IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2675	 34.04	-2	2732206..2732769	-	187	16079729	yrdC	BSU26760	-	hypothetical protein
2676	 33.60	-2	2732998..2733369	-	123	16079730	yrdB	BSU26770	-	hypothetical protein
2677	 39.09	0	2734179..2734682	-	167	16079731	yrdA	BSU26780	-	hypothetical protein
2678	 36.26	-1	2734908..2735762	-	284	16079732	aadK	BSU26790	-	aminoglycoside 6-adenylyltransferase
2679	 41.00	0	2736141..2737184	+	347	16079733	yrpB	BSU26800	-	hypothetical protein
2680	 34.71	-1	2737534..2738331	+	265	16079734	yrpC	BSU26810	-	hypothetical protein
2681	 44.63	0	2738712..2739419	+	235	16079735	yrpD	BSU26820	-	hypothetical protein
2682	 38.49	-1	2740583..2741338	-	251	16079736	yrpE	BSU26830	-	hypothetical protein
2683	 38.42	-1	2741470..2742000	-	176	16079737	sigZ	BSU26840	-	RNA polymerase sigma factor SigZ
2684	 45.85	0	2742165..2743115	+	316	16079738	yrpG	BSU26850	-	hypothetical protein
2685	 39.10	0	2743389..2744705	-	438	16079739	yraO	BSU26860	-	hypothetical protein
2686	 37.13	-1	2744820..2745689	-	289	16079740	yraN	BSU26870	-	hypothetical protein
2687	 42.48	0	2745834..2746937	+	367	16079741	yraM	BSU26880	-	hypothetical protein
2688	 44.84	0	2747210..2748043	-	277	16079742	csn	BSU26890	-	chitosanase
2689	 32.58	-2	2748486..2748749	+	87	16079743	yraL	BSU26900	-	hypothetical protein
2690	 46.81	0	2748886..2749575	+	229	16079744	yraK	BSU26910	-	hypothetical protein
2691	 43.80	0	2750108..2750470	-	120	16079745	yraJ	BSU26920	-	hypothetical protein
2692	 45.75	0	2750517..2750951	-	144	16079746	yraI	BSU26930	-	hypothetical protein
2693	 35.14	-1	2751392..2751778	-	128	16079747	yraH	BSU26940	-	hypothetical protein
2694	 42.28	0	2752027..2752272	+	81	16079748	yraG	BSU26950	-	hypothetical protein
2695	 43.63	0	2752290..2752658	+	122	16079749	yraF	BSU26960	-	hypothetical protein
2696	 43.27	0	2752677..2753813	+	378	16079750	adhB	BSU26970	-	alcohol dehydrogenase
2697	 39.39	0	2753832..2754029	+	65	16079751	yraE	BSU26980	-	hypothetical protein
2698	 40.67	0	2754045..2754344	+	99	16079752	yraD	BSU26990	-	hypothetical protein
2699	 41.61	0	2754607..2755029	-	140	16079754	yraB	BSU27000	-	hypothetical protein
2700	 47.52	0	2755537..2756586	+	349	16079755	adhA	BSU27010	-	NADP-dependent alcohol dehydrogenase
2701	 42.75	0	2756717..2757226	+	169	50812271	yraA	BSU27020	-	hypothetical protein
2702	 45.48	0	2757268..2759301	-	677	16079757	sacC	BSU27030	-	levanase
2703	 44.32	0	2759458..2760285	-	275	16079758	levG	BSU27040	-	phosphotransferase system (PTS) fructose-specific enzyme IID component
2704	 45.80	0	2760306..2761115	-	269	16079759	levF	BSU27050	-	phosphotransferase system (PTS) fructose-specific enzyme IIC component
2705	 43.35	0	2761132..2761620	-	162	16079760	levE	BSU27060	-	phosphotransferase system (PTS) fructose-specific enzyme IIB component
2706	 40.82	0	2761620..2762060	-	146	16079761	levD	BSU27070	-	phosphotransferase system (PTS) fructose-specific enzyme IIA component
2707	 40.72	0	2762250..2765066	-	938	16079762	levR	BSU27080	-	NifA/NtrC family transcriptional regulator
