IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3060	 44.70	0	3132435..3133217	+	260	16080113	ytlC	BSU30610	-	hypothetical protein
3061	 46.25	0	3133192..3134004	+	270	16080114	ytlD	BSU30620	-	hypothetical protein
3062	 42.98	0	3134031..3134507	-	158	16080115	ytkD	BSU30630	-	hypothetical protein
3063	 37.78	-1	3134716..3135120	-	134	16080116	ytkC	BSU30640	-	hypothetical protein
3064	 39.95	0	3135286..3135723	-	145	16080117	dps	BSU30650	-	DNA-protecting protein
3065	 43.84	0	3135986..3136423	-	145	16080118	ytkA	BSU30660	-	hypothetical protein
3066	 43.46	0	3136543..3137016	-	157	16080119	luxS	BSU30670	-	S-ribosylhomocysteinase
3067	 45.61	0	3137145..3137372	+	75	16080120	ytjA	BSU30680	-	hypothetical protein
3068	 41.13	0	3137369..3137932	-	187	16080121	ytiB	BSU30690	-	hypothetical protein
3069	 41.77	0	3138026..3138274	-	82	16080122	rpmE2	BSU30700	-	50S ribosomal protein L31 type B
3070	 47.46	0	3138494..3139810	+	438	16080123	ythA	BSU30710	-	hypothetical protein
3071	 43.71	0	3139854..3140894	+	346	16080124	ythB	BSU30720	-	hypothetical protein
3072	 42.26	0	3140943..3141110	+	55	16080125	ythC	BSU30730	-	hypothetical protein
3073	 47.64	0	3141125..3142012	-	295	16080126	mntD	BSU30740	-	manganese ABC transporter
3074	 47.71	0	3142002..3143309	-	435	16080127	mntC	BSU30750	-	manganese ABC transporter membrane protein
3075	 48.07	+1	3143315..3144067	-	250	16080128	mntB	BSU30760	-	manganese ABC transporter ATP-binding protein
3076	 45.82	0	3144086..3145006	-	306	16080129	mntA	BSU30770	-	manganese ABC transporter membrane protein
3077	 44.09	0	3145286..3146401	-	371	16080130	menC	BSU30780	-	O-succinylbenzoate-CoA synthase
3078	 47.78	0	3146398..3147858	-	486	16080131	menE	BSU30790	-	O-succinylbenzoic acid--CoA ligase
3079	 47.43	0	3147949..3148764	-	271	16080132	menB	BSU30800	-	naphthoate synthase
3080	 48.12	+1	3148799..3149623	-	274	16080133	ytxM	BSU30810	-	hypothetical protein
3081	 48.94	+1	3149611..3151353	-	580	16080134	menD	BSU30820	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
3082	 46.33	0	3151350..3152765	-	471	16080135	menF	BSU30830	-	menaquinone-specific isochorismate synthase
3083	 44.86	0	3153054..3153773	+	239	50812282	yteA	BSU30840	-	hypothetical protein
3084	 44.69	0	3153782..3154600	-	272	16080137	ytdA	BSU30850	-	hypothetical protein
3085	 46.62	0	3154772..3156058	+	428	16080138	ytcA	BSU30860	-	hypothetical protein
3086	 46.79	0	3156055..3157005	+	316	16080139	ytcB	BSU30870	-	hypothetical protein
3087	 44.85	0	3157008..3158231	+	407	16080140	ytcC	BSU30880	-	hypothetical protein
3088	 44.68	0	3158305..3158736	-	143	16080141	ytxO	BSU30890	-	hypothetical protein
3089	 43.09	0	3158738..3159793	-	351	16080142	cotS	BSU30900	-	spore coat protein
3090	 46.30	0	3159808..3160941	-	377	16080143	cotSA	BSU30910	-	spore coat protein
3091	 43.58	0	3161131..3162204	+	357	16080144	ytaA	BSU30920	-	hypothetical protein
3092	 42.95	0	3162284..3162751	+	155	16080145	ytaB	BSU30930	-	hypothetical protein
