IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2705	 43.35	0	2761132..2761620	-	162	16079760	levE	BSU27060	-	phosphotransferase system (PTS) fructose-specific enzyme IIB component
2706	 40.82	0	2761620..2762060	-	146	16079761	levD	BSU27070	-	phosphotransferase system (PTS) fructose-specific enzyme IIA component
2707	 40.72	0	2762250..2765066	-	938	16079762	levR	BSU27080	-	NifA/NtrC family transcriptional regulator
2708	 42.17	0	2765783..2767162	+	459	16079763	aapA	BSU27090	-	amino acid permease
2709	 37.28	-1	2767269..2767901	-	210	16079764	yrhP	BSU27100	-	hypothetical protein
2710	 40.22	0	2768054..2768881	+	275	16079765	yrhO	BSU27110	-	hypothetical protein
2711	 37.52	-1	2769077..2769577	+	166	16079766	sigV	BSU27120	-	RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V)
2712	 38.34	-1	2769577..2770434	+	285	16079767	yrhM	BSU27130	-	hypothetical protein
2713	 43.10	0	2770545..2772449	+	634	16079768	yrhL	BSU27140	-	hypothetical protein
2714	 37.80	-1	2772583..2772873	+	96	16079769	yrhK	BSU27150	-	hypothetical protein
2715	 46.60	0	2773117..2776281	-	1054	16079770	yrhJ	BSU27160	-	hypothetical protein
2716	 39.66	0	2776297..2776881	-	194	16079771	yrhI	BSU27170	-	hypothetical protein
2717	 36.65	-1	2777104..2777646	-	180	16079772	yrhH	BSU27180	-	hypothetical protein
2718	 32.00	-2	2778150..2778299	-	49	16079773	yrzI	BSU27190	-	hypothetical protein
2719	 45.82	0	2778689..2779489	-	266	16079774	yrhG	BSU27200	-	hypothetical protein
2720	 39.02	0	2779752..2780120	-	122	16079775	yrhF	BSU27210	-	hypothetical protein
2721	 46.59	0	2780436..2783378	+	980	16079776	yrhE	BSU27220	-	hypothetical protein
2722	 44.93	0	2783397..2783879	+	160	16079777	yrhD	BSU27230	-	hypothetical protein
2723	 38.96	0	2783915..2784145	-	76	16079778	yrhC	BSU27240	-	hypothetical protein
2724	 46.67	0	2784228..2785367	-	379	16079779	yrhB	BSU27250	-	cystathionine beta-lyase
2725	 46.43	0	2785369..2786292	-	307	16079780	yrhA	BSU27260	-	hypothetical protein
2726	 44.68	0	2786357..2787052	-	231	16079781	mtn	BSU27270	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
2727	 43.93	0	2787073..2787714	-	213	16079782	yrrT	BSU27280	-	hypothetical protein
2728	 37.75	-1	2787907..2788110	+	67	16079783	yrzA	BSU27290	-	hypothetical protein
2729	 42.45	0	2788147..2788848	-	233	16079784	yrrS	BSU27300	-	hypothetical protein
2730	 43.82	0	2788913..2790667	-	584	16079785	yrrR	BSU27310	-	hypothetical protein
2731	 42.83	0	2790721..2791194	-	157	16079786	greA	BSU27320	-	transcription elongation factor GreA
2732	 41.04	0	2791445..2792080	-	211	16079787	udk	BSU27330	-	uridine kinase
2733	 45.55	0	2792087..2793355	-	422	16079788	yrrO	BSU27340	-	hypothetical protein
2734	 43.33	0	2793374..2794303	-	309	16079789	yrrN	BSU27350	-	hypothetical protein
2735	 42.20	0	2794309..2794962	-	217	16079790	yrrM	BSU27360	-	hypothetical protein
2736	 39.89	0	2795114..2796196	-	360	16079791	yrrL	BSU27370	-	hypothetical protein
2737	 38.65	-1	2796327..2796608	-	93	16079792	yrzB	BSU27380	-	hypothetical protein
2738	 42.69	0	2796626..2797042	-	138	16079793	yrrK	BSU27390	-	Holliday junction resolvase-like protein
