IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2994	 43.17	0	3063860..3064774	-	304	16080047	ytlQ	BSU29950	-	hypothetical protein
2995	 43.48	0	3064800..3065351	-	183	16080048	ytlP	BSU29960	-	hypothetical protein
2996	 47.54	0	3065500..3066435	+	311	16080049	ytkP	BSU29970	-	hypothetical protein
2997	 47.84	0	3066469..3067860	-	463	16080050	ytjP	BSU29980	-	dipeptidase PepV
2998	 48.50	+1	3067957..3069255	+	432	16080051	ytiP	BSU29990	-	hypothetical protein
2999	 41.97	0	3069294..3070451	-	385	16080052	ythQ	BSU30000	-	hypothetical protein
3000	 45.85	0	3070448..3071158	-	236	16080053	ythP	BSU30010	-	hypothetical protein
3001	 37.84	-1	3071449..3071670	+	73	16080054	ytzE	BSU30020	-	hypothetical protein
3002	 47.47	0	3071791..3072264	-	157	16080055	ytzF	BSU30030	-	hypothetical protein
3003	 50.96	+1	3072249..3072509	-	86	16080056	ytzG	BSU30040	-	hypothetical protein
3004	 45.57	0	3072578..3074212	-	544	16080057	ytgP	BSU30050	-	hypothetical protein
3005	 46.29	0	3074720..3075676	+	318	16080058	ytfP	BSU30060	-	hypothetical protein
3006	 45.16	0	3075865..3077403	+	512	16080059	opuD	BSU30070	-	glycine betaine transporter
3007	 41.53	0	3077440..3077622	-	60	16080060	yteV	BSU30080	-	hypothetical protein
3008	 46.94	0	3077690..3078358	-	222	16080061	yteU	BSU30090	-	hypothetical protein
3009	 47.01	0	3078380..3079666	-	428	16080062	yteT	BSU30100	-	hypothetical protein
3010	 43.75	0	3079678..3080157	-	159	16080063	yteS	BSU30110	-	hypothetical protein
3011	 47.15	0	3080178..3081299	-	373	16080064	yteR	BSU30120	-	hypothetical protein
3012	 47.76	0	3081307..3081798	-	163	16080065	yteQ	BSU30130	-	hypothetical protein
3013	 41.47	0	3081893..3082273	-	126	16080066	yteP	BSU30140	-	hypothetical protein
3014	 43.77	0	3082489..3084807	+	772	16080067	ytdP	BSU30150	-	hypothetical protein
3015	 46.05	0	3084848..3086317	-	489	50812280	ytcQ	BSU30160	-	hypothetical protein
3016	 43.90	0	3086370..3087230	-	286	16080069	ytcP	BSU30170	-	hypothetical protein
3017	 44.88	0	3087437..3088042	-	201	16080070	ytbQ	BSU30180	-	hypothetical protein
3018	 45.96	0	3088275..3089462	-	395	16080071	bioI	BSU30190	-	cytochrome P450 enzyme
3019	 45.93	0	3089531..3090538	-	335	16080072	bioB	BSU30200	-	biotin synthase
3020	 44.25	0	3090541..3091236	-	231	16080073	bioD	BSU30210	-	dithiobiotin synthetase
3021	 46.92	0	3091233..3092402	-	389	16080074	bioF	BSU30220	-	8-amino-7-oxononanoate synthase
3022	 45.81	0	3092392..3093738	-	448	16080075	bioA	BSU30230	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
3023	 43.85	0	3093728..3094507	-	259	50812281	bioW	BSU30240	-	6-carboxyhexanoate--CoA ligase
3024	 48.22	+1	3094714..3095613	-	299	16080077	ytaP	BSU30250	-	hypothetical protein
3025	 48.99	+1	3095831..3096865	+	344	16080078	msmR	BSU30260	-	LacI family transcription regulator
3026	 44.96	0	3096899..3098179	+	426	16080079	msmE	BSU30270	-	multiple sugar-binding protein
