IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.31   STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.12	0	410..1750	+	446	16077069	dnaA	BSU00010	-	chromosomal replication initiation protein
2	 39.93	0	1939..3075	+	378	16077070	dnaN	BSU00020	-	DNA polymerase III subunit beta
3	 43.52	0	3206..3421	+	71	16077071	yaaA	BSU00030	-	hypothetical protein
4	 45.55	0	3437..4549	+	370	16077072	recF	BSU00040	-	recombination protein F
5	 38.99	0	4567..4725	+	52	16077073	yaaB	BSU00050	-	hypothetical protein
6	 45.02	0	4866..6782	+	638	16077074	gyrB	BSU00060	-	DNA gyrase subunit B
7	 44.40	0	6993..9458	+	821	16077075	gyrA	BSU00070	-	DNA gyrase subunit A
8	 34.60	-1	14845..15792	-	315	16077076	yaaC	BSU00080	-	hypothetical protein
9	 43.49	0	15913..17379	+	488	16077077	guaB	BSU00090	-	inositol-5-monophosphate dehydrogenase
10	 40.54	0	17532..18863	+	443	16077078	dacA	BSU00100	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
11	 45.99	0	19060..19944	+	294	16077079	yaaD	BSU00110	-	pyridoxine biosynthesis protein
12	 46.36	0	19966..20556	+	196	16077080	yaaE	BSU00120	-	glutamine amidotransferase subunit PdxT
13	 44.44	0	20878..22155	+	425	16077081	serS	BSU00130	-	seryl-tRNA synthetase
14	 37.61	-1	22494..23147	-	217	16077082	dck	BSU00140	-	deoxyadenosine/deoxycytidine kinase
15	 40.54	0	23144..23767	-	207	16077083	dgk	BSU00150	-	deoxyguanosine kinase
16	 45.95	0	23866..25149	-	427	16077084	yaaH	BSU00160	-	hypothetical protein
17	 37.73	-1	25219..25764	-	181	16077085	yaaI	BSU00170	-	hypothetical protein
18	 45.47	0	25850..26335	+	161	16077086	yaaJ	BSU00180	-	hypothetical protein
19	 43.62	0	26812..28503	+	563	16077087	dnaX	BSU00190	-	DNA polymerase III subunits gamma and tau
20	 39.51	0	28527..28850	+	107	16077088	yaaK	BSU00200	-	hypothetical protein
21	 43.22	0	28865..29461	+	198	16077089	recR	BSU00210	-	recombination protein RecR
22	 37.78	-1	29479..29703	+	74	16077090	yaaL	BSU00220	-	hypothetical protein
23	 38.64	-1	29770..30033	+	87	16077091	bofA	BSU00230	-	inhibition of the pro-sigma-K processing machinery
24	 32.31	-2	35529..35723	+	64	16077092	csfB	BSU00240	-	hypothetical protein
25	 36.91	-1	35843..36457	+	204	16077093	xpaC	BSU00250	-	hydrolysis of 5-bromo 4-chloroindolyl phosphate (X-phos)
26	 40.31	0	36476..37636	+	386	16077094	yaaN	BSU00260	-	hypothetical protein
27	 42.97	0	37718..39160	+	480	16077095	yaaO	BSU00270	-	hypothetical protein
28	 41.31	0	39157..39795	+	212	16077096	tdk	BSU00280	-	thymidylate kinase
29	 41.82	0	39869..40198	+	109	16077097	yaaQ	BSU00290	-	hypothetical protein
30	 36.96	-1	40211..40651	+	146	16077098	yaaR	BSU00300	-	hypothetical protein
31	 41.72	0	40663..41652	+	329	16077099	holB	BSU00310	-	DNA polymerase III subunit delta'
32	 42.87	0	41655..42482	+	275	16077100	yaaT	BSU00320	-	hypothetical protein
33	 37.78	-1	42497..42856	+	119	16077101	yabA	BSU00330	-	DNA replication intiation control protein YabA