2739	 40.82	0	2797050..2797316	-	88	50812272	yrzL	BSU27400	-	hypothetical protein
2740	 46.87	0	2797401..2800037	-	878	16079794	alaS	BSU27410	-	alanyl-tRNA synthetase
2741	 45.67	0	2800368..2801429	-	353	16079795	yrrI	BSU27420	-	hypothetical protein
2742	 45.82	0	2801585..2802313	+	242	16079796	glnQ	BSU27430	-	glutamine ABC transporter ATP-binding protein
2743	 41.00	0	2802335..2803156	+	273	16079797	glnH	BSU27440	-	glutamine ABC transporter (glutamine-binding protein)
2744	 45.01	0	2803217..2803867	+	216	16079798	glnM	BSU27450	-	glutamine ABC transporter (integral membrane protein)
2745	 45.21	0	2803884..2804540	+	218	16079799	glnP	BSU27460	-	glutamine ABC transporter (integral membrane protein)
2746	 44.38	0	2804931..2805455	-	174	16079800	yrrD	BSU27470	-	hypothetical protein
2747	 45.85	0	2805513..2807909	-	798	16079801	yrrC	BSU27480	-	hypothetical protein
2748	 45.09	0	2807934..2808554	-	206	16079802	yrrB	BSU27490	-	hypothetical protein
2749	 47.29	0	2808640..2809764	-	374	50812273	trmU	BSU27500	-	tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
2750	 48.16	+1	2809786..2810925	-	379	50812274	yrvO	BSU27510	-	hypothetical protein
2751	 49.11	+1	2811027..2811362	-	111	16079806	yrzC	BSU27520	-	hypothetical protein
2752	 45.97	0	2811562..2812827	+	421	16079807	yrvN	BSU27530	-	recombination factor protein RarA
2753	 44.58	0	2812869..2813633	-	254	50812275	yrvM	BSU27540	-	hypothetical protein
2754	 47.72	0	2813969..2815747	-	592	16079809	aspS	BSU27550	-	aspartyl-tRNA synthetase
2755	 45.10	0	2815761..2817035	-	424	16079810	hisS	BSU27560	-	histidyl-tRNA synthetase
2756	 43.86	0	2817417..2817587	-	56	16079811	yrzK	BSU27570	-	hypothetical protein
2757	 48.23	+1	2817720..2819276	+	518	16079812	yrvJ	BSU27580	-	hypothetical protein
2758	 44.36	0	2819303..2819701	-	132	50812276	yrvI	BSU27590	-	D-tyrosyl-tRNA deacylase
2759	 44.31	0	2819755..2821959	-	734	16079814	relA	BSU27600	-	GTP pyrophosphokinase
2760	 44.05	0	2822127..2822639	-	170	16079815	apt	BSU27610	-	adenine phosphoribosyltransferase
2761	 46.29	0	2822645..2825005	-	786	16079816	yrvE	BSU27620	-	hypothetical protein
2762	 37.65	-1	2825072..2825395	-	107	16079817	yrvD	BSU27630	-	hypothetical protein
2763	 44.18	0	2825471..2825968	-	165	16079818	yrvC	BSU27640	-	hypothetical protein
2764	 43.41	0	2826126..2828339	-	737	16081162	secDF	BSU27650	-	bifunctional preprotein translocase subunit SecD/SecF
2765	 41.08	0	2828378..2828674	-	98	16079819	yrzD	BSU27660	-	hypothetical protein
2766	 47.40	0	2828790..2830346	+	518	16079820	spoVB	BSU27670	-	involved in spore cortex synthesis (stage V sporulation)
2767	 38.81	0	2830350..2831006	-	218	16079821	yrbG	BSU27680	-	hypothetical protein
2768	 43.49	0	2831141..2831593	+	150	16079822	yrzE	BSU27690	-	hypothetical protein
2769	 44.44	0	2831650..2831919	-	89	16079823	yajC	BSU27700	-	preprotein translocase subunit YajC
2770	 47.12	0	2831953..2833098	-	381	16079824	tgt	BSU27710	-	queuine tRNA-ribosyltransferase
2771	 45.77	0	2833125..2834153	-	342	16079825	queA	BSU27720	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2772	 50.15	+1	2834376..2835380	-	334	50812277	ruvB	BSU27730	-	Holliday junction DNA helicase B