3027	 45.50	0	3098172..3099083	+	303	16080080	amyD	BSU30280	-	sugar transport
3028	 44.52	0	3099080..3099910	+	276	16080081	amyC	BSU30290	-	maltose transport protein
3029	 44.96	0	3099930..3101228	+	432	16080082	melA	BSU30300	-	alpha-D-galactoside galactohydrolase
3030	 45.41	0	3101250..3101456	-	68	16080083	ytwF	BSU30310	-	hypothetical protein
3031	 47.74	0	3101678..3104092	-	804	16080084	leuS	BSU30320	-	leucyl-tRNA synthetase
3032	 46.43	0	3104519..3104854	-	111	16080085	ytvB	BSU30330	-	hypothetical protein
3033	 40.33	0	3105259..3106044	+	261	16080086	ytvA	BSU30340	-	hypothetical protein
3034	 45.23	0	3106281..3107474	-	397	16080087	yttB	BSU30350	-	hypothetical protein
3035	 40.89	0	3107669..3108409	+	246	16080088	yttA	BSU30360	-	hypothetical protein
3036	 41.37	0	3108446..3110386	-	646	16080089	ytsD	BSU30370	-	hypothetical protein
3037	 43.70	0	3110376..3111137	-	253	16080090	ytsC	BSU30380	-	hypothetical protein
3038	 42.39	0	3111239..3112243	-	334	16080091	ytsB	BSU30390	-	hypothetical protein
3039	 45.40	0	3112236..3112931	-	231	16080092	ytsA	BSU30400	-	hypothetical protein
3040	 40.43	0	3113028..3114338	-	436	16080093	ytrF	BSU30410	-	hypothetical protein
3041	 46.12	0	3114328..3115023	-	231	16080094	ytrE	BSU30420	-	hypothetical protein
3042	 40.59	0	3115038..3116015	-	325	16080095	ytrD	BSU30430	-	hypothetical protein
3043	 40.02	0	3116045..3117031	-	328	16080096	ytrC	BSU30440	-	hypothetical protein
3044	 44.14	0	3117025..3117903	-	292	16080097	ytrB	BSU30450	-	hypothetical protein
3045	 42.75	0	3117896..3118288	-	130	16080098	ytrA	BSU30460	-	hypothetical protein
3046	 40.29	0	3118614..3118886	-	90	16080099	ytzC	BSU30470	-	hypothetical protein
3047	 47.47	0	3119048..3120016	+	322	16080100	ytqA	BSU30480	-	hypothetical protein
3048	 47.18	0	3120013..3120597	+	194	16080101	ytqB	BSU30490	-	hypothetical protein
3049	 43.93	0	3120587..3121690	-	367	16080102	ytpB	BSU30500	-	hypothetical protein
3050	 43.97	0	3121711..3122490	-	259	16080103	ytpA	BSU30510	-	hypothetical protein
3051	 46.51	0	3122539..3123054	+	171	16080104	ytoA	BSU30520	-	hypothetical protein
3052	 45.04	0	3123299..3124690	-	463	16080105	ytnA	BSU30530	-	hypothetical protein
3053	 43.92	0	3124826..3126724	-	632	16080106	asnB	BSU30540	-	asparagine synthetase
3054	 45.97	0	3126874..3128076	-	400	16080107	metK	BSU30550	-	S-adenosylmethionine synthetase
3055	 47.16	0	3128579..3130162	+	527	16080108	pckA	BSU30560	-	phosphoenolpyruvate carboxykinase
3056	 40.74	0	3130201..3130443	-	80	16080109	ytmB	BSU30570	-	hypothetical protein
3057	 47.67	0	3130495..3131268	-	257	16080110	ytmA	BSU30580	-	hypothetical protein
3058	 46.96	0	3131419..3132108	+	229	16080111	ytlA	BSU30590	-	hypothetical protein
3059	 39.94	0	3132105..3132422	+	105	16080112	ytlB	BSU30600	-	hypothetical protein
3060	 44.70	0	3132435..3133217	+	260	16080113	ytlC	BSU30610	-	hypothetical protein
3061	 46.25	0	3133192..3134004	+	270	16080114	ytlD	BSU30620	-	hypothetical protein
