IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
237	 43.64	0	257779..258486	+	235	16077306	ybgA	BSU02370	-	hypothetical protein
238	 44.57	0	258520..258795	+	91	16077307	ybgB	BSU02380	-	hypothetical protein
239	 48.27	+1	259004..260074	+	356	16077308	ybgE	BSU02390	-	branched-chain amino acid aminotransferase
240	 49.04	+1	260111..261523	-	470	16077309	ybgF	BSU02400	-	hypothetical protein
241	 50.53	+1	261644..262591	-	315	16077310	mmuM	BSU02410	-	homocysteine methyltransferase
242	 47.13	0	262720..264111	-	463	16077311	ybgH	BSU02420	-	hypothetical protein
243	 49.39	+1	264181..265164	-	327	16077312	ybgJ	BSU02430	-	glutaminase
244	 45.02	0	265536..266699	+	387	16077313	ycbA	BSU02440	-	hypothetical protein
245	 46.67	0	266710..267654	+	314	16077314	ycbB	BSU02450	-	hypothetical protein
246	 48.54	+1	267881..268807	+	308	16077315	ycbC	BSU02460	-	5-dehydro-4-deoxyglucarate dehydratase
247	 51.40	+1	268837..270303	+	488	16077316	ycbD	BSU02470	-	hypothetical protein
248	 49.49	+1	270387..271754	+	455	16077317	ycbE	BSU02480	-	hypothetical protein
249	 52.49	+1	271791..273158	+	455	16077318	ycbF	BSU02490	-	hypothetical protein
250	 45.87	0	273228..273929	+	233	16077319	ycbG	BSU02500	-	hypothetical protein
251	 52.71	+2	274020..275552	+	510	16077320	ycbH	BSU02510	-	hypothetical protein
252	 47.77	0	275829..276749	+	306	16077321	ycbJ	BSU02520	-	hypothetical protein
253	 43.83	0	277151..277312	+	53	16077322	yczA	BSU02530	-	hypothetical protein
254	 47.60	0	277333..278271	+	312	16077323	ycbK	BSU02540	-	hypothetical protein
255	 45.52	0	278368..279048	+	226	16077324	ycbL	BSU02550	-	hypothetical protein
256	 46.96	0	279050..279526	+	158	16077325	ycbM	BSU02560	-	hypothetical protein
257	 44.76	0	279682..280521	+	279	16077326	ycbN	BSU02570	-	hypothetical protein
258	 46.34	0	280640..281254	+	204	50812177	ycbO	BSU02580	-	hypothetical protein
259	 42.89	0	281309..281695	-	128	16077328	ycbP	BSU02590	-	hypothetical protein
260	 52.21	+1	282009..282437	+	142	16077329	cwlJ	BSU02600	-	cell wall hydrolase
261	 42.62	0	282543..283274	+	243	16077330	ycbR	BSU02610	-	hypothetical protein
262	 49.13	+1	283553..285223	+	556	16077331	phoD	BSU02620	-	phosphodiesterase/alkaline phosphatase D
263	 46.95	0	285318..285530	+	70	16077332	tatAD	BSU02630	-	component of the twin-arginine pre-protein translocation pathway
264	 47.02	0	285591..286328	+	245	16077333	tatCD	BSU02640	-	component of the twin-arginine pre-protein translocation pathway
265	 50.00	+1	286325..286972	-	215	16077334	pcp	BSU02650	-	pyrrolidone-carboxylate peptidase
266	 49.60	+1	287051..288163	+	370	16077335	ycbU	BSU02660	-	hypothetical protein
267	 47.36	0	288205..289644	-	479	16077336	lmrB	BSU02670	-	drug-export protein
268	 51.15	+1	289684..290250	-	188	16077337	lmrA	BSU02680	-	transcriptional regulator
269	 44.59	0	290467..291594	+	375	16077338	yccC	BSU02690	-	hypothetical protein