2773	 40.76	0	2835391..2835996	-	201	16079826	ruvA	BSU27740	-	Holliday junction DNA helicase motor protein
2774	 46.39	0	2836135..2836647	-	170	16079827	bofC	BSU27750	-	forespore regulator of the sigma-K checkpoint
2775	 46.25	0	2836695..2838002	-	435	16079828	csbX	BSU27760	-	sigma-B-transcribed gene
2776	 45.42	0	2838073..2839098	-	341	16079829	yrbE	BSU27770	-	hypothetical protein
2777	 44.02	0	2839336..2839728	+	130	16079830	yrzF	BSU27780	-	hypothetical protein
2778	 41.44	0	2839761..2839982	+	73	16079831	yrzG	BSU27790	-	hypothetical protein
2779	 44.70	0	2840394..2840525	+	43	16079832	yrzH	BSU27800	-	hypothetical protein
2780	 47.01	0	2840836..2842290	+	484	16079833	yrbD	BSU27810	-	hypothetical protein
2781	 43.98	0	2842331..2843053	-	240	16079834	yrbC	BSU27820	-	hypothetical protein
2782	 43.93	0	2843156..2843674	-	172	16079835	coxA	BSU27830	-	spore cortex protein
2783	 46.74	0	2843900..2845063	-	387	16079836	safA	BSU27840	-	morphogenetic protein associated with SpoVID
2784	 44.63	0	2845180..2846286	-	368	16079837	nadA	BSU27850	-	quinolinate synthetase
2785	 43.45	0	2846273..2847142	-	289	16079838	nadC	BSU27860	-	nicotinate-nucleotide pyrophosphorylase
2786	 46.68	0	2847096..2848691	-	531	16079839	nadB	BSU27870	-	L-aspartate oxidase
2787	 43.94	0	2848794..2849981	+	395	16079840	nifS	BSU27880	-	cysteine desulfurase
2788	 47.49	0	2849941..2850477	+	178	16079841	yrxA	BSU27890	-	hypothetical protein
2789	 43.01	0	2850509..2851366	-	285	16079842	pheA	BSU27900	-	prephenate dehydratase
2790	 38.96	0	2851383..2851826	-	147	16079843	pheB	BSU27910	-	hypothetical protein
2791	 48.41	+1	2851887..2853173	-	428	16079844	obgE	BSU27920	-	GTPase ObgE
2792	 39.90	0	2853207..2853785	-	192	16079845	spo0B	BSU27930	-	sporulation initiation phosphotransferase
2793	 44.91	0	2854106..2854390	-	94	16079846	rpmA	BSU27940	-	50S ribosomal protein L27
2794	 46.31	0	2854403..2854741	-	112	16079847	ysxB	BSU27950	-	hypothetical protein
2795	 40.13	0	2854744..2855052	-	102	16079848	rplU	BSU27960	-	50S ribosomal protein L21
2796	 45.44	0	2855199..2856065	-	288	16079849	spoIVFB	BSU27970	-	membrane metalloprotease
2797	 42.14	0	2856058..2856852	-	264	16079850	spoIVFA	BSU27980	-	inhibition of SpoIVFB (negative regulation) and hypothesised to stabilize the thermolabile spoIVFB product (positive regulation) (stage IV sporulation)
2798	 44.73	0	2857003..2857809	-	268	16079851	minD	BSU27990	-	ATPase activator of MinC
2799	 41.70	0	2857811..2858491	-	226	16079852	minC	BSU28000	-	septum formation inhibitor
2800	 36.61	-1	2858544..2859062	-	172	16079853	mreD	BSU28010	-	cell-shape determining protein
2801	 42.50	0	2859059..2859931	-	290	16079854	mreC	BSU28020	-	cell-shape determining protein
2802	 47.04	0	2859962..2860975	-	337	16079855	mreB	BSU28030	-	cell-shape determining protein
2803	 44.54	0	2861066..2861761	-	231	16079856	radC	BSU28040	-	DNA repair protein RadC
2804	 43.68	0	2861798..2862367	-	189	16079857	maf	BSU28050	-	Maf-like protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.