3062	 42.98	0	3134031..3134507	-	158	16080115	ytkD	BSU30630	-	hypothetical protein
3063	 37.78	-1	3134716..3135120	-	134	16080116	ytkC	BSU30640	-	hypothetical protein
3064	 39.95	0	3135286..3135723	-	145	16080117	dps	BSU30650	-	DNA-protecting protein
3065	 43.84	0	3135986..3136423	-	145	16080118	ytkA	BSU30660	-	hypothetical protein
3066	 43.46	0	3136543..3137016	-	157	16080119	luxS	BSU30670	-	S-ribosylhomocysteinase
3067	 45.61	0	3137145..3137372	+	75	16080120	ytjA	BSU30680	-	hypothetical protein
3068	 41.13	0	3137369..3137932	-	187	16080121	ytiB	BSU30690	-	hypothetical protein
3069	 41.77	0	3138026..3138274	-	82	16080122	rpmE2	BSU30700	-	50S ribosomal protein L31 type B
3070	 47.46	0	3138494..3139810	+	438	16080123	ythA	BSU30710	-	hypothetical protein
3071	 43.71	0	3139854..3140894	+	346	16080124	ythB	BSU30720	-	hypothetical protein
3072	 42.26	0	3140943..3141110	+	55	16080125	ythC	BSU30730	-	hypothetical protein
3073	 47.64	0	3141125..3142012	-	295	16080126	mntD	BSU30740	-	manganese ABC transporter
3074	 47.71	0	3142002..3143309	-	435	16080127	mntC	BSU30750	-	manganese ABC transporter membrane protein
3075	 48.07	+1	3143315..3144067	-	250	16080128	mntB	BSU30760	-	manganese ABC transporter ATP-binding protein
3076	 45.82	0	3144086..3145006	-	306	16080129	mntA	BSU30770	-	manganese ABC transporter membrane protein
3077	 44.09	0	3145286..3146401	-	371	16080130	menC	BSU30780	-	O-succinylbenzoate-CoA synthase
3078	 47.78	0	3146398..3147858	-	486	16080131	menE	BSU30790	-	O-succinylbenzoic acid--CoA ligase
3079	 47.43	0	3147949..3148764	-	271	16080132	menB	BSU30800	-	naphthoate synthase
3080	 48.12	+1	3148799..3149623	-	274	16080133	ytxM	BSU30810	-	hypothetical protein
3081	 48.94	+1	3149611..3151353	-	580	16080134	menD	BSU30820	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
3082	 46.33	0	3151350..3152765	-	471	16080135	menF	BSU30830	-	menaquinone-specific isochorismate synthase
3083	 44.86	0	3153054..3153773	+	239	50812282	yteA	BSU30840	-	hypothetical protein
3084	 44.69	0	3153782..3154600	-	272	16080137	ytdA	BSU30850	-	hypothetical protein
3085	 46.62	0	3154772..3156058	+	428	16080138	ytcA	BSU30860	-	hypothetical protein
3086	 46.79	0	3156055..3157005	+	316	16080139	ytcB	BSU30870	-	hypothetical protein
3087	 44.85	0	3157008..3158231	+	407	16080140	ytcC	BSU30880	-	hypothetical protein
3088	 44.68	0	3158305..3158736	-	143	16080141	ytxO	BSU30890	-	hypothetical protein
3089	 43.09	0	3158738..3159793	-	351	16080142	cotS	BSU30900	-	spore coat protein
3090	 46.30	0	3159808..3160941	-	377	16080143	cotSA	BSU30910	-	spore coat protein
3091	 43.58	0	3161131..3162204	+	357	16080144	ytaA	BSU30920	-	hypothetical protein
3092	 42.95	0	3162284..3162751	+	155	16080145	ytaB	BSU30930	-	hypothetical protein
3093	 44.56	0	3162782..3165178	-	798	16080146	glgP	BSU30940	-	glycogen phosphorylase
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.