IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3589	 43.06	0	3698473..3699654	-	393	16080643	ywsC	BSU35900	-	hypothetical protein
3590	 47.81	0	3700438..3701418	+	326	16080644	rbsR	BSU35910	-	LacI family transcription regulator
3591	 50.91	+1	3701420..3702301	+	293	16080645	rbsK	BSU35920	-	ribokinase
3592	 45.20	0	3702298..3702693	+	131	16080646	rbsD	BSU35930	-	D-ribose pyranase
3593	 46.49	0	3702709..3704190	+	493	16080647	rbsA	BSU35940	-	ribose ABC transporter ATP-binding protein
3594	 47.88	0	3704192..3705160	+	322	16080648	rbsC	BSU35950	-	ribose ABC transporter (permease)
3595	 45.53	0	3705172..3706089	+	305	16080649	rbsB	BSU35960	-	ribose ABC transporter (ribose-binding protein)
3596	 41.34	0	3706171..3706707	+	178	16080650	ywsB	BSU35970	-	hypothetical protein
3597	 42.09	0	3706863..3707159	+	98	16080651	ywsA	BSU35980	-	hypothetical protein
3598	 45.27	0	3707199..3707726	-	175	16080652	ywrO	BSU35990	-	hypothetical protein
3599	 43.36	0	3707826..3708593	-	255	16080653	alsD	BSU36000	-	alpha-acetolactate decarboxylase
3600	 45.75	0	3708655..3710370	-	571	16080654	alsS	BSU36010	-	acetolactate synthase
3601	 43.45	0	3710525..3711433	+	302	16080655	alsR	BSU36020	-	LysR family transcriptional regulator
3602	 37.77	-1	3711644..3712972	+	442	16080656	ywrK	BSU36030	-	hypothetical protein
3603	 35.99	-1	3713029..3713706	-	225	16080657	ywrJ	BSU36040	-	hypothetical protein
3604	 34.56	-1	3713766..3714908	-	380	16080658	cotB	BSU36050	-	spore coat protein (outer)
3605	 40.77	0	3715036..3716124	-	362	16080659	cotH	BSU36060	-	spore coat protein (inner)
3606	 37.59	-1	3716265..3716852	+	195	16080660	cotG	BSU36070	-	morphogenetic protein
3607	 45.95	0	3717026..3717643	+	205	16080661	ywrF	BSU36080	-	hypothetical protein
3608	 32.44	-2	3717821..3718156	+	111	16080662	ywrE	BSU36090	-	hypothetical protein
3609	 50.25	+1	3718161..3719738	-	525	16080663	ywrD	BSU36100	-	hypothetical protein
3610	 43.82	0	3719952..3720428	+	158	16080664	ywrC	BSU36110	-	hypothetical protein
3611	 46.13	0	3720442..3721035	+	197	16080665	ywrB	BSU36120	-	hypothetical protein
3612	 51.40	+1	3721032..3721568	+	178	16080666	ywrA	BSU36130	-	hypothetical protein
3613	 44.14	0	3721595..3721816	-	73	16080667	ywqO	BSU36140	-	hypothetical protein
3614	 44.51	0	3721813..3722358	-	181	16080668	ywqN	BSU36150	-	hypothetical protein
3615	 43.54	0	3722481..3723362	+	293	16080669	ywqM	BSU36160	-	hypothetical protein
3616	 47.00	0	3723447..3724163	-	238	16080670	ywqL	BSU36170	-	hypothetical protein
3617	 34.41	-1	3724173..3724637	-	154	16080671	ywqK	BSU36180	-	hypothetical protein
3618	 41.29	0	3724627..3726435	-	602	16080672	ywqJ	BSU36190	-	hypothetical protein
3619	 42.15	0	3726454..3726714	-	86	16080673	ywqI	BSU36200	-	hypothetical protein
3620	 38.77	0	3726724..3727146	-	140	16080674	ywqH	BSU36210	-	hypothetical protein
3621	 42.49	0	3727538..3728323	-	261	16080675	ywqG	BSU36220	-	hypothetical protein
3622	 47.69	0	3728515..3729837	-	440	16080676	ywqF	BSU36230	-	hypothetical protein
