IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
306	 49.94	+1	330325..331950	+	541	16077375	lctP	BSU03060	-	L-lactate permease
307	 47.85	0	332258..333538	-	426	16077376	mdr	BSU03070	-	multidrug-efflux transporter
308	 48.72	+1	333651..334118	+	155	16077377	ycgE	BSU03080	-	hypothetical protein
309	 45.56	0	334192..334821	+	209	16077378	ycgF	BSU03090	-	hypothetical protein
310	 47.90	0	334891..335652	+	253	16077379	ycgG	BSU03100	-	hypothetical protein
311	 46.30	0	335684..336817	-	377	16077380	ycgH	BSU03110	-	hypothetical protein
312	 46.94	0	336984..337718	+	244	50812178	ycgI	BSU03120	-	hypothetical protein
313	 48.11	+1	337848..338666	+	272	16077382	nadE	BSU03130	-	NAD synthetase
314	 47.14	0	338716..339309	-	197	16077383	tmrB	BSU03140	-	ATP-binding membrane protein
315	 40.46	0	339585..340145	+	186	16077384	aroK	BSU03150	-	shikimate kinase
316	 48.62	+1	340173..340859	-	228	16077385	ycgJ	BSU03160	-	hypothetical protein
317	 48.72	+1	341052..342026	+	324	16077386	ycgK	BSU03170	-	hypothetical protein
318	 48.59	+1	342098..343054	+	318	16077387	cah	BSU03180	-	cephalosporin C deacetylase
319	 43.93	0	343138..343920	+	260	16077388	ycgL	BSU03190	-	hypothetical protein
320	 43.42	0	344111..345022	+	303	16077389	ycgM	BSU03200	-	hypothetical protein
321	 46.45	0	345039..346586	+	515	16077390	ycgN	BSU03210	-	1-pyrroline-5-carboxylate dehydrogenase
322	 48.67	+1	346782..348131	+	449	16077391	ycgO	BSU03220	-	hypothetical protein
323	 39.81	0	348284..349519	+	411	16077392	ycgP	BSU03230	-	hypothetical protein
324	 41.14	0	349556..350413	-	285	16077393	ycgQ	BSU03240	-	hypothetical protein
325	 45.76	0	350418..351302	-	294	16077394	ycgR	BSU03250	-	hypothetical protein
326	 46.43	0	351402..352256	-	284	16077395	ycgS	BSU03260	-	hypothetical protein
327	 50.25	+1	352418..353428	+	336	16077396	ycgT	BSU03270	-	hypothetical protein
328	 49.38	+1	353460..354911	-	483	16077397	nasF	BSU03280	-	uroporphyrin-III C-methyltransferase
329	 44.55	0	354972..355292	-	106	16077398	nasE	BSU03290	-	assimilatory nitrite reductase (subunit)
330	 49.09	+1	355324..357741	-	805	16077399	nasD	BSU03300	-	assimilatory nitrite reductase (subunit)
331	 48.48	+1	357863..359995	-	710	16077400	nasC	BSU03310	-	assimilatory nitrate reductase (catalytic subunit)
332	 49.29	+1	360002..362314	-	770	16077401	nasB	BSU03320	-	assimilatory nitrate reductase (electron transfer subunit)
333	 50.63	+1	362494..363759	+	421	16077402	nasA	BSU03330	-	nitrate transporter
334	 46.19	0	363815..364732	+	305	16077403	yciA	BSU03340	-	putative GTP cyclohydrolase
335	 41.54	0	364729..365313	+	194	16077404	yciB	BSU03350	-	hypothetical protein
336	 47.07	0	365622..366815	+	397	16077405	yciC	BSU03360	-	hypothetical protein
337	 45.37	0	366864..367544	-	226	16077406	yckA	BSU03370	-	hypothetical protein
338	 45.14	0	367554..368417	-	287	16077407	yckB	BSU03380	-	hypothetical protein
339	 43.64	0	368795..369250	+	151	16077408	yckC	BSU03390	-	hypothetical protein
