IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2645	 40.74	0	2706989..2707096	+	35	16079699	yrkM	BSU26460	-	hypothetical protein
2646	 40.00	0	2707401..2707925	-	174	16079700	yrkL	BSU26470	-	hypothetical protein
2647	 30.82	-2	2708169..2708645	-	158	16079701	yrkK	BSU26480	-	hypothetical protein
2648	 37.28	-1	2709228..2710013	-	261	16079702	yrkJ	BSU26490	-	hypothetical protein
2649	 39.47	0	2710074..2710301	-	75	16079703	yrkI	BSU26500	-	hypothetical protein
2650	 41.10	0	2710335..2711222	-	295	16079704	yrkH	BSU26510	-	hypothetical protein
2651	 31.53	-2	2711351..2711461	-	36	16079705	yrkG	BSU26520	-	hypothetical protein
2652	 39.61	0	2711803..2712360	-	185	16079706	yrkF	BSU26530	-	hypothetical protein
2653	 37.68	-1	2712546..2713028	-	160	16079707	yrkE	BSU26540	-	hypothetical protein
2654	 40.10	0	2713175..2713366	-	63	16079708	yrkD	BSU26550	-	hypothetical protein
2655	 39.39	0	2714159..2714719	-	186	16079709	yrkC	BSU26560	-	hypothetical protein
2656	 42.18	0	2714945..2715091	-	48	16079710	yrkB	BSU26570	-	hypothetical protein
2657	 34.18	-1	2715261..2716082	-	273	16079711	bltR	BSU26580	-	transcriptional regulator
2658	 38.99	0	2716199..2717401	+	400	16079712	blt	BSU26590	-	multidrug-efflux transporter
2659	 33.99	-2	2717570..2718028	+	152	16079713	bltD	BSU26600	-	spermine/spermidine acetyltransferase
2660	 36.32	-1	2718185..2719489	-	434	16079714	yrkA	BSU26610	-	hypothetical protein
2661	 35.09	-1	2719913..2720878	-	321	16079715	yrdR	BSU26620	-	hypothetical protein
2662	 38.41	-1	2721004..2721870	+	288	16079716	yrdQ	BSU26630	-	hypothetical protein
2663	 33.82	-2	2721993..2723030	-	345	16079717	trkA	BSU26640	-	potassium uptake
2664	 38.25	-1	2723118..2724053	-	311	16079718	czcD	BSU26650	-	cation-efflux system membrane protein
2665	 35.90	-1	2724340..2724729	-	129	16079719	yrdN	BSU26660	-	hypothetical protein
2666	 39.84	0	2725063..2725953	+	296	16079720	gltR	BSU26670	-	LysR family transcriptional regulator
2667	 39.94	0	2726111..2726428	-	105	16079721	yrdK	BSU26680	-	hypothetical protein
2668	 39.08	0	2726386..2727708	-	440	16079722	brnQ	BSU26690	-	branched-chain amino acid transporter
2669	 43.24	0	2727873..2728205	-	110	16079723	azlD	BSU26700	-	branched-chain amino acid transport
2670	 38.95	0	2728202..2728966	-	254	16079724	azlC	BSU26710	-	branched-chain amino acid transport
2671	 36.29	-1	2728979..2729452	-	157	16079725	azlB	BSU26720	-	AsnC/Lrp family transcriptional regulator
2672	 33.33	-2	2729786..2730061	-	91	16079726	yrdF	BSU26730	-	hypothetical protein
2673	 39.09	0	2730333..2731565	-	410	16079727	cypA	BSU26740	-	cytochrome P450-like enzyme
2674	 31.33	-2	2731958..2732107	-	49	16079728	yrdD	BSU26750	-	hypothetical protein
2675	 34.04	-2	2732206..2732769	-	187	16079729	yrdC	BSU26760	-	hypothetical protein
2676	 33.60	-2	2732998..2733369	-	123	16079730	yrdB	BSU26770	-	hypothetical protein
2677	 39.09	0	2734179..2734682	-	167	16079731	yrdA	BSU26780	-	hypothetical protein
2678	 36.26	-1	2734908..2735762	-	284	16079732	aadK	BSU26790	-	aminoglycoside 6-adenylyltransferase
