IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3641	 40.43	0	3747443..3747724	-	93	16080695	spoIIID	BSU36420	-	transcriptional regulator
3642	 36.94	-1	3747739..3747849	-	36	16080696	usd	BSU36430	-	required for translation of spoIIID
3643	 43.00	0	3748074..3748487	+	137	16080697	ywoH	BSU36440	-	hypothetical protein
3644	 45.51	0	3748509..3749699	+	396	16080698	ywoG	BSU36450	-	hypothetical protein
3645	 43.28	0	3749790..3751196	-	468	16080699	ywoF	BSU36460	-	hypothetical protein
3646	 48.27	+1	3751302..3752774	-	490	16080700	ywoE	BSU36470	-	hypothetical protein
3647	 47.46	0	3752955..3754313	-	452	16080701	ywoD	BSU36480	-	hypothetical protein
3648	 47.19	0	3754313..3754882	-	189	16080702	ywoC	BSU36490	-	hypothetical protein
3649	 46.45	0	3755066..3755530	-	154	16080703	ywoB	BSU36500	-	hypothetical protein
3650	 50.45	+1	3755812..3757026	+	404	16080704	nrgA	BSU36510	-	ammonium transporter
3651	 43.87	0	3757038..3757388	+	116	16080705	nrgB	BSU36520	-	nitrogen-regulated PII-like protein
3652	 44.16	0	3757569..3758150	+	193	16080706	ywoA	BSU36530	-	hypothetical protein
3653	 43.74	0	3758191..3758613	-	140	16080707	ywnJ	BSU36540	-	hypothetical protein
3654	 41.08	0	3758724..3759575	-	283	16080708	spoIIQ	BSU36550	-	required for completion of engulfment
3655	 47.15	0	3759716..3760207	+	163	16080709	ywnH	BSU36560	-	hypothetical protein
3656	 45.66	0	3760204..3760722	+	172	16080710	ywnG	BSU36570	-	hypothetical protein
3657	 41.84	0	3761009..3761443	-	144	16080711	ywnF	BSU36580	-	hypothetical protein
3658	 43.06	0	3761686..3763134	+	482	16080712	ywnE	BSU36590	-	hypothetical protein
3659	 44.32	0	3763155..3763928	-	257	16080713	mta	BSU36600	-	MerR family transcriptional regulator
3660	 42.19	0	3764073..3764456	+	127	16080714	ywnC	BSU36610	-	hypothetical protein
3661	 45.79	0	3764491..3765132	-	213	16080715	ywnB	BSU36620	-	hypothetical protein
3662	 42.29	0	3765200..3765601	-	133	16080716	ywnA	BSU36630	-	hypothetical protein
3663	 50.70	+1	3765736..3767445	-	569	16080717	ureC	BSU36640	-	urease subunit alpha
3664	 50.13	+1	3767442..3767816	-	124	16080718	ureB	BSU36650	-	urease (beta subunit)
3665	 50.31	+1	3767813..3768130	-	105	16080719	ureA	BSU36660	-	urease subunit gamma
3666	 40.21	0	3769127..3769315	-	62	16080720	csbD	BSU36670	-	sigma-B-controlled gene
3667	 40.83	0	3769388..3769867	-	159	16080721	ywmF	BSU36680	-	hypothetical protein
3668	 40.12	0	3770023..3771156	-	377	16080722	rapB	BSU36690	-	response regulator aspartate phosphatase
3669	 46.30	0	3771348..3772373	-	341	16080723	moaA	BSU36700	-	molybdenum cofactor biosynthesis protein A
3670	 46.51	0	3772389..3773177	-	262	16080724	fdhD	BSU36710	-	formate dehydrogenase accessory protein
3671	 36.42	-1	3773423..3773584	-	53	16080725	ywmE	BSU36720	-	hypothetical protein
3672	 44.89	0	3773678..3774352	-	224	16080726	ywmD	BSU36730	-	hypothetical protein
3673	 42.69	0	3774676..3775359	-	227	16080727	ywmC	BSU36740	-	hypothetical protein
3674	 45.83	0	3775745..3776776	-	343	16080728	spoIID	BSU36750	-	required for complete dissolution of the asymmetric septum (stage II sporulation)