340	 39.94	0	369332..369664	+	110	16077409	yckD	BSU03400	-	hypothetical protein
341	 43.17	0	369818..371251	+	477	16077410	yckE	BSU03410	-	hypothetical protein
342	 39.60	0	371288..371686	-	132	16077411	nin	BSU03420	-	inhibition of the DNA degrading activity of NucA (competence)
343	 47.75	0	371713..372156	-	147	50812179	nucA	BSU03430	-	nuclease
344	 42.39	0	372330..374051	-	573	16077413	tlpC	BSU03440	-	methyl-accepting chemotaxis protein
345	 44.98	0	374162..374719	-	185	16077414	hxlB	BSU03450	-	6-phospho-3-hexuloisomerase (phi)
346	 44.55	0	374725..375357	-	210	16077415	hxlA	BSU03460	-	3-hexulose-6-phosphate synthase (HPS)
347	 41.87	0	375589..375951	+	120	16077416	hxlR	BSU03470	-	positive regulator of hxlAB expression
348	 49.68	+1	376525..387291	+	3588	16077417	srfAA	BSU03480	-	surfactin synthetase
349	 50.48	+1	387304..398067	+	3587	16077418	srfAB	BSU03490	-	surfactin synthetase
350	 50.35	+1	390440..390580	+	46	16077419	comS	BSU03500	-	regulation of genetic competence; assembly link between other regulatory components of the competence signal transduction pathway
351	 48.99	+1	398104..401928	+	1274	16077420	srfAC	BSU03510	-	surfactin synthetase
352	 50.07	+1	401957..402685	+	242	16077421	srfAD	BSU03520	-	surfactin synthetase
353	 48.94	+1	402786..404015	+	409	16077422	ycxA	BSU03530	-	hypothetical protein
354	 34.41	-1	404030..404587	-	185	16077423	ycxB	BSU03540	-	hypothetical protein
355	 47.71	0	404641..405579	-	312	16077424	ycxC	BSU03550	-	hypothetical protein
356	 47.42	0	405703..407037	+	444	16077425	ycxD	BSU03560	-	hypothetical protein
357	 45.78	0	407210..407707	-	165	50812180	sfp	BSU03570	-	phosphopantetheinyl transferase
358	 50.62	+1	407812..408459	-	215	16077426	yczE	BSU03580	-	hypothetical protein
359	 50.27	+1	408777..409520	-	247	16077427	yckI	BSU03590	-	hypothetical protein
360	 47.38	0	409534..410238	-	234	16077428	yckJ	BSU03600	-	hypothetical protein
361	 41.64	0	410225..411031	-	268	16077429	yckK	BSU03610	-	hypothetical protein
362	 45.82	0	411146..412018	-	290	16077430	yclA	BSU03620	-	hypothetical protein
363	 48.94	+1	412108..412722	+	204	16077431	yclB	BSU03630	-	aromatic acid decarboxylase
364	 47.82	0	412725..414146	+	473	16077432	yclC	BSU03640	-	hypothetical protein
365	 48.26	+1	414163..414852	+	229	16077433	yclD	BSU03650	-	hypothetical protein
366	 46.93	0	414918..415763	+	281	16077434	yclE	BSU03660	-	hypothetical protein
367	 46.11	0	415803..417281	-	492	16077435	yclF	BSU03670	-	hypothetical protein
368	 44.84	0	417561..419315	+	584	16077436	yclG	BSU03680	-	hypothetical protein
369	 35.14	-1	419331..419552	-	73	16077437	yczF	BSU03690	-	hypothetical protein
370	 47.22	0	419678..421312	+	544	16077438	gerKA	BSU03700	-	germination response to the combination of glucose, fructose, L-asparagine, and KCl
371	 44.85	0	421302..422525	+	407	16077439	gerKC	BSU03710	-	germination response to the combination of glucose, fructose, L-asparagine, and KCl