270	 45.07	0	291757..292395	+	212	16077339	lip	BSU02700	-	lipase
271	 47.14	0	292433..292816	-	127	16077340	yczC	BSU02710	-	hypothetical protein
272	 46.61	0	293051..294127	+	358	16077341	yccF	BSU02720	-	hypothetical protein
273	 47.23	0	294167..295123	-	318	16077342	yccG	BSU02730	-	hypothetical protein
274	 43.02	0	295136..295837	-	233	16077343	yccH	BSU02740	-	hypothetical protein
275	 47.10	0	295981..296721	+	246	16077344	natA	BSU02750	-	Na+ ABC transporter ATP-binding protein
276	 44.88	0	296722..297882	+	386	16077345	natB	BSU02760	-	Na+ ABC transporter membrane protein
277	 46.30	0	298018..298950	+	310	16077346	yccK	BSU02770	-	hypothetical protein
278	 39.91	0	298990..300054	-	354	16077347	ycdA	BSU02780	-	hypothetical protein
279	 47.64	0	300382..301800	+	472	16077348	ycdB	BSU02790	-	hypothetical protein
280	 45.52	0	301987..303348	+	453	16077349	ycdC	BSU02800	-	hypothetical protein
281	 42.66	0	303356..303859	-	167	16077350	ycdD	BSU02810	-	hypothetical protein
282	 43.40	0	303982..305103	+	373	16077351	rapJ	BSU02820	-	response regulator aspartate phosphatase
283	 47.75	0	305210..305986	+	258	16077352	ycdF	BSU02830	-	hypothetical protein
284	 45.91	0	306011..307696	+	561	16077353	ycdG	BSU02840	-	hypothetical protein
285	 42.29	0	307884..308843	+	319	16077354	ycdH	BSU02850	-	hypothetical protein
286	 44.11	0	308899..309594	+	231	16077355	ycdI	BSU02860	-	hypothetical protein
287	 45.55	0	309552..310394	+	280	16077356	yceA	BSU02870	-	hypothetical protein
288	 50.42	+1	310432..311373	-	313	16077357	yceB	BSU02880	-	hypothetical protein
289	 45.50	0	311711..312310	+	199	16077358	yceC	BSU02890	-	hypothetical protein
290	 45.88	0	312332..312913	+	193	16077359	yceD	BSU02900	-	hypothetical protein
291	 47.67	0	312948..313526	+	192	16077360	yceE	BSU02910	-	hypothetical protein
292	 44.44	0	313577..314350	+	257	16077361	yceF	BSU02920	-	hypothetical protein
293	 45.35	0	314435..316048	+	537	16077362	yceG	BSU02930	-	hypothetical protein
294	 45.79	0	316064..317155	+	363	16077363	yceH	BSU02940	-	hypothetical protein
295	 49.79	+1	317277..318479	+	400	16077364	yceI	BSU02950	-	hypothetical protein
296	 48.59	+1	318732..319904	-	390	16077365	yceJ	BSU02960	-	hypothetical protein
297	 41.58	0	319973..320275	-	100	16077366	yceK	BSU02970	-	hypothetical protein
298	 43.75	0	320565..321821	+	418	16077367	opuAA	BSU02980	-	glycine betaine ABC transporter ATP-binding protein
299	 46.05	0	321823..322671	+	282	16077368	opuAB	BSU02990	-	glycine betaine ABC transporter (permease)
300	 46.26	0	322671..323552	+	293	16077369	opuAC	BSU03000	-	glycine betaine ABC transporter (glycine betaine-binding protein)
301	 51.11	+1	323571..324740	-	389	16077370	amhX	BSU03010	-	amidohydrolase
302	 47.61	0	325133..326323	+	396	16077371	ycgA	BSU03020	-	hypothetical protein
303	 42.27	0	326439..327020	+	193	16077372	ycgB	BSU03030	-	hypothetical protein