2679	 41.00	0	2736141..2737184	+	347	16079733	yrpB	BSU26800	-	hypothetical protein
2680	 34.71	-1	2737534..2738331	+	265	16079734	yrpC	BSU26810	-	hypothetical protein
2681	 44.63	0	2738712..2739419	+	235	16079735	yrpD	BSU26820	-	hypothetical protein
2682	 38.49	-1	2740583..2741338	-	251	16079736	yrpE	BSU26830	-	hypothetical protein
2683	 38.42	-1	2741470..2742000	-	176	16079737	sigZ	BSU26840	-	RNA polymerase sigma factor SigZ
2684	 45.85	0	2742165..2743115	+	316	16079738	yrpG	BSU26850	-	hypothetical protein
2685	 39.10	0	2743389..2744705	-	438	16079739	yraO	BSU26860	-	hypothetical protein
2686	 37.13	-1	2744820..2745689	-	289	16079740	yraN	BSU26870	-	hypothetical protein
2687	 42.48	0	2745834..2746937	+	367	16079741	yraM	BSU26880	-	hypothetical protein
2688	 44.84	0	2747210..2748043	-	277	16079742	csn	BSU26890	-	chitosanase
2689	 32.58	-2	2748486..2748749	+	87	16079743	yraL	BSU26900	-	hypothetical protein
2690	 46.81	0	2748886..2749575	+	229	16079744	yraK	BSU26910	-	hypothetical protein
2691	 43.80	0	2750108..2750470	-	120	16079745	yraJ	BSU26920	-	hypothetical protein
2692	 45.75	0	2750517..2750951	-	144	16079746	yraI	BSU26930	-	hypothetical protein
2693	 35.14	-1	2751392..2751778	-	128	16079747	yraH	BSU26940	-	hypothetical protein
2694	 42.28	0	2752027..2752272	+	81	16079748	yraG	BSU26950	-	hypothetical protein
2695	 43.63	0	2752290..2752658	+	122	16079749	yraF	BSU26960	-	hypothetical protein
2696	 43.27	0	2752677..2753813	+	378	16079750	adhB	BSU26970	-	alcohol dehydrogenase
2697	 39.39	0	2753832..2754029	+	65	16079751	yraE	BSU26980	-	hypothetical protein
2698	 40.67	0	2754045..2754344	+	99	16079752	yraD	BSU26990	-	hypothetical protein
2699	 41.61	0	2754607..2755029	-	140	16079754	yraB	BSU27000	-	hypothetical protein
2700	 47.52	0	2755537..2756586	+	349	16079755	adhA	BSU27010	-	NADP-dependent alcohol dehydrogenase
2701	 42.75	0	2756717..2757226	+	169	50812271	yraA	BSU27020	-	hypothetical protein
2702	 45.48	0	2757268..2759301	-	677	16079757	sacC	BSU27030	-	levanase
2703	 44.32	0	2759458..2760285	-	275	16079758	levG	BSU27040	-	phosphotransferase system (PTS) fructose-specific enzyme IID component
2704	 45.80	0	2760306..2761115	-	269	16079759	levF	BSU27050	-	phosphotransferase system (PTS) fructose-specific enzyme IIC component
2705	 43.35	0	2761132..2761620	-	162	16079760	levE	BSU27060	-	phosphotransferase system (PTS) fructose-specific enzyme IIB component
2706	 40.82	0	2761620..2762060	-	146	16079761	levD	BSU27070	-	phosphotransferase system (PTS) fructose-specific enzyme IIA component
2707	 40.72	0	2762250..2765066	-	938	16079762	levR	BSU27080	-	NifA/NtrC family transcriptional regulator
2708	 42.17	0	2765783..2767162	+	459	16079763	aapA	BSU27090	-	amino acid permease
2709	 37.28	-1	2767269..2767901	-	210	16079764	yrhP	BSU27100	-	hypothetical protein
2710	 40.22	0	2768054..2768881	+	275	16079765	yrhO	BSU27110	-	hypothetical protein
2711	 37.52	-1	2769077..2769577	+	166	16079766	sigV	BSU27120	-	RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V)