372	 42.87	0	422550..423671	+	373	16077440	gerKB	BSU03720	-	germination response to the combination of glucose, fructose, L-asparagine, and KCl
373	 44.05	0	423776..424456	-	226	16077441	yclH	BSU03730	-	hypothetical protein
374	 44.76	0	424472..425932	-	486	16077442	yclI	BSU03740	-	hypothetical protein
375	 43.27	0	426145..426828	+	227	16077443	yclJ	BSU03750	-	hypothetical protein
376	 43.67	0	426815..428236	+	473	16077444	yclK	BSU03760	-	hypothetical protein
377	 39.51	0	428399..429547	+	382	16077445	rapC	BSU03770	-	response regulator aspartate phosphatase
378	 43.09	0	429531..429653	+	40	16077446	phrC	BSU03780	-	regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF)
379	 49.08	+1	430191..431555	-	454	16077447	yclM	BSU03790	-	aspartate kinase
380	 44.16	0	431940..432890	+	316	16077448	yclN	BSU03800	-	hypothetical protein
381	 43.78	0	432883..433830	+	315	16077449	yclO	BSU03810	-	hypothetical protein
382	 44.27	0	433824..434582	+	252	16077450	yclP	BSU03820	-	hypothetical protein
383	 40.67	0	434604..435557	+	317	16077451	yclQ	BSU03830	-	hypothetical protein
384	 49.68	+1	435604..437022	-	472	16077452	ycnB	BSU03840	-	hypothetical protein
385	 45.85	0	437042..437920	-	292	16077453	ycnC	BSU03850	-	hypothetical protein
386	 47.73	0	438084..438833	-	249	16077454	ycnD	BSU03860	-	hypothetical protein
387	 42.36	0	438850..439137	-	95	16077455	ycnE	BSU03870	-	hypothetical protein
388	 46.35	0	439277..439591	+	104	16077456	yczG	BSU03880	-	hypothetical protein
389	 48.96	+1	439593..441032	-	479	16077457	gabR	BSU03890	-	GntR family transcriptional regulator
390	 50.72	+1	441139..442449	+	436	16077458	gabT	BSU03900	-	4-aminobutyrate aminotransferase
391	 50.11	+1	442518..443906	+	462	16077459	gabD	BSU03910	-	succinate-semialdehyde dehydrogenase
392	 45.49	0	444029..444892	+	287	16077460	glcU	BSU03920	-	glucose uptake
393	 46.95	0	444912..445697	+	261	16077461	gdh	BSU03930	-	glucose-1-dehydrogenase
394	 47.80	0	445742..446356	-	204	16077462	ycnI	BSU03940	-	hypothetical protein
395	 48.65	+1	446369..447994	-	541	16077463	ycnJ	BSU03950	-	hypothetical protein
396	 48.17	+1	448029..448601	-	190	16077464	ycnK	BSU03960	-	hypothetical protein
397	 47.74	0	448766..449119	+	117	16077465	ycnL	BSU03970	-	hypothetical protein
398	 47.19	0	449292..451124	+	610	16077466	mtlA	BSU03980	-	phosphotransferase system (PTS) mannitol-specific enzyme IICBA component
399	 48.41	+1	451177..452277	+	366	16077467	mtlD	BSU03990	-	mannitol-1-phosphate 5-dehydrogenase
400	 49.58	+1	452385..453449	+	354	50812181	ycsA	BSU04000	-	tartrate dehydrogenase
401	 39.18	0	453584..454147	+	187	16077469	sipU	BSU04010	-	type I signal peptidase
402	 46.42	0	454257..454814	-	185	16077470	yczH	BSU04020	-	hypothetical protein
403	 47.33	0	454900..455292	+	130	50812182	ycsD	BSU04030	-	hypothetical protein
404	 46.40	0	455622..456371	+	249	16077472	ycsE	BSU04040	-	hypothetical protein
405	 48.32	+1	456576..457349	+	257	50812183	ycsF	BSU04050	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.