IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3555	 42.88	0	3650909..3651589	-	226	16080609	tuaF	BSU35560	-	biosynthesis of teichuronic acid
3556	 42.54	0	3651618..3653084	-	488	16080610	tuaE	BSU35570	-	biosynthesis of teichuronic acid
3557	 45.09	0	3653169..3654554	-	461	16080611	tuaD	BSU35580	-	UDP-glucose 6-dehydrogenase
3558	 50.34	+1	3654616..3655785	-	389	16080612	tuaC	BSU35590	-	biosynthesis of teichuronic acid
3559	 43.66	0	3655782..3657233	-	483	16080613	tuaB	BSU35600	-	colanic acid exporter
3560	 46.30	0	3657383..3657922	-	179	16080614	tuaA	BSU35610	-	biosynthesis of teichuronic acid
3561	 39.17	0	3658149..3659639	-	496	16080615	lytC	BSU35620	-	N-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49)
3562	 37.54	-1	3659678..3661795	-	705	16080616	lytB	BSU35630	-	modifier protein of major autolysin LytC (CWBP76)
3563	 35.28	-1	3661819..3662127	-	102	16080617	lytA	BSU35640	-	membrane bound lipoprotein
3564	 41.80	0	3662311..3663231	+	306	16080618	lytR	BSU35650	-	membrane-bound transcriptional regulator LytR
3565	 46.37	0	3663271..3664413	-	380	16080619	yvyH	BSU35660	-	hypothetical protein
3566	 43.00	0	3664659..3665537	+	292	16080620	gtaB	BSU35670	-	UTP-glucose-1-phosphate uridylyltransferase
3567	 28.82	-2	3666239..3668941	-	900	16080621	ggaB	BSU35680	-	membrane-bound protein
3568	 28.11	-2	3669065..3670405	-	446	16080622	ggaA	BSU35690	-	membrane-bound protein
3569	 40.66	0	3672594..3674177	-	527	16080623	tagH	BSU35700	-	teichoic acids export protein ATP-binding subunit
3570	 37.20	-1	3674197..3675024	-	275	16080624	tagG	BSU35710	-	permease
3571	 34.23	-1	3675189..3677429	-	746	16080625	tagF	BSU35720	-	CDP-glycerol:polyglycerol phosphate glycero-phosphotransferase
3572	 33.14	-2	3677429..3679450	-	673	16080626	tagE	BSU35730	-	UDP-glucose:polyglycerol phosphate glucosyltransferase
3573	 34.10	-1	3679611..3680000	-	129	16080627	tagD	BSU35740	-	glycerol-3-phosphate cytidylyltransferase
3574	 36.71	-1	3680400..3681170	+	256	16080628	tagA	BSU35750	-	polyglycerol phosphate assembly and export (involved in teichoic acid linkage unit synthesis) (teichoic acid biosynthesis)
3575	 32.02	-2	3681203..3682348	+	381	16080629	tagB	BSU35760	-	polyglycerol phosphate assembly/export protein
3576	 35.59	-1	3682468..3683796	+	442	16080630	tagC	BSU35770	-	polyglycerol phosphate assembly and export (teichoic acid biosynthesis)
3577	 44.34	0	3683856..3686498	-	880	16080631	lytD	BSU35780	-	N-acetylglucosaminidase (major autolysin) (CWBP90)
3578	 45.85	0	3686627..3687577	-	316	16080632	pmi	BSU35790	-	mannose-6-phosphate isomerase
3579	 45.48	0	3687842..3689290	+	482	16080633	gerBA	BSU35800	-	component of a germinant receptor
3580	 41.19	0	3689296..3690402	+	368	16080634	gerBB	BSU35810	-	component of a germinant receptor
3581	 43.11	0	3690399..3691523	+	374	16080635	gerBC	BSU35820	-	germination response to the combination of glucose, fructose, L-asparagine, and KCl (earliest stage)
3582	 46.80	0	3691560..3692933	-	457	16080636	ywtG	BSU35830	-	hypothetical protein
3583	 41.28	0	3693266..3694234	+	322	16080637	ywtF	BSU35840	-	hypothetical protein