2712	 38.34	-1	2769577..2770434	+	285	16079767	yrhM	BSU27130	-	hypothetical protein
2713	 43.10	0	2770545..2772449	+	634	16079768	yrhL	BSU27140	-	hypothetical protein
2714	 37.80	-1	2772583..2772873	+	96	16079769	yrhK	BSU27150	-	hypothetical protein
2715	 46.60	0	2773117..2776281	-	1054	16079770	yrhJ	BSU27160	-	hypothetical protein
2716	 39.66	0	2776297..2776881	-	194	16079771	yrhI	BSU27170	-	hypothetical protein
2717	 36.65	-1	2777104..2777646	-	180	16079772	yrhH	BSU27180	-	hypothetical protein
2718	 32.00	-2	2778150..2778299	-	49	16079773	yrzI	BSU27190	-	hypothetical protein
2719	 45.82	0	2778689..2779489	-	266	16079774	yrhG	BSU27200	-	hypothetical protein
2720	 39.02	0	2779752..2780120	-	122	16079775	yrhF	BSU27210	-	hypothetical protein
2721	 46.59	0	2780436..2783378	+	980	16079776	yrhE	BSU27220	-	hypothetical protein
2722	 44.93	0	2783397..2783879	+	160	16079777	yrhD	BSU27230	-	hypothetical protein
2723	 38.96	0	2783915..2784145	-	76	16079778	yrhC	BSU27240	-	hypothetical protein
2724	 46.67	0	2784228..2785367	-	379	16079779	yrhB	BSU27250	-	cystathionine beta-lyase
2725	 46.43	0	2785369..2786292	-	307	16079780	yrhA	BSU27260	-	hypothetical protein
2726	 44.68	0	2786357..2787052	-	231	16079781	mtn	BSU27270	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
2727	 43.93	0	2787073..2787714	-	213	16079782	yrrT	BSU27280	-	hypothetical protein
2728	 37.75	-1	2787907..2788110	+	67	16079783	yrzA	BSU27290	-	hypothetical protein
2729	 42.45	0	2788147..2788848	-	233	16079784	yrrS	BSU27300	-	hypothetical protein
2730	 43.82	0	2788913..2790667	-	584	16079785	yrrR	BSU27310	-	hypothetical protein
2731	 42.83	0	2790721..2791194	-	157	16079786	greA	BSU27320	-	transcription elongation factor GreA
2732	 41.04	0	2791445..2792080	-	211	16079787	udk	BSU27330	-	uridine kinase
2733	 45.55	0	2792087..2793355	-	422	16079788	yrrO	BSU27340	-	hypothetical protein
2734	 43.33	0	2793374..2794303	-	309	16079789	yrrN	BSU27350	-	hypothetical protein
2735	 42.20	0	2794309..2794962	-	217	16079790	yrrM	BSU27360	-	hypothetical protein
2736	 39.89	0	2795114..2796196	-	360	16079791	yrrL	BSU27370	-	hypothetical protein
2737	 38.65	-1	2796327..2796608	-	93	16079792	yrzB	BSU27380	-	hypothetical protein
2738	 42.69	0	2796626..2797042	-	138	16079793	yrrK	BSU27390	-	Holliday junction resolvase-like protein
2739	 40.82	0	2797050..2797316	-	88	50812272	yrzL	BSU27400	-	hypothetical protein
2740	 46.87	0	2797401..2800037	-	878	16079794	alaS	BSU27410	-	alanyl-tRNA synthetase
2741	 45.67	0	2800368..2801429	-	353	16079795	yrrI	BSU27420	-	hypothetical protein
2742	 45.82	0	2801585..2802313	+	242	16079796	glnQ	BSU27430	-	glutamine ABC transporter ATP-binding protein
2743	 41.00	0	2802335..2803156	+	273	16079797	glnH	BSU27440	-	glutamine ABC transporter (glutamine-binding protein)
2744	 45.01	0	2803217..2803867	+	216	16079798	glnM	BSU27450	-	glutamine ABC transporter (integral membrane protein)
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.