IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2602	 43.25	0	2671933..2676690	-	1585	16079656	yqbO	BSU26030	-	hypothetical protein
2603	 41.56	0	2676872..2677321	-	149	16079657	yqbN	BSU26040	-	hypothetical protein
2604	 36.11	-1	2677467..2677646	+	59	16079658	yqdB	BSU26050	-	hypothetical protein
2605	 42.12	0	2678369..2678812	-	147	16079659	yqbM	BSU26060	-	hypothetical protein
2606	 37.78	-1	2678815..2679219	-	134	16079660	yqbL	BSU26070	-	hypothetical protein
2607	 44.77	0	2679297..2680214	-	305	16079661	yqbK	BSU26080	-	hypothetical protein
2608	 42.24	0	2680403..2680840	-	145	16079662	yqbJ	BSU26090	-	hypothetical protein
2609	 45.04	0	2680853..2681356	-	167	16079663	yqbI	BSU26100	-	hypothetical protein
2610	 41.05	0	2681353..2681715	-	120	16079664	yqbH	BSU26110	-	hypothetical protein
2611	 37.88	-1	2681712..2682107	-	131	16079665	yqbG	BSU26120	-	hypothetical protein
2612	 34.94	-1	2682111..2682422	-	103	16079666	yqbF	BSU26130	-	hypothetical protein
2613	 41.03	0	2682433..2683368	-	311	16079667	yqbE	BSU26140	-	hypothetical protein
2614	 41.18	0	2683387..2684355	-	322	16079668	yqbD	BSU26150	-	hypothetical protein
2615	 29.66	-2	2684388..2685041	-	217	16079669	yqbC	BSU26160	-	hypothetical protein
2616	 42.70	0	2685082..2685999	-	305	16079670	yqbB	BSU26170	-	hypothetical protein
2617	 39.01	0	2685996..2687528	-	510	16079671	yqbA	BSU26180	-	hypothetical protein
2618	 41.36	0	2687532..2688827	-	431	16079672	yqaT	BSU26190	-	hypothetical protein
2619	 40.28	0	2688820..2689539	-	239	16079673	yqaS	BSU26200	-	hypothetical protein
2620	 27.31	-2	2689607..2690071	-	154	16079674	yqaR	BSU26210	-	hypothetical protein
2621	 40.13	0	2690215..2690670	-	151	16079675	yqaQ	BSU26220	-	hypothetical protein
2622	 32.04	-2	2690868..2691797	+	309	16079676	yqaP	BSU26230	-	hypothetical protein
2623	 39.61	0	2691871..2692077	-	68	16079677	yqaO	BSU26240	-	hypothetical protein
2624	 42.42	0	2692159..2692587	-	142	16079678	yqaN	BSU26250	-	hypothetical protein
2625	 40.13	0	2692823..2693764	-	313	16079679	yqaM	BSU26260	-	hypothetical protein
2626	 41.74	0	2693646..2694347	-	233	16079680	yqaL	BSU26270	-	hypothetical protein
2627	 40.23	0	2694399..2695253	-	284	16079681	yqaK	BSU26280	-	hypothetical protein
2628	 40.31	0	2695256..2696215	-	319	16079682	yqaJ	BSU26290	-	hypothetical protein
2629	 37.95	-1	2696321..2696515	-	64	16079683	yqaI	BSU26300	-	hypothetical protein
2630	 40.31	0	2696645..2696902	-	85	16079684	yqaH	BSU26310	-	hypothetical protein
2631	 42.81	0	2696899..2697468	-	189	16079685	yqaG	BSU26320	-	hypothetical protein
2632	 40.43	0	2697542..2697682	-	46	16079686	yqdA	BSU26330	-	hypothetical protein
2633	 35.50	-1	2697712..2697942	-	76	16079687	yqaF	BSU26340	-	hypothetical protein
2634	 35.90	-1	2698119..2698469	+	116	16079688	yqaE	BSU26350	-	hypothetical protein
2635	 21.43	-2	2698736..2698903	-	55	16079689	yqaD	BSU26360	-	hypothetical protein