34	 42.34	0	42915..43658	+	247	16077102	yabB	BSU00340	-	hypothetical protein
35	 40.33	0	43645..43944	+	99	16077103	yazA	BSU00350	-	GIY-YIG nuclease superfamily protein
36	 43.23	0	43919..44797	+	292	16077104	yabC	BSU00360	-	hypothetical protein
37	 35.40	-1	44846..45136	-	96	16077105	abrB	BSU00370	-	transcriptional regulator
38	 42.11	0	45631..47625	+	664	16077106	metG	BSU00380	-	methionyl-tRNA synthetase
39	 42.32	0	47704..48471	+	255	16077107	yabD	BSU00390	-	hypothetical protein
40	 41.55	0	48627..49940	+	437	16077108	yabE	BSU00400	-	hypothetical protein
41	 46.17	0	50085..50645	+	186	16077109	rnmV	BSU00410	-	ribonuclease M5
42	 43.46	0	50638..51516	+	292	16077110	ksgA	BSU00420	-	dimethyladenosine transferase
43	 42.27	0	51678..52550	+	290	16077111	yabG	BSU00430	-	hypothetical protein
44	 42.15	0	52761..53021	+	86	16077112	veg	BSU00440	-	hypothetical protein
45	 45.70	0	53181..53366	+	61	16077113	sspF	BSU00450	-	small acid-soluble spore protein (alpha/beta-type SASP)
46	 48.05	+1	53514..54383	+	289	16077114	ispE	BSU00460	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
47	 42.66	0	54439..55296	+	285	16077115	purR	BSU00470	-	purine operon repressor
48	 44.18	0	55293..55670	+	125	16077116	yabJ	BSU00480	-	hypothetical protein
49	 44.90	0	55864..56157	+	97	16077117	spoVG	BSU00490	-	regulatory protein SpoVG
50	 43.18	0	56350..57720	+	456	16077118	gcaD	BSU00500	-	UDP-N-acetylglucosamine pyrophosphorylase
51	 42.66	0	57743..58696	+	317	16077119	prs	BSU00510	-	ribose-phosphate pyrophosphokinase
52	 46.18	0	58781..59395	+	204	16077120	ctc	BSU00520	-	50S ribosomal protein L25/general stress protein Ctc
53	 43.56	0	59502..60068	+	188	16077121	spoVC	BSU00530	-	peptidyl-tRNA hydrolase
54	 38.53	-1	60128..60358	+	76	16077122	yabK	BSU00540	-	hypothetical protein
55	 45.16	0	60428..63961	+	1177	16077123	mfd	BSU00550	-	transcription-repair coupling factor
56	 45.07	0	64097..64633	+	178	16077124	spoVT	BSU00560	-	transcriptional regulator
57	 44.47	0	64815..66413	+	532	16077125	yabM	BSU00570	-	hypothetical protein
58	 44.83	0	66403..67872	+	489	16077126	yabN	BSU00580	-	hypothetical protein
59	 41.38	0	67875..68135	+	86	16077127	yabO	BSU00590	-	hypothetical protein
60	 39.27	0	68214..68516	+	100	16077128	yabP	BSU00600	-	hypothetical protein
61	 38.99	0	68513..69148	+	211	16077129	yabQ	BSU00610	-	hypothetical protein
62	 39.95	0	69166..69543	+	125	16077130	divIC	BSU00620	-	cell-division initiation protein
63	 39.79	0	69624..70010	+	128	16077131	yabR	BSU00630	-	hypothetical protein
64	 43.76	0	70536..73019	+	827	16077132	spoIIE	BSU00640	-	serine phosphatase
65	 46.21	0	73104..73841	+	245	16077133	yabS	BSU00650	-	hypothetical protein
66	 43.85	0	73807..74823	+	338	50812174	yabT	BSU00660	-	hypothetical protein
67	 44.05	0	74927..76345	+	472	16077135	yacA	BSU00670	-	hypothetical protein
68	 39.23	0	76342..76884	+	180	16077136	hprT	BSU00680	-	hypoxanthine-guanine phosphoribosyltransferase
