.01	+1	3841317..3842018	+	233	16080795	albG	BSU37430	-	antilisterial bacteriocin (subtilosin) production
3743	 44.95	0	3842024..3843400	-	458	16080796	ywhL	BSU37440	-	hypothetical protein
3744	 43.44	0	3843439..3844794	-	451	16080797	ywhK	BSU37450	-	hypothetical protein
3745	 35.69	-1	3845024..3846169	+	381	16080798	rapF	BSU37460	-	response regulator aspartate phosphatase
3746	 38.33	-1	3846153..3846272	+	39	16080799	phrF	BSU37470	-	regulator of the activity of phosphatase RapF
3747	 45.57	0	3846371..3846844	+	157	16080800	ywhH	BSU37480	-	hypothetical protein
3748	 50.63	+1	3846876..3847748	-	290	16080801	speB	BSU37490	-	agmatinase
3749	 44.16	0	3847809..3848639	-	276	16080802	speE	BSU37500	-	spermidine synthase
3750	 50.15	+1	3848841..3850784	+	647	16080803	ywhE	BSU37510	-	hypothetical protein
3751	 44.51	0	3851208..3851726	-	172	16080804	ywhD	BSU37520	-	hypothetical protein
3752	 47.42	0	3851740..3852399	-	219	16080805	ywhC	BSU37530	-	hypothetical protein
3753	 42.33	0	3852508..3852696	+	62	16080806	ywhB	BSU37540	-	hypothetical protein
3754	 45.24	0	3852739..3853158	-	139	16080807	ywhA	BSU37550	-	hypothetical protein
3755	 48.93	+1	3853278..3855194	-	638	16080808	thrZ	BSU37560	-	threonyl-tRNA synthetase
3756	 51.82	+1	3856039..3857439	-	466	16080809	mmr	BSU37570	-	methylenomycin A resistance protein
3757	 46.71	0	3857439..3857909	-	156	16080810	ywgB	BSU37580	-	hypothetical protein
3758	 40.92	0	3858021..3858521	-	166	16080811	ywgA	BSU37590	-	hypothetical protein
3759	 47.47	0	3858557..3859858	-	433	16080812	ywfO	BSU37600	-	hypothetical protein
3760	 43.56	0	3860020..3860244	-	74	16080813	ywzC	BSU37610	-	hypothetical protein
3761	 44.40	0	3860459..3861235	+	258	16080814	rsfA	BSU37620	-	transcriptional regulatory protein
3762	 52.41	+1	3861379..3862269	-	296	16080815	ywfM	BSU37630	-	hypothetical protein
3763	 47.40	0	3862437..3863282	-	281	16080816	ywfL	BSU37640	-	hypothetical protein
3764	 44.00	0	3863331..3864230	-	299	16080817	ywfK	BSU37650	-	hypothetical protein
3765	 45.06	0	3864377..3865348	-	323	16080818	eutD	BSU37660	-	phosphotransacetylase
3766	 45.07	0	3865633..3866382	+	249	161511066	ywfI	BSU37670	-	putative heme peroxidase
3767	 45.64	0	3866515..3867294	+	259	16080820	ywfH	BSU37680	-	hypothetical protein
3768	 47.00	0	3867309..3868508	-	399	16080821	ywfG	BSU37690	-	transaminase
3769	 45.99	0	3868509..3869693	-	394	16080822	ywfF	BSU37700	-	hypothetical protein
3770	 44.19	0	3869690..3871108	-	472	16080823	ywfE	BSU37710	-	hypothetical protein
3771	 48.31	+1	3871127..3871894	-	255	16080824	ywfD	BSU37720	-	hypothetical protein
3772	 45.90	0	3871891..3872598	-	235	16080825	ywfC	BSU37730	-	hypothetical protein
3773	 40.16	0	3872588..3873202	-	204	16080826	ywfB	BSU37740	-	hypothetical protein
3774	 46.97	0	3873354..3874592	-	412	16080827	ywfA	BSU37750	-	hypothetical protein
3775	 47.13	0	3874802..3876214	-	470	16080828	rocC	BSU37760	-	amino acid permease
3776	 44.33	0	3876214..3877914	-	566	16080829	rocB	BSU37770	-	involved in arginine and ornithine utilization
3777	 48.19	+1	3877988..3879535	-	515	16080830	rocA	BSU37780	-	1-pyrroline-5-carboxylate dehydrogenase