3623	 45.62	0	3730032..3730796	-	254	16080677	ywqE	BSU36240	-	hypothetical protein
3624	 46.22	0	3730849..3731562	-	237	16080678	ywqD	BSU36250	-	hypothetical protein
3625	 43.64	0	3731552..3732298	-	248	16080679	ywqC	BSU36260	-	hypothetical protein
3626	 45.81	0	3732879..3734489	+	536	16080680	ywqB	BSU36270	-	hypothetical protein
3627	 48.97	+1	3734476..3737244	+	922	16080681	ywqA	BSU36280	-	hypothetical protein
3628	 47.67	0	3737370..3738227	-	285	16080682	ywpJ	BSU36290	-	hypothetical protein
3629	 46.59	0	3738233..3739009	-	258	16080683	glcR	BSU36300	-	DeoR family transcriptional regulator
3630	 47.66	0	3739233..3739574	-	113	16080684	ywpH	BSU36310	-	hypothetical protein
3631	 33.85	-2	3739651..3740034	-	127	16080685	ywpG	BSU36320	-	hypothetical protein
3632	 40.15	0	3740209..3740619	+	136	16080686	ywpF	BSU36330	-	hypothetical protein
3633	 41.10	0	3740758..3741066	-	102	16080687	ywpE	BSU36340	-	hypothetical protein
3634	 40.74	0	3741410..3742246	+	278	16080688	ywpD	BSU36350	-	hypothetical protein
3635	 46.06	0	3742293..3742685	-	130	16080689	mscL	BSU36360	-	large conductance mechanosensitive channel protein
3636	 45.86	0	3742784..3743182	-	132	16080690	ywpB	BSU36370	-	hypothetical protein
3637	 38.12	-1	3743374..3744438	+	354	16080691	rapD	BSU36380	-	response regulator aspartate phosphatase
3638	 46.72	0	3744461..3745267	-	268	16080692	flhP	BSU36390	-	flagellar hook-basal body protein
3639	 44.53	0	3745301..3746113	-	270	16080693	flhO	BSU36400	-	flagellar basal-body rod protein
3640	 46.01	0	3746276..3747277	-	333	50812298	mbl	BSU36410	-	MreB-like protein
3641	 40.43	0	3747443..3747724	-	93	16080695	spoIIID	BSU36420	-	transcriptional regulator
3642	 36.94	-1	3747739..3747849	-	36	16080696	usd	BSU36430	-	required for translation of spoIIID
3643	 43.00	0	3748074..3748487	+	137	16080697	ywoH	BSU36440	-	hypothetical protein
3644	 45.51	0	3748509..3749699	+	396	16080698	ywoG	BSU36450	-	hypothetical protein
3645	 43.28	0	3749790..3751196	-	468	16080699	ywoF	BSU36460	-	hypothetical protein
3646	 48.27	+1	3751302..3752774	-	490	16080700	ywoE	BSU36470	-	hypothetical protein
3647	 47.46	0	3752955..3754313	-	452	16080701	ywoD	BSU36480	-	hypothetical protein
3648	 47.19	0	3754313..3754882	-	189	16080702	ywoC	BSU36490	-	hypothetical protein
3649	 46.45	0	3755066..3755530	-	154	16080703	ywoB	BSU36500	-	hypothetical protein
3650	 50.45	+1	3755812..3757026	+	404	16080704	nrgA	BSU36510	-	ammonium transporter
3651	 43.87	0	3757038..3757388	+	116	16080705	nrgB	BSU36520	-	nitrogen-regulated PII-like protein
3652	 44.16	0	3757569..3758150	+	193	16080706	ywoA	BSU36530	-	hypothetical protein
3653	 43.74	0	3758191..3758613	-	140	16080707	ywnJ	BSU36540	-	hypothetical protein
3654	 41.08	0	3758724..3759575	-	283	16080708	spoIIQ	BSU36550	-	required for completion of engulfment
3655	 47.15	0	3759716..3760207	+	163	16080709	ywnH	BSU36560	-	hypothetical protein
3656	 45.66	0	3760204..3760722	+	172	16080710	ywnG	BSU36570	-	hypothetical protein