69	 45.98	0	76982..78895	+	637	16077137	ftsH	BSU00690	-	cell-division protein and general stress protein (class III heat-shock)
70	 43.45	0	79090..79791	+	233	16077138	yacB	BSU00700	-	hypothetical protein
71	 44.41	0	79877..80752	+	291	16077139	hslO	BSU00710	-	Hsp33-like chaperonin
72	 40.38	0	80799..81692	+	297	16077140	yacD	BSU00720	-	hypothetical protein
73	 45.52	0	81768..82694	+	308	16077141	cysK	BSU00730	-	cysteine synthetase A
74	 42.75	0	82861..84273	+	470	16077142	pabB	BSU00740	-	para-aminobenzoate synthase component I
75	 45.30	0	84287..84871	+	194	16077143	pabA	BSU00750	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
76	 43.88	0	84871..85752	+	293	16077144	pabC	BSU00760	-	4-amino-4-deoxychorismate lyase
77	 47.55	0	85734..86591	+	285	16077145	sul	BSU00770	-	dihydropteroate synthase
78	 43.53	0	86584..86946	+	120	16077146	folB	BSU00780	-	dihydroneopterin aldolase
79	 43.06	0	86943..87446	+	167	16077147	folK	BSU00790	-	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase
80	 42.86	0	87398..87607	+	69	16077148	yazB	BSU00800	-	hypothetical protein
81	 44.81	0	87631..88632	+	333	16077149	yacF	BSU00810	-	hypothetical protein
82	 43.33	0	88724..90223	+	499	16077150	lysS	BSU00820	-	lysyl-tRNA synthetase
83	 33.98	-2	101446..101910	+	154	16077151	ctsR	BSU00830	-	transcriptional regulator
84	 37.10	-1	101924..102481	+	185	16077152	mcsA	BSU00840	-	modulation of CtsR repression
85	 41.85	0	102481..103572	+	363	16077153	mcsB	BSU00850	-	ATP:guanido phosphotransferase
86	 43.53	0	103569..106001	+	810	16077154	clpC	BSU00860	-	class III stress response-related ATPase
87	 45.03	0	106093..107469	+	458	16077155	radA	BSU00870	-	DNA repair protein RadA
88	 40.35	0	107473..108555	+	360	16077156	yacK	BSU00880	-	DNA integrity scanning protein DisA
89	 40.24	0	108671..109771	+	366	16077157	yacL	BSU00890	-	hypothetical protein
90	 47.93	+1	109786..110484	+	232	16077158	ispD	BSU00900	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
91	 46.54	0	110477..110953	+	158	16077159	ispF	BSU00910	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
92	 43.18	0	111044..112495	+	483	16077160	gltX	BSU00920	-	glutamyl-tRNA synthetase
93	 43.58	0	112797..113450	+	217	16077161	cysE	BSU00930	-	serine acetyltransferase
94	 43.47	0	113447..114847	+	466	16077162	cysS	BSU00940	-	cysteinyl-tRNA synthetase
95	 42.13	0	114851..115282	+	143	16077163	yazC	BSU00950	-	hypothetical protein
96	 47.47	0	115266..116015	+	249	16077164	yacO	BSU00960	-	hypothetical protein
97	 44.44	0	116022..116534	+	170	16077165	yacP	BSU00970	-	hypothetical protein
98	 40.49	0	116597..117253	+	218	16077166	sigH	BSU00980	-	RNA polymerase factor sigma-70
99	 38.67	-1	117346..117495	+	49	16077167	rpmG	BSU00990	-	50S ribosomal protein L33
100	 31.11	-2	117529..117708	+	59	16077168	secE	BSU01000	-	preprotein translocase subunit SecE
43.31	MEAN

4.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.