3675	 45.69	0	3776972..3778282	-	436	16080729	murAA	BSU36760	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3676	 36.17	-1	3778316..3779056	-	246	16080730	ywmB	BSU36770	-	hypothetical protein
3677	 43.29	0	3779185..3779415	-	76	16080731	ywzB	BSU36780	-	hypothetical protein
3678	 38.40	-1	3779585..3780058	+	157	16080732	ywmA	BSU36790	-	hypothetical protein
3679	 52.63	+2	3780092..3780490	-	132	16080733	atpC	BSU36800	-	F0F1 ATP synthase subunit epsilon
3680	 47.33	0	3780514..3781935	-	473	16080734	atpD	BSU36810	-	F0F1 ATP synthase subunit beta
3681	 45.02	0	3781961..3782824	-	287	16080735	atpG	BSU36820	-	F0F1 ATP synthase subunit gamma
3682	 48.77	+1	3782901..3784409	-	502	16080736	atpA	BSU36830	-	F0F1 ATP synthase subunit alpha
3683	 43.41	0	3784426..3784971	-	181	16080737	atpH	BSU36840	-	F0F1 ATP synthase subunit delta
3684	 42.50	0	3784968..3785480	-	170	16080738	atpF	BSU36850	-	F0F1 ATP synthase subunit B
3685	 45.07	0	3785643..3785855	-	70	16080739	atpE	BSU36860	-	F0F1 ATP synthase subunit C
3686	 43.13	0	3785901..3786635	-	244	16080740	atpB	BSU36870	-	F0F1 ATP synthase subunit A
3687	 39.32	0	3786643..3787026	-	127	16080741	atpI	BSU36880	-	ATP synthase (subunit i)
3688	 44.44	0	3787449..3788078	-	209	16080742	upp	BSU36890	-	uracil phosphoribosyltransferase
3689	 45.75	0	3788213..3789460	-	415	16080743	glyA	BSU36900	-	serine hydroxymethyltransferase
3690	 52.67	+2	3789667..3790209	-	180	16080744	ywlG	BSU36910	-	hypothetical protein
3691	 48.22	+1	3790222..3790671	-	149	16080745	ywlF	BSU36920	-	ribose-5-phosphate isomerase B
3692	 45.25	0	3790828..3791280	-	150	16080746	ywlE	BSU36930	-	hypothetical protein
3693	 49.64	+1	3791356..3791913	-	185	16080747	ywlD	BSU36940	-	hypothetical protein
3694	 51.49	+1	3791992..3793032	-	346	16080748	ywlC	BSU36950	-	hypothetical protein
3695	 46.62	0	3793189..3793632	-	147	16080749	ywlB	BSU36960	-	hypothetical protein
3696	 42.07	0	3793699..3794373	-	224	16080750	spoIIR	BSU36970	-	required for processing of pro-sigma-E (extracellular signal interacting with SpoIIGA?) (stage II sporulation)
3697	 37.19	-1	3794514..3794876	+	120	16080751	ywlA	BSU36980	-	hypothetical protein
3698	 46.88	0	3794893..3795180	-	95	16080752	ywkF	BSU36990	-	hypothetical protein
3699	 45.56	0	3795240..3796106	-	288	16080753	ywkE	BSU37000	-	hypothetical protein
3700	 46.41	0	3796108..3797178	-	356	16080754	prfA	BSU37010	-	peptide chain release factor 1
3701	 46.51	0	3797304..3797690	+	128	16080755	ywkD	BSU37020	-	hypothetical protein
3702	 46.67	0	3797812..3798366	+	184	16080756	racA	BSU37030	-	polar chromosome segregation protein
3703	 43.02	0	3798400..3799359	-	319	16080757	ywkB	BSU37040	-	hypothetical protein
3704	 42.60	0	3799441..3801189	-	582	16080758	ywkA	BSU37050	-	malate dehydrogenase
3705	 46.77	0	3801428..3802015	-	195	16080759	tdk	BSU37060	-	thymidine kinase
3706	 39.80	0	3802104..3802304	-	66	16080760	rpmE	BSU37070	-	50S ribosomal protein L31
3707	 46.50	0	3802423..3803706	-	427	16080761	rho	BSU37080	-	transcription termination factor Rho