3093	 44.56	0	3162782..3165178	-	798	16080146	glgP	BSU30940	-	glycogen phosphorylase
3094	 45.77	0	3165165..3166619	-	484	16080147	glgA	BSU30950	-	glycogen synthase
3095	 45.45	0	3166616..3167647	-	343	16080148	glgD	BSU30960	-	ADP-glucose pyrophosphorylase
3096	 43.48	0	3167671..3168813	-	380	16080149	glgC	BSU30970	-	glucose-1-phosphate adenylyltransferase
3097	 42.20	0	3168810..3170693	-	627	16080150	glgB	BSU30980	-	glycogen branching enzyme
3098	 41.97	0	3178345..3178923	+	192	16080151	yuaJ	BSU30990	-	hypothetical protein
3099	 42.53	0	3178965..3179486	-	173	16080152	yuaI	BSU31000	-	hypothetical protein
3100	 43.86	0	3179504..3181033	-	509	16080153	yuaG	BSU31010	-	hypothetical protein
3101	 42.48	0	3181054..3181578	-	174	16080154	yuaF	BSU31020	-	hypothetical protein
3102	 41.72	0	3181746..3182234	+	162	16080155	yuaE	BSU31030	-	hypothetical protein
3103	 46.80	0	3182240..3182818	-	192	16080156	yuaD	BSU31040	-	hypothetical protein
3104	 47.28	0	3182906..3184117	-	403	16080157	gbsB	BSU31050	-	alcohol dehydrogenase
3105	 47.11	0	3184131..3185603	-	490	16080158	gbsA	BSU31060	-	glycine betaine aldehyde dehydrogenase
3106	 41.44	0	3185802..3186344	+	180	16080159	yuaC	BSU31070	-	hypothetical protein
3107	 43.22	0	3186542..3187087	+	181	16080160	yuaB	BSU31080	-	hypothetical protein
3108	 42.30	0	3187453..3188121	+	222	16080161	yuaA	BSU31090	-	hypothetical protein
3109	 43.20	0	3188128..3189465	+	445	16080162	yubG	BSU31100	-	hypothetical protein
3110	 37.50	-1	3189501..3189764	-	87	16080163	yubF	BSU31110	-	hypothetical protein
3111	 41.70	0	3189873..3190721	-	282	16080164	yubE	BSU31120	-	hypothetical protein
3112	 46.42	0	3190882..3192417	-	511	16080165	yubD	BSU31130	-	hypothetical protein
3113	 39.71	0	3192902..3193387	+	161	16080166	yubC	BSU31140	-	hypothetical protein
3114	 43.44	0	3193674..3194504	-	276	16080167	uppP	BSU31150	-	undecaprenyl pyrophosphate phosphatase
3115	 40.70	0	3194597..3195763	-	388	16080168	yubA	BSU31160	-	hypothetical protein
3116	 46.50	0	3195945..3196931	+	328	16080169	yulF	BSU31170	-	hypothetical protein
3117	 45.33	0	3196972..3198246	-	424	16080170	yulE	BSU31180	-	L-rhamnose isomerase
3118	 40.32	0	3198272..3198586	-	104	16080171	yulD	BSU31190	-	hypothetical protein
3119	 43.14	0	3198604..3200061	-	485	16080172	yulC	BSU31200	-	hypothetical protein
3120	 44.53	0	3200066..3200842	-	258	16080173	yulB	BSU31210	-	hypothetical protein
3121	 47.34	0	3200899..3202968	-	689	16080174	yuxG	BSU31220	-	short chain dehydrogenase
3122	 43.19	0	3203106..3205094	-	662	16080175	tlpB	BSU31230	-	methyl-accepting chemotaxis protein
3123	 44.46	0	3205208..3207193	-	661	16080176	mcpA	BSU31240	-	methyl-accepting chemotaxis protein
3124	 44.24	0	3207319..3209307	-	662	16080177	tlpA	BSU31250	-	methyl-accepting chemotaxis protein
3125	 44.80	0	3209484..3211472	-	662	16080178	mcpB	BSU31260	-	methyl-accepting chemotaxis protein