2708	 42.17	0	2765783..2767162	+	459	16079763	aapA	BSU27090	-	amino acid permease
2709	 37.28	-1	2767269..2767901	-	210	16079764	yrhP	BSU27100	-	hypothetical protein
2710	 40.22	0	2768054..2768881	+	275	16079765	yrhO	BSU27110	-	hypothetical protein
2711	 37.52	-1	2769077..2769577	+	166	16079766	sigV	BSU27120	-	RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V)
2712	 38.34	-1	2769577..2770434	+	285	16079767	yrhM	BSU27130	-	hypothetical protein
2713	 43.10	0	2770545..2772449	+	634	16079768	yrhL	BSU27140	-	hypothetical protein
2714	 37.80	-1	2772583..2772873	+	96	16079769	yrhK	BSU27150	-	hypothetical protein
2715	 46.60	0	2773117..2776281	-	1054	16079770	yrhJ	BSU27160	-	hypothetical protein
2716	 39.66	0	2776297..2776881	-	194	16079771	yrhI	BSU27170	-	hypothetical protein
2717	 36.65	-1	2777104..2777646	-	180	16079772	yrhH	BSU27180	-	hypothetical protein
2718	 32.00	-2	2778150..2778299	-	49	16079773	yrzI	BSU27190	-	hypothetical protein
2719	 45.82	0	2778689..2779489	-	266	16079774	yrhG	BSU27200	-	hypothetical protein
2720	 39.02	0	2779752..2780120	-	122	16079775	yrhF	BSU27210	-	hypothetical protein
2721	 46.59	0	2780436..2783378	+	980	16079776	yrhE	BSU27220	-	hypothetical protein
2722	 44.93	0	2783397..2783879	+	160	16079777	yrhD	BSU27230	-	hypothetical protein
2723	 38.96	0	2783915..2784145	-	76	16079778	yrhC	BSU27240	-	hypothetical protein
2724	 46.67	0	2784228..2785367	-	379	16079779	yrhB	BSU27250	-	cystathionine beta-lyase
2725	 46.43	0	2785369..2786292	-	307	16079780	yrhA	BSU27260	-	hypothetical protein
2726	 44.68	0	2786357..2787052	-	231	16079781	mtn	BSU27270	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
2727	 43.93	0	2787073..2787714	-	213	16079782	yrrT	BSU27280	-	hypothetical protein
2728	 37.75	-1	2787907..2788110	+	67	16079783	yrzA	BSU27290	-	hypothetical protein
2729	 42.45	0	2788147..2788848	-	233	16079784	yrrS	BSU27300	-	hypothetical protein
2730	 43.82	0	2788913..2790667	-	584	16079785	yrrR	BSU27310	-	hypothetical protein
2731	 42.83	0	2790721..2791194	-	157	16079786	greA	BSU27320	-	transcription elongation factor GreA
2732	 41.04	0	2791445..2792080	-	211	16079787	udk	BSU27330	-	uridine kinase
2733	 45.55	0	2792087..2793355	-	422	16079788	yrrO	BSU27340	-	hypothetical protein
2734	 43.33	0	2793374..2794303	-	309	16079789	yrrN	BSU27350	-	hypothetical protein
2735	 42.20	0	2794309..2794962	-	217	16079790	yrrM	BSU27360	-	hypothetical protein
2736	 39.89	0	2795114..2796196	-	360	16079791	yrrL	BSU27370	-	hypothetical protein
2737	 38.65	-1	2796327..2796608	-	93	16079792	yrzB	BSU27380	-	hypothetical protein
2738	 42.69	0	2796626..2797042	-	138	16079793	yrrK	BSU27390	-	Holliday junction resolvase-like protein
2739	 40.82	0	2797050..2797316	-	88	50812272	yrzL	BSU27400	-	hypothetical protein
2740	 46.87	0	2797401..2800037	-	878	16079794	alaS	BSU27410	-	alanyl-tRNA synthetase
2741	 45.67	0	2800368..2801429	-	353	16079795	yrrI	BSU27420	-	hypothetical protein
2742	 45.82	0	2801585..2802313	+	242	16079796	glnQ	BSU27430	-	glutamine ABC transporter ATP-binding protein