2636	 37.24	-1	2699259..2699795	-	178	16079690	yqaC	BSU26370	-	hypothetical protein
2637	 35.07	-1	2700064..2700582	+	172	16079691	yqaB	BSU26380	-	hypothetical protein
2638	 42.93	0	2700564..2700980	+	138	16079692	spoIIIC	BSU26390	-	RNA polymerase sporulation-specific sigma factor (sigma-K) (C-terminal half)
2639	 41.21	0	2701205..2701369	-	54	16079693	yrkS	BSU26400	-	hypothetical protein
2640	 39.05	0	2701914..2702333	-	139	16079694	yrkR	BSU26410	-	phosphate-starvation-inducible protein PsiE
2641	 42.26	0	2702376..2703674	-	432	16079695	yrkQ	BSU26420	-	hypothetical protein
2642	 42.82	0	2703661..2704356	-	231	16079696	yrkP	BSU26430	-	hypothetical protein
2643	 44.25	0	2704624..2705841	+	405	16079697	yrkO	BSU26440	-	hypothetical protein
2644	 39.61	0	2706353..2706910	+	185	16079698	yrkN	BSU26450	-	hypothetical protein
2645	 40.74	0	2706989..2707096	+	35	16079699	yrkM	BSU26460	-	hypothetical protein
2646	 40.00	0	2707401..2707925	-	174	16079700	yrkL	BSU26470	-	hypothetical protein
2647	 30.82	-2	2708169..2708645	-	158	16079701	yrkK	BSU26480	-	hypothetical protein
2648	 37.28	-1	2709228..2710013	-	261	16079702	yrkJ	BSU26490	-	hypothetical protein
2649	 39.47	0	2710074..2710301	-	75	16079703	yrkI	BSU26500	-	hypothetical protein
2650	 41.10	0	2710335..2711222	-	295	16079704	yrkH	BSU26510	-	hypothetical protein
2651	 31.53	-2	2711351..2711461	-	36	16079705	yrkG	BSU26520	-	hypothetical protein
2652	 39.61	0	2711803..2712360	-	185	16079706	yrkF	BSU26530	-	hypothetical protein
2653	 37.68	-1	2712546..2713028	-	160	16079707	yrkE	BSU26540	-	hypothetical protein
2654	 40.10	0	2713175..2713366	-	63	16079708	yrkD	BSU26550	-	hypothetical protein
2655	 39.39	0	2714159..2714719	-	186	16079709	yrkC	BSU26560	-	hypothetical protein
2656	 42.18	0	2714945..2715091	-	48	16079710	yrkB	BSU26570	-	hypothetical protein
2657	 34.18	-1	2715261..2716082	-	273	16079711	bltR	BSU26580	-	transcriptional regulator
2658	 38.99	0	2716199..2717401	+	400	16079712	blt	BSU26590	-	multidrug-efflux transporter
2659	 33.99	-2	2717570..2718028	+	152	16079713	bltD	BSU26600	-	spermine/spermidine acetyltransferase
2660	 36.32	-1	2718185..2719489	-	434	16079714	yrkA	BSU26610	-	hypothetical protein
2661	 35.09	-1	2719913..2720878	-	321	16079715	yrdR	BSU26620	-	hypothetical protein
2662	 38.41	-1	2721004..2721870	+	288	16079716	yrdQ	BSU26630	-	hypothetical protein
2663	 33.82	-2	2721993..2723030	-	345	16079717	trkA	BSU26640	-	potassium uptake
2664	 38.25	-1	2723118..2724053	-	311	16079718	czcD	BSU26650	-	cation-efflux system membrane protein
2665	 35.90	-1	2724340..2724729	-	129	16079719	yrdN	BSU26660	-	hypothetical protein
2666	 39.84	0	2725063..2725953	+	296	16079720	gltR	BSU26670	-	LysR family transcriptional regulator
2667	 39.94	0	2726111..2726428	-	105	16079721	yrdK	BSU26680	-	hypothetical protein
2668	 39.08	0	2726386..2727708	-	440	16079722	brnQ	BSU26690	-	branched-chain amino acid transporter