304	 44.53	0	327169..329151	+	660	16077373	amyE	BSU03040	-	alpha-amylase
305	 45.13	0	329328..330293	+	321	16077374	ldh	BSU03050	-	L-lactate dehydrogenase
306	 49.94	+1	330325..331950	+	541	16077375	lctP	BSU03060	-	L-lactate permease
307	 47.85	0	332258..333538	-	426	16077376	mdr	BSU03070	-	multidrug-efflux transporter
308	 48.72	+1	333651..334118	+	155	16077377	ycgE	BSU03080	-	hypothetical protein
309	 45.56	0	334192..334821	+	209	16077378	ycgF	BSU03090	-	hypothetical protein
310	 47.90	0	334891..335652	+	253	16077379	ycgG	BSU03100	-	hypothetical protein
311	 46.30	0	335684..336817	-	377	16077380	ycgH	BSU03110	-	hypothetical protein
312	 46.94	0	336984..337718	+	244	50812178	ycgI	BSU03120	-	hypothetical protein
313	 48.11	+1	337848..338666	+	272	16077382	nadE	BSU03130	-	NAD synthetase
314	 47.14	0	338716..339309	-	197	16077383	tmrB	BSU03140	-	ATP-binding membrane protein
315	 40.46	0	339585..340145	+	186	16077384	aroK	BSU03150	-	shikimate kinase
316	 48.62	+1	340173..340859	-	228	16077385	ycgJ	BSU03160	-	hypothetical protein
317	 48.72	+1	341052..342026	+	324	16077386	ycgK	BSU03170	-	hypothetical protein
318	 48.59	+1	342098..343054	+	318	16077387	cah	BSU03180	-	cephalosporin C deacetylase
319	 43.93	0	343138..343920	+	260	16077388	ycgL	BSU03190	-	hypothetical protein
320	 43.42	0	344111..345022	+	303	16077389	ycgM	BSU03200	-	hypothetical protein
321	 46.45	0	345039..346586	+	515	16077390	ycgN	BSU03210	-	1-pyrroline-5-carboxylate dehydrogenase
322	 48.67	+1	346782..348131	+	449	16077391	ycgO	BSU03220	-	hypothetical protein
323	 39.81	0	348284..349519	+	411	16077392	ycgP	BSU03230	-	hypothetical protein
324	 41.14	0	349556..350413	-	285	16077393	ycgQ	BSU03240	-	hypothetical protein
325	 45.76	0	350418..351302	-	294	16077394	ycgR	BSU03250	-	hypothetical protein
326	 46.43	0	351402..352256	-	284	16077395	ycgS	BSU03260	-	hypothetical protein
327	 50.25	+1	352418..353428	+	336	16077396	ycgT	BSU03270	-	hypothetical protein
328	 49.38	+1	353460..354911	-	483	16077397	nasF	BSU03280	-	uroporphyrin-III C-methyltransferase
329	 44.55	0	354972..355292	-	106	16077398	nasE	BSU03290	-	assimilatory nitrite reductase (subunit)
330	 49.09	+1	355324..357741	-	805	16077399	nasD	BSU03300	-	assimilatory nitrite reductase (subunit)
331	 48.48	+1	357863..359995	-	710	16077400	nasC	BSU03310	-	assimilatory nitrate reductase (catalytic subunit)
332	 49.29	+1	360002..362314	-	770	16077401	nasB	BSU03320	-	assimilatory nitrate reductase (electron transfer subunit)
333	 50.63	+1	362494..363759	+	421	16077402	nasA	BSU03330	-	nitrate transporter
334	 46.19	0	363815..364732	+	305	16077403	yciA	BSU03340	-	putative GTP cyclohydrolase
335	 41.54	0	364729..365313	+	194	16077404	yciB	BSU03350	-	hypothetical protein
336	 47.07	0	365622..366815	+	397	16077405	yciC	BSU03360	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.