3657	 41.84	0	3761009..3761443	-	144	16080711	ywnF	BSU36580	-	hypothetical protein
3658	 43.06	0	3761686..3763134	+	482	16080712	ywnE	BSU36590	-	hypothetical protein
3659	 44.32	0	3763155..3763928	-	257	16080713	mta	BSU36600	-	MerR family transcriptional regulator
3660	 42.19	0	3764073..3764456	+	127	16080714	ywnC	BSU36610	-	hypothetical protein
3661	 45.79	0	3764491..3765132	-	213	16080715	ywnB	BSU36620	-	hypothetical protein
3662	 42.29	0	3765200..3765601	-	133	16080716	ywnA	BSU36630	-	hypothetical protein
3663	 50.70	+1	3765736..3767445	-	569	16080717	ureC	BSU36640	-	urease subunit alpha
3664	 50.13	+1	3767442..3767816	-	124	16080718	ureB	BSU36650	-	urease (beta subunit)
3665	 50.31	+1	3767813..3768130	-	105	16080719	ureA	BSU36660	-	urease subunit gamma
3666	 40.21	0	3769127..3769315	-	62	16080720	csbD	BSU36670	-	sigma-B-controlled gene
3667	 40.83	0	3769388..3769867	-	159	16080721	ywmF	BSU36680	-	hypothetical protein
3668	 40.12	0	3770023..3771156	-	377	16080722	rapB	BSU36690	-	response regulator aspartate phosphatase
3669	 46.30	0	3771348..3772373	-	341	16080723	moaA	BSU36700	-	molybdenum cofactor biosynthesis protein A
3670	 46.51	0	3772389..3773177	-	262	16080724	fdhD	BSU36710	-	formate dehydrogenase accessory protein
3671	 36.42	-1	3773423..3773584	-	53	16080725	ywmE	BSU36720	-	hypothetical protein
3672	 44.89	0	3773678..3774352	-	224	16080726	ywmD	BSU36730	-	hypothetical protein
3673	 42.69	0	3774676..3775359	-	227	16080727	ywmC	BSU36740	-	hypothetical protein
3674	 45.83	0	3775745..3776776	-	343	16080728	spoIID	BSU36750	-	required for complete dissolution of the asymmetric septum (stage II sporulation)
3675	 45.69	0	3776972..3778282	-	436	16080729	murAA	BSU36760	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3676	 36.17	-1	3778316..3779056	-	246	16080730	ywmB	BSU36770	-	hypothetical protein
3677	 43.29	0	3779185..3779415	-	76	16080731	ywzB	BSU36780	-	hypothetical protein
3678	 38.40	-1	3779585..3780058	+	157	16080732	ywmA	BSU36790	-	hypothetical protein
3679	 52.63	+2	3780092..3780490	-	132	16080733	atpC	BSU36800	-	F0F1 ATP synthase subunit epsilon
3680	 47.33	0	3780514..3781935	-	473	16080734	atpD	BSU36810	-	F0F1 ATP synthase subunit beta
3681	 45.02	0	3781961..3782824	-	287	16080735	atpG	BSU36820	-	F0F1 ATP synthase subunit gamma
3682	 48.77	+1	3782901..3784409	-	502	16080736	atpA	BSU36830	-	F0F1 ATP synthase subunit alpha
3683	 43.41	0	3784426..3784971	-	181	16080737	atpH	BSU36840	-	F0F1 ATP synthase subunit delta
3684	 42.50	0	3784968..3785480	-	170	16080738	atpF	BSU36850	-	F0F1 ATP synthase subunit B
3685	 45.07	0	3785643..3785855	-	70	16080739	atpE	BSU36860	-	F0F1 ATP synthase subunit C
3686	 43.13	0	3785901..3786635	-	244	16080740	atpB	BSU36870	-	F0F1 ATP synthase subunit A
3687	 39.32	0	3786643..3787026	-	127	16080741	atpI	BSU36880	-	ATP synthase (subunit i)
3688	 44.44	0	3787449..3788078	-	209	16080742	upp	BSU36890	-	uracil phosphoribosyltransferase
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.