3584	 44.60	0	3694390..3695250	+	286	16080638	ywtE	BSU35850	-	hypothetical protein
3585	 46.14	0	3695284..3696525	-	413	16080639	ywtD	BSU35860	-	hypothetical protein
3586	 38.10	-1	3696666..3696833	-	55	16080640	ywtC	BSU35870	-	hypothetical protein
3587	 43.74	0	3696848..3697990	-	380	16080641	ywtB	BSU35880	-	hypothetical protein
3588	 39.78	0	3698009..3698458	-	149	16080642	ywtA	BSU35890	-	hypothetical protein
3589	 43.06	0	3698473..3699654	-	393	16080643	ywsC	BSU35900	-	hypothetical protein
3590	 47.81	0	3700438..3701418	+	326	16080644	rbsR	BSU35910	-	LacI family transcription regulator
3591	 50.91	+1	3701420..3702301	+	293	16080645	rbsK	BSU35920	-	ribokinase
3592	 45.20	0	3702298..3702693	+	131	16080646	rbsD	BSU35930	-	D-ribose pyranase
3593	 46.49	0	3702709..3704190	+	493	16080647	rbsA	BSU35940	-	ribose ABC transporter ATP-binding protein
3594	 47.88	0	3704192..3705160	+	322	16080648	rbsC	BSU35950	-	ribose ABC transporter (permease)
3595	 45.53	0	3705172..3706089	+	305	16080649	rbsB	BSU35960	-	ribose ABC transporter (ribose-binding protein)
3596	 41.34	0	3706171..3706707	+	178	16080650	ywsB	BSU35970	-	hypothetical protein
3597	 42.09	0	3706863..3707159	+	98	16080651	ywsA	BSU35980	-	hypothetical protein
3598	 45.27	0	3707199..3707726	-	175	16080652	ywrO	BSU35990	-	hypothetical protein
3599	 43.36	0	3707826..3708593	-	255	16080653	alsD	BSU36000	-	alpha-acetolactate decarboxylase
3600	 45.75	0	3708655..3710370	-	571	16080654	alsS	BSU36010	-	acetolactate synthase
3601	 43.45	0	3710525..3711433	+	302	16080655	alsR	BSU36020	-	LysR family transcriptional regulator
3602	 37.77	-1	3711644..3712972	+	442	16080656	ywrK	BSU36030	-	hypothetical protein
3603	 35.99	-1	3713029..3713706	-	225	16080657	ywrJ	BSU36040	-	hypothetical protein
3604	 34.56	-1	3713766..3714908	-	380	16080658	cotB	BSU36050	-	spore coat protein (outer)
3605	 40.77	0	3715036..3716124	-	362	16080659	cotH	BSU36060	-	spore coat protein (inner)
3606	 37.59	-1	3716265..3716852	+	195	16080660	cotG	BSU36070	-	morphogenetic protein
3607	 45.95	0	3717026..3717643	+	205	16080661	ywrF	BSU36080	-	hypothetical protein
3608	 32.44	-2	3717821..3718156	+	111	16080662	ywrE	BSU36090	-	hypothetical protein
3609	 50.25	+1	3718161..3719738	-	525	16080663	ywrD	BSU36100	-	hypothetical protein
3610	 43.82	0	3719952..3720428	+	158	16080664	ywrC	BSU36110	-	hypothetical protein
3611	 46.13	0	3720442..3721035	+	197	16080665	ywrB	BSU36120	-	hypothetical protein
3612	 51.40	+1	3721032..3721568	+	178	16080666	ywrA	BSU36130	-	hypothetical protein
3613	 44.14	0	3721595..3721816	-	73	16080667	ywqO	BSU36140	-	hypothetical protein
3614	 44.51	0	3721813..3722358	-	181	16080668	ywqN	BSU36150	-	hypothetical protein
3615	 43.54	0	3722481..3723362	+	293	16080669	ywqM	BSU36160	-	hypothetical protein
3616	 47.00	0	3723447..3724163	-	238	16080670	ywqL	BSU36170	-	hypothetical protein
3617	 34.41	-1	3724173..3724637	-	154	16080671	ywqK	BSU36180	-	hypothetical protein
3618	 41.29	0	3724627..3726435	-	602	16080672	ywqJ	BSU36190	-	hypothetical protein
3619	 42.15	0	3726454..3726714	-	86	16080673	ywqI	BSU36200	-	hypothetical protein