3778	 49.57	+1	3879762..3881036	-	424	16080831	rocG	BSU37790	-	glutamate dehydrogenase
3779	 42.15	0	3881213..3881677	-	154	16080832	yweA	BSU37800	-	hypothetical protein
3780	 45.83	0	3882001..3882456	-	151	50812301	spsL	BSU37810	-	spore coat polysaccharide synthesis
3781	 49.77	+1	3882449..3883300	-	283	50812302	spsK	BSU37820	-	spore coat polysaccharide synthesis
3782	 49.68	+1	3883314..3884261	-	315	16080834	spsJ	BSU37830	-	spore coat polysaccharide synthesis
3783	 44.40	0	3884261..3885001	-	246	16080835	spsI	BSU37840	-	spore coat polysaccharide synthesis
3784	 46.47	0	3885026..3886045	-	339	16080836	spsG	BSU37850	-	spore coat polysaccharide synthesis
3785	 47.36	0	3886052..3886771	-	239	16080837	spsF	BSU37860	-	spore coat polysaccharide synthesis
3786	 49.29	+1	3886764..3887885	-	373	16080838	spsE	BSU37870	-	spore coat polysaccharide synthesis
3787	 46.32	0	3887885..3888754	-	289	16080839	spsD	BSU37880	-	spore coat polysaccharide synthesis
3788	 48.46	+1	3888755..3889924	-	389	16080840	spsC	BSU37890	-	spore coat polysaccharide synthesis
3789	 44.82	0	3889945..3891363	-	472	16080841	spsB	BSU37900	-	spore coat polysaccharide synthesis
3790	 43.58	0	3891368..3892138	-	256	16080842	spsA	BSU37910	-	spore coat polysaccharide synthesis
3791	 49.63	+1	3892458..3893003	+	181	16080843	ywdL	BSU37920	-	hypothetical protein
3792	 47.66	0	3893076..3893417	-	113	16080844	ywdK	BSU37930	-	hypothetical protein
3793	 47.14	0	3893418..3894800	-	460	16080845	ywdJ	BSU37940	-	hypothetical protein
3794	 47.80	0	3894820..3895137	-	105	16080846	ywdI	BSU37950	-	hypothetical protein
3795	 49.27	+1	3895305..3896678	+	457	16080847	ywdH	BSU37960	-	hypothetical protein
3796	 48.53	+1	3896703..3897380	-	225	16080848	ung	BSU37970	-	uracil-DNA glycosylase
3797	 47.58	0	3897394..3898200	-	268	16080849	ywdF	BSU37980	-	hypothetical protein
3798	 44.94	0	3898291..3898824	-	177	16080850	ywdE	BSU37990	-	hypothetical protein
3799	 41.87	0	3898872..3899363	-	163	16080851	ywdD	BSU38000	-	hypothetical protein
3800	 46.85	0	3899406..3899834	+	142	16080852	ywdC	BSU38010	-	hypothetical protein
3801	 48.16	+1	3899983..3900798	+	271	16080853	thiD	BSU38020	-	pyridoxal kinase
3802	 38.15	-1	3900888..3901136	-	82	16080854	ywdA	BSU38030	-	hypothetical protein
3803	 48.72	+1	3901230..3902672	-	480	16080855	sacA	BSU38040	-	sucrase-6-phosphate hydrolase
3804	 47.04	0	3902669..3904054	-	461	50812303	sacP	BSU38050	-	phosphotransferase system (PTS) sucrose-specific enzyme IIBC component
3805	 45.65	0	3904356..3905126	+	256	16080857	ywcJ	BSU38060	-	hypothetical protein
3806	 43.44	0	3905165..3905995	-	276	16080858	sacT	BSU38070	-	transcriptional antiterminator
3807	 50.83	+1	3906035..3906337	-	100	16080859	ywcI	BSU38080	-	hypothetical protein
3808	 47.87	0	3906867..3909287	+	806	16080860	vpr	BSU38090	-	extracellular serine protease
3809	 48.70	+1	3909325..3910326	-	333	16080861	ywcH	BSU38100	-	hypothetical protein
3810	 43.73	0	3910500..3911249	-	249	16080862	nfrA	BSU38110	-	FMN-containing NADPH-linked nitro/flavin reductase
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.