2669	 43.24	0	2727873..2728205	-	110	16079723	azlD	BSU26700	-	branched-chain amino acid transport
2670	 38.95	0	2728202..2728966	-	254	16079724	azlC	BSU26710	-	branched-chain amino acid transport
2671	 36.29	-1	2728979..2729452	-	157	16079725	azlB	BSU26720	-	AsnC/Lrp family transcriptional regulator
2672	 33.33	-2	2729786..2730061	-	91	16079726	yrdF	BSU26730	-	hypothetical protein
2673	 39.09	0	2730333..2731565	-	410	16079727	cypA	BSU26740	-	cytochrome P450-like enzyme
2674	 31.33	-2	2731958..2732107	-	49	16079728	yrdD	BSU26750	-	hypothetical protein
2675	 34.04	-2	2732206..2732769	-	187	16079729	yrdC	BSU26760	-	hypothetical protein
2676	 33.60	-2	2732998..2733369	-	123	16079730	yrdB	BSU26770	-	hypothetical protein
2677	 39.09	0	2734179..2734682	-	167	16079731	yrdA	BSU26780	-	hypothetical protein
2678	 36.26	-1	2734908..2735762	-	284	16079732	aadK	BSU26790	-	aminoglycoside 6-adenylyltransferase
2679	 41.00	0	2736141..2737184	+	347	16079733	yrpB	BSU26800	-	hypothetical protein
2680	 34.71	-1	2737534..2738331	+	265	16079734	yrpC	BSU26810	-	hypothetical protein
2681	 44.63	0	2738712..2739419	+	235	16079735	yrpD	BSU26820	-	hypothetical protein
2682	 38.49	-1	2740583..2741338	-	251	16079736	yrpE	BSU26830	-	hypothetical protein
2683	 38.42	-1	2741470..2742000	-	176	16079737	sigZ	BSU26840	-	RNA polymerase sigma factor SigZ
2684	 45.85	0	2742165..2743115	+	316	16079738	yrpG	BSU26850	-	hypothetical protein
2685	 39.10	0	2743389..2744705	-	438	16079739	yraO	BSU26860	-	hypothetical protein
2686	 37.13	-1	2744820..2745689	-	289	16079740	yraN	BSU26870	-	hypothetical protein
2687	 42.48	0	2745834..2746937	+	367	16079741	yraM	BSU26880	-	hypothetical protein
2688	 44.84	0	2747210..2748043	-	277	16079742	csn	BSU26890	-	chitosanase
2689	 32.58	-2	2748486..2748749	+	87	16079743	yraL	BSU26900	-	hypothetical protein
2690	 46.81	0	2748886..2749575	+	229	16079744	yraK	BSU26910	-	hypothetical protein
2691	 43.80	0	2750108..2750470	-	120	16079745	yraJ	BSU26920	-	hypothetical protein
2692	 45.75	0	2750517..2750951	-	144	16079746	yraI	BSU26930	-	hypothetical protein
2693	 35.14	-1	2751392..2751778	-	128	16079747	yraH	BSU26940	-	hypothetical protein
2694	 42.28	0	2752027..2752272	+	81	16079748	yraG	BSU26950	-	hypothetical protein
2695	 43.63	0	2752290..2752658	+	122	16079749	yraF	BSU26960	-	hypothetical protein
2696	 43.27	0	2752677..2753813	+	378	16079750	adhB	BSU26970	-	alcohol dehydrogenase
2697	 39.39	0	2753832..2754029	+	65	16079751	yraE	BSU26980	-	hypothetical protein
2698	 40.67	0	2754045..2754344	+	99	16079752	yraD	BSU26990	-	hypothetical protein
2699	 41.61	0	2754607..2755029	-	140	16079754	yraB	BSU27000	-	hypothetical protein
2700	 47.52	0	2755537..2756586	+	349	16079755	adhA	BSU27010	-	NADP-dependent alcohol dehydrogenase
2701	 42.75	0	2756717..2757226	+	169	50812271	yraA	BSU27020	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.