IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2488	 43.97	0	2572992..2573555	-	187	16079545	yqgN	BSU24890	-	hypothetical protein
2489	 36.00	-1	2573640..2573789	-	49	18677781	rpmG	BSU24900	-	50S ribosomal protein L33
2490	 46.39	0	2573873..2574952	-	359	16079546	yqgM	BSU24910	-	hypothetical protein
2491	 42.25	0	2574949..2575419	-	156	16079547	yqgL	BSU24920	-	hypothetical protein
2492	 37.57	-1	2575599..2575952	+	117	16079548	yqzD	BSU24930	-	hypothetical protein
2493	 40.00	0	2575949..2576413	+	154	16079549	yqzC	BSU24940	-	hypothetical protein
2494	 41.76	0	2576442..2577224	-	260	16079550	pstBB	BSU24950	-	phosphate ABC transporter ATP-binding protein
2495	 41.60	0	2577235..2578044	-	269	16079551	pstBA	BSU24960	-	phosphate ABC transporter ATP-binding protein
2496	 44.63	0	2578065..2578949	-	294	16079552	pstA	BSU24970	-	phosphate ABC transporter (permease)
2497	 45.91	0	2578949..2579878	-	309	16079553	pstC	BSU24980	-	phosphate ABC transporter (permease)
2498	 42.30	0	2579947..2580849	-	300	16079554	pstS	BSU24990	-	phosphate ABC transporter (binding protein)
2499	 39.89	0	2581003..2583153	-	716	16079555	pbpA	BSU25000	-	penicillin-binding protein 2A
2500	 42.46	0	2583267..2584559	-	430	16079556	yqgE	BSU25010	-	hypothetical protein
2501	 45.65	0	2584666..2585274	-	202	50812268	sodA	BSU25020	-	superoxide dismutase
2502	 42.65	0	2585453..2585935	-	160	16079558	yqgC	BSU25030	-	hypothetical protein
2503	 37.68	-1	2586045..2586803	+	252	16079559	yqgB	BSU25040	-	hypothetical protein
2504	 37.30	-1	2587229..2587657	-	142	16079560	yqgA	BSU25050	-	hypothetical protein
2505	 42.00	0	2587934..2588233	+	99	16079561	yqfZ	BSU25060	-	hypothetical protein
2506	 46.38	0	2588356..2589489	+	377	16079562	ispG	BSU25070	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2507	 45.13	0	2589515..2589904	-	129	16079563	yqfX	BSU25080	-	hypothetical protein
2508	 39.18	0	2590037..2590618	+	193	16079564	yqfW	BSU25090	-	hypothetical protein
2509	 39.95	0	2590661..2591098	-	145	16079565	zur	BSU25100	-	FUR family transcriptional regulator
2510	 40.48	0	2591236..2592117	-	293	16079566	yqfU	BSU25110	-	hypothetical protein
2511	 36.86	-1	2592233..2592487	+	84	16079567	yqfT	BSU25120	-	hypothetical protein
2512	 42.17	0	2592514..2593407	-	297	16079568	yqfS	BSU25130	-	endonuclease IV
2513	 42.67	0	2593417..2594733	-	438	16079569	yqfR	BSU25140	-	hypothetical protein
2514	 47.85	0	2594902..2595645	+	247	16079570	yqfQ	BSU25150	-	hypothetical protein
2515	 42.86	0	2595768..2596712	+	314	16079571	ispH	BSU25160	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2516	 43.85	0	2596735..2597856	-	373	16079572	yqfO	BSU25170	-	hypothetical protein
2517	 46.85	0	2597849..2598499	-	216	16079573	yqfN	BSU25180	-	hypothetical protein
2518	 41.60	0	2598756..2599118	-	120	16079574	cccA	BSU25190	-	cytochrome c550
2519	 42.38	0	2599447..2600562	-	371	16079575	sigA	BSU25200	-	RNA polymerase sigma factor RpoD
2520	 43.32	0	2600761..2602572	-	603	16079576	dnaG	BSU25210	-	DNA primase
2521	 44.78	0	2602212..2602508	+	98	50812269	antE	BSU25220	-	hypothetical protein
2522	 38.07	-1	2602606..2603196	-	196	16079577	yqxD	BSU25230	-	hypothetical protein
2523	 40.71	0	2603354..2604166	-	270	16079578	yqfL	BSU25240	-	hypothetical protein
2524	 44.44	0	2604192..2604830	-	212	16079579	yqzB	BSU25250	-	hypothetical protein
2525	 44.26	0	2604963..2607002	-	679	16079580	glyS	BSU25260	-	glycyl-tRNA synthetase subunit beta