3126	 41.87	0	3211630..3212367	+	245	16080179	tgl	BSU31270	-	transglutaminase
3127	 47.09	0	3212892..3213320	-	142	16080180	yugU	BSU31280	-	hypothetical protein
3128	 43.60	0	3213410..3215074	-	554	16080181	yugT	BSU31290	-	hypothetical protein
3129	 42.91	0	3215201..3216505	-	434	16080182	yugS	BSU31300	-	hypothetical protein
3130	 45.58	0	3216533..3217210	-	225	16080183	yugP	BSU31310	-	hypothetical protein
3131	 44.19	0	3217562..3218878	+	438	50812283	yugO	BSU31320	-	hypothetical protein
3132	 48.15	+1	3218875..3219279	-	134	16080185	yugN	BSU31330	-	hypothetical protein
3133	 41.94	0	3219339..3219710	-	123	16080186	yugM	BSU31340	-	hypothetical protein
3134	 43.95	0	3219769..3221124	-	451	16080187	pgi	BSU31350	-	glucose-6-phosphate isomerase
3135	 44.25	0	3221236..3222408	-	390	16080188	yugK	BSU31360	-	hypothetical protein
3136	 45.53	0	3222512..3223675	-	387	16080189	yugJ	BSU31370	-	hypothetical protein
3137	 45.15	0	3223905..3224141	+	78	16080190	yuzA	BSU31380	-	hypothetical protein
3138	 39.69	0	3224219..3224611	-	130	16080191	yugI	BSU31390	-	general stress protein 13
3139	 47.46	0	3224813..3225973	-	386	50812284	alaT	BSU31400	-	hypothetical protein
3140	 42.91	0	3225974..3226474	-	166	16080193	alaR	BSU31410	-	AsnC/Lrp family transcriptional regulator
3141	 45.01	0	3226622..3227443	+	273	16080194	yugF	BSU31420	-	hypothetical protein
3142	 44.94	0	3227472..3227738	-	88	16080195	yugE	BSU31430	-	hypothetical protein
3143	 48.45	+1	3227819..3228982	+	387	16080196	patB	BSU31440	-	aminotransferase
3144	 43.33	0	3229108..3230397	+	429	16080197	kinB	BSU31450	-	two-component sensor histidine kinase
3145	 45.99	0	3230443..3230829	+	128	16080198	kapB	BSU31460	-	kinase-associated protein B
3146	 41.26	0	3230856..3231473	-	205	16080199	kapD	BSU31470	-	sporulation inhibitor KapD
3147	 49.36	+1	3231684..3232862	+	392	50812285	yuxJ	BSU31480	-	hypothetical protein
3148	 43.95	0	3232955..3234829	+	624	16080201	pbpD	BSU31490	-	penicillin-binding protein 4
3149	 44.93	0	3234850..3235263	+	137	16080202	yuxK	BSU31500	-	hypothetical protein
3150	 37.56	-1	3235466..3236080	-	204	16080203	yufK	BSU31510	-	hypothetical protein
3151	 44.26	0	3236201..3237802	+	533	16080204	yufL	BSU31520	-	sensory histidine kinase DcuS
3152	 40.82	0	3237795..3238502	+	235	16080205	yufM	BSU31530	-	hypothetical protein
3153	 45.58	0	3239001..3240053	+	350	16080206	yufN	BSU31540	-	hypothetical protein
3154	 47.55	0	3240129..3241661	+	510	16080207	yufO	BSU31550	-	hypothetical protein
3155	 49.67	+1	3241654..3242700	+	348	16080208	yufP	BSU31560	-	hypothetical protein
3156	 49.90	+1	3242701..3243660	+	319	16080209	yufQ	BSU31570	-	hypothetical protein
3157	 42.84	0	3243814..3245160	+	448	16080210	maeN	BSU31580	-	Na+/malate symporter
3158	 47.22	0	3245196..3245411	-	71	16080211	yufS	BSU31590	-	hypothetical protein
3159	 44.68	0	3245642..3248047	+	801	161511068	mrpA	BSU31600	-	monovalent cation/H+ antiporter subunit A
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.