2743	 41.00	0	2802335..2803156	+	273	16079797	glnH	BSU27440	-	glutamine ABC transporter (glutamine-binding protein)
2744	 45.01	0	2803217..2803867	+	216	16079798	glnM	BSU27450	-	glutamine ABC transporter (integral membrane protein)
2745	 45.21	0	2803884..2804540	+	218	16079799	glnP	BSU27460	-	glutamine ABC transporter (integral membrane protein)
2746	 44.38	0	2804931..2805455	-	174	16079800	yrrD	BSU27470	-	hypothetical protein
2747	 45.85	0	2805513..2807909	-	798	16079801	yrrC	BSU27480	-	hypothetical protein
2748	 45.09	0	2807934..2808554	-	206	16079802	yrrB	BSU27490	-	hypothetical protein
2749	 47.29	0	2808640..2809764	-	374	50812273	trmU	BSU27500	-	tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
2750	 48.16	+1	2809786..2810925	-	379	50812274	yrvO	BSU27510	-	hypothetical protein
2751	 49.11	+1	2811027..2811362	-	111	16079806	yrzC	BSU27520	-	hypothetical protein
2752	 45.97	0	2811562..2812827	+	421	16079807	yrvN	BSU27530	-	recombination factor protein RarA
2753	 44.58	0	2812869..2813633	-	254	50812275	yrvM	BSU27540	-	hypothetical protein
2754	 47.72	0	2813969..2815747	-	592	16079809	aspS	BSU27550	-	aspartyl-tRNA synthetase
2755	 45.10	0	2815761..2817035	-	424	16079810	hisS	BSU27560	-	histidyl-tRNA synthetase
2756	 43.86	0	2817417..2817587	-	56	16079811	yrzK	BSU27570	-	hypothetical protein
2757	 48.23	+1	2817720..2819276	+	518	16079812	yrvJ	BSU27580	-	hypothetical protein
2758	 44.36	0	2819303..2819701	-	132	50812276	yrvI	BSU27590	-	D-tyrosyl-tRNA deacylase
2759	 44.31	0	2819755..2821959	-	734	16079814	relA	BSU27600	-	GTP pyrophosphokinase
2760	 44.05	0	2822127..2822639	-	170	16079815	apt	BSU27610	-	adenine phosphoribosyltransferase
2761	 46.29	0	2822645..2825005	-	786	16079816	yrvE	BSU27620	-	hypothetical protein
2762	 37.65	-1	2825072..2825395	-	107	16079817	yrvD	BSU27630	-	hypothetical protein
2763	 44.18	0	2825471..2825968	-	165	16079818	yrvC	BSU27640	-	hypothetical protein
2764	 43.41	0	2826126..2828339	-	737	16081162	secDF	BSU27650	-	bifunctional preprotein translocase subunit SecD/SecF
2765	 41.08	0	2828378..2828674	-	98	16079819	yrzD	BSU27660	-	hypothetical protein
2766	 47.40	0	2828790..2830346	+	518	16079820	spoVB	BSU27670	-	involved in spore cortex synthesis (stage V sporulation)
2767	 38.81	0	2830350..2831006	-	218	16079821	yrbG	BSU27680	-	hypothetical protein
2768	 43.49	0	2831141..2831593	+	150	16079822	yrzE	BSU27690	-	hypothetical protein
2769	 44.44	0	2831650..2831919	-	89	16079823	yajC	BSU27700	-	preprotein translocase subunit YajC
2770	 47.12	0	2831953..2833098	-	381	16079824	tgt	BSU27710	-	queuine tRNA-ribosyltransferase
2771	 45.77	0	2833125..2834153	-	342	16079825	queA	BSU27720	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2772	 50.15	+1	2834376..2835380	-	334	50812277	ruvB	BSU27730	-	Holliday junction DNA helicase B
2773	 40.76	0	2835391..2835996	-	201	16079826	ruvA	BSU27740	-	Holliday junction DNA helicase motor protein
2774	 46.39	0	2836135..2836647	-	170	16079827	bofC	BSU27750	-	forespore regulator of the sigma-K checkpoint
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.