3708	 50.00	+1	3804113..3805078	-	321	16080762	glpX	BSU37090	-	fructose 1,6-bisphosphatase II
3709	 50.08	+1	3805109..3806398	-	429	16080763	murAB	BSU37100	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3710	 46.01	0	3806777..3807415	-	212	50812299	ywjH	BSU37110	-	putative translaldolase
3711	 43.94	0	3807535..3808392	-	285	16080765	fbaA	BSU37120	-	fructose-bisphosphate aldolase
3712	 45.60	0	3808573..3808947	-	124	16080766	spo0F	BSU37130	-	two-component response regulator
3713	 46.74	0	3809113..3809634	+	173	16080767	ywjG	BSU37140	-	hypothetical protein
3714	 47.01	0	3809716..3811323	-	535	16080768	pyrG	BSU37150	-	CTP synthetase
3715	 40.61	0	3811565..3812086	-	173	16080769	rpoE	BSU37160	-	DNA-directed RNA polymerase subunit delta
3716	 48.95	+1	3812269..3813408	-	379	16080770	acdA	BSU37170	-	acyl-CoA dehydrogenase
3717	 48.87	+1	3813405..3815522	-	705	16080771	ywjF	BSU37180	-	hypothetical protein
3718	 44.19	0	3815677..3816873	+	398	16080772	ywjE	BSU37190	-	hypothetical protein
3719	 46.73	0	3816886..3817848	+	320	16080773	uvsE	BSU37200	-	putative UV damage endonuclease
3720	 37.00	-1	3817929..3818201	+	90	16080774	ywjC	BSU37210	-	hypothetical protein
3721	 43.43	0	3818243..3818767	-	174	16080775	ywjB	BSU37220	-	hypothetical protein
3722	 48.21	+1	3818777..3820504	-	575	16080776	ywjA	BSU37230	-	hypothetical protein
3723	 45.31	0	3820593..3822095	-	500	16080777	ywiE	BSU37240	-	hypothetical protein
3724	 50.15	+1	3822581..3823252	-	223	16080778	narI	BSU37250	-	nitrate reductase (gamma subunit)
3725	 48.83	+1	3823249..3823803	-	184	16080779	narJ	BSU37260	-	nitrate reductase (protein J)
3726	 48.09	+1	3823829..3825292	-	487	16080780	narH	BSU37270	-	nitrate reductase (beta subunit)
3727	 49.96	+1	3825282..3828968	-	1228	16080781	narG	BSU37280	-	nitrate reductase (alpha subunit)
3728	 39.20	0	3829164..3829640	-	158	16080782	arfM	BSU37290	-	transcriptional regulator
3729	 47.78	0	3829784..3830503	+	239	16080783	ywiC	BSU37300	-	hypothetical protein
3730	 42.82	0	3830535..3831251	-	238	16080784	fnr	BSU37310	-	Crp/Fnr family transcriptional regulator
3731	 47.22	0	3831350..3832537	-	395	16080785	narK	BSU37320	-	nitrite extrusion protein
3732	 48.59	+1	3832673..3834343	-	556	16080786	argS	BSU37330	-	arginyl-tRNA synthetase
3733	 42.19	0	3834340..3834768	-	142	16080787	ywiB	BSU37340	-	hypothetical protein
3734	 46.21	0	3835081..3835212	+	43	16080788	sboA	BSU37350	-	subtilosin A
3735	 36.60	-1	3835169..3835321	+	50	50812300	sboX	BSU37360	-	bacteriocin-like product
3736	 44.91	0	3835346..3836692	+	448	16080789	albA	BSU37370	-	antilisterial bacteriocin (subtilosin) production
3737	 43.83	0	3836705..3836866	+	53	16080790	albB	BSU37380	-	antilisterial bacteriocin (subtilosin) production
3738	 46.25	0	3836863..3837582	+	239	16080791	albC	BSU37390	-	antilisterial bacteriocin (subtilosin) production
3739	 46.68	0	3837575..3838885	+	436	16080792	albD	BSU37400	-	antilisterial bacteriocin (subtilosin) production
3740	 47.37	0	3838875..3840035	+	386	16080793	albE	BSU37410	-	antilisterial bacteriocin (subtilosin) production
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.