3620	 38.77	0	3726724..3727146	-	140	16080674	ywqH	BSU36210	-	hypothetical protein
3621	 42.49	0	3727538..3728323	-	261	16080675	ywqG	BSU36220	-	hypothetical protein
3622	 47.69	0	3728515..3729837	-	440	16080676	ywqF	BSU36230	-	hypothetical protein
3623	 45.62	0	3730032..3730796	-	254	16080677	ywqE	BSU36240	-	hypothetical protein
3624	 46.22	0	3730849..3731562	-	237	16080678	ywqD	BSU36250	-	hypothetical protein
3625	 43.64	0	3731552..3732298	-	248	16080679	ywqC	BSU36260	-	hypothetical protein
3626	 45.81	0	3732879..3734489	+	536	16080680	ywqB	BSU36270	-	hypothetical protein
3627	 48.97	+1	3734476..3737244	+	922	16080681	ywqA	BSU36280	-	hypothetical protein
3628	 47.67	0	3737370..3738227	-	285	16080682	ywpJ	BSU36290	-	hypothetical protein
3629	 46.59	0	3738233..3739009	-	258	16080683	glcR	BSU36300	-	DeoR family transcriptional regulator
3630	 47.66	0	3739233..3739574	-	113	16080684	ywpH	BSU36310	-	hypothetical protein
3631	 33.85	-2	3739651..3740034	-	127	16080685	ywpG	BSU36320	-	hypothetical protein
3632	 40.15	0	3740209..3740619	+	136	16080686	ywpF	BSU36330	-	hypothetical protein
3633	 41.10	0	3740758..3741066	-	102	16080687	ywpE	BSU36340	-	hypothetical protein
3634	 40.74	0	3741410..3742246	+	278	16080688	ywpD	BSU36350	-	hypothetical protein
3635	 46.06	0	3742293..3742685	-	130	16080689	mscL	BSU36360	-	large conductance mechanosensitive channel protein
3636	 45.86	0	3742784..3743182	-	132	16080690	ywpB	BSU36370	-	hypothetical protein
3637	 38.12	-1	3743374..3744438	+	354	16080691	rapD	BSU36380	-	response regulator aspartate phosphatase
3638	 46.72	0	3744461..3745267	-	268	16080692	flhP	BSU36390	-	flagellar hook-basal body protein
3639	 44.53	0	3745301..3746113	-	270	16080693	flhO	BSU36400	-	flagellar basal-body rod protein
3640	 46.01	0	3746276..3747277	-	333	50812298	mbl	BSU36410	-	MreB-like protein
3641	 40.43	0	3747443..3747724	-	93	16080695	spoIIID	BSU36420	-	transcriptional regulator
3642	 36.94	-1	3747739..3747849	-	36	16080696	usd	BSU36430	-	required for translation of spoIIID
3643	 43.00	0	3748074..3748487	+	137	16080697	ywoH	BSU36440	-	hypothetical protein
3644	 45.51	0	3748509..3749699	+	396	16080698	ywoG	BSU36450	-	hypothetical protein
3645	 43.28	0	3749790..3751196	-	468	16080699	ywoF	BSU36460	-	hypothetical protein
3646	 48.27	+1	3751302..3752774	-	490	16080700	ywoE	BSU36470	-	hypothetical protein
3647	 47.46	0	3752955..3754313	-	452	16080701	ywoD	BSU36480	-	hypothetical protein
3648	 47.19	0	3754313..3754882	-	189	16080702	ywoC	BSU36490	-	hypothetical protein
3649	 46.45	0	3755066..3755530	-	154	16080703	ywoB	BSU36500	-	hypothetical protein
3650	 50.45	+1	3755812..3757026	+	404	16080704	nrgA	BSU36510	-	ammonium transporter
3651	 43.87	0	3757038..3757388	+	116	16080705	nrgB	BSU36520	-	nitrogen-regulated PII-like protein
3652	 44.16	0	3757569..3758150	+	193	16080706	ywoA	BSU36530	-	hypothetical protein
3653	 43.74	0	3758191..3758613	-	140	16080707	ywnJ	BSU36540	-	hypothetical protein
3654	 41.08	0	3758724..3759575	-	283	16080708	spoIIQ	BSU36550	-	required for completion of engulfment
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.