2526	 45.27	0	2606995..2607882	-	295	16079581	glyQ	BSU25270	-	glycyl-tRNA synthetase subunit alpha
2527	 39.45	0	2608179..2608946	-	255	16079582	recO	BSU25280	-	DNA repair protein RecO
2528	 43.16	0	2609274..2610179	-	301	16079583	era	BSU25290	-	GTP-binding protein Era
2529	 45.01	0	2610160..2610570	-	136	16079584	cdd	BSU25300	-	cytidine/deoxycytidine deaminase
2530	 45.80	0	2610689..2611033	-	114	16079585	dgkA	BSU25310	-	diacylglycerol kinase
2531	 43.25	0	2611040..2611513	-	157	16079586	yqfG	BSU25320	-	putative metalloprotease
2532	 41.76	0	2611514..2613649	-	711	16079587	yqfF	BSU25330	-	hypothetical protein
2533	 43.44	0	2613728..2614687	-	319	16079588	phoH	BSU25340	-	phosphate starvation-induced protein
2534	 40.85	0	2614684..2615880	-	398	16079589	yqfD	BSU25350	-	hypothetical protein
2535	 43.97	0	2615899..2616180	-	93	16079590	yqfC	BSU25360	-	hypothetical protein
2536	 45.48	0	2616237..2616656	-	139	16079591	yqfB	BSU25370	-	hypothetical protein
2537	 47.59	0	2616681..2617676	-	331	16079592	yqfA	BSU25380	-	hypothetical protein
2538	 46.42	0	2617698..2619011	-	437	16079593	yqeZ	BSU25390	-	hypothetical protein
2539	 40.94	0	2619142..2619588	-	148	16079594	yqeY	BSU25400	-	hypothetical protein
2540	 39.08	0	2619603..2619776	-	57	16079595	rpsU	BSU25410	-	30S ribosomal protein S21
2541	 43.62	0	2619940..2620872	+	310	16079596	yqeW	BSU25420	-	hypothetical protein
2542	 43.51	0	2620909..2622264	-	451	16079597	yqeV	BSU25430	-	hypothetical protein
2543	 46.30	0	2622264..2623034	-	256	16079598	yqeU	BSU25440	-	hypothetical protein
2544	 43.06	0	2623057..2623992	-	311	16079599	prmA	BSU25450	-	ribosomal protein L11 methyltransferase
2545	 47.10	0	2624017..2625135	-	372	16079600	dnaJ	BSU25460	-	heat-shock protein
2546	 44.12	0	2625335..2627170	-	611	16079601	dnaK	BSU25470	-	class I heat-shock protein (molecular chaperone)
2547	 43.09	0	2627194..2627757	-	187	16079602	grpE	BSU25480	-	heat-shock protein
2548	 41.57	0	2627829..2628860	-	343	16079603	hrcA	BSU25490	-	heat-inducible transcription repressor
2549	 42.96	0	2628980..2630080	-	366	16079604	hemN	BSU25500	-	coproporphyrinogen III oxidase
2550	 46.93	0	2630133..2631971	-	612	16079605	lepA	BSU25510	-	GTP-binding protein LepA
2551	 43.07	0	2632105..2632443	-	112	16079606	yqxA	BSU25520	-	hypothetical protein
2552	 45.52	0	2632460..2633665	-	401	16079607	spoIIP	BSU25530	-	required for dissolution of the septal cell wall (stage II sporulation)
2553	 46.07	0	2633728..2634834	-	368	16079608	gpr	BSU25540	-	germination protease
2554	 40.07	0	2635038..2635304	+	88	16079609	rpsT	BSU25550	-	30S ribosomal protein S20
2555	 41.67	0	2635319..2636362	-	347	16079610	holA	BSU25560	-	DNA polymerase III subunit delta
2556	 44.49	0	2636766..2639096	-	776	16079611	comEC	BSU25570	-	putative integral membrane protein
2557	 43.51	0	2639100..2639669	-	189	16079612	comEB	BSU25580	-	required for DNA binding and uptake (competence)
2558	 45.95	0	2639736..2640353	-	205	16079613	comEA	BSU25590	-	unspecific high-affinity DNA-binding protein
2559	 43.19	0	2640437..2641258	+	273	16079614	comER	BSU25600	-	late competence protein ComER
2560	 44.09	0	2641324..2642067	-	247	16079615	yqeM	BSU25610	-	hypothetical protein
2561	 43.70	0	2642064..2642420	-	118	16079616	yqeL	BSU25620	-	hypothetical protein
2562	 45.63	0	2642438..2642998	-	186	16079617	yqeK	BSU25630	-	hypothetical protein
2563	 42.28	0	2642988..2643557	-	189	16079618	nadD	BSU25640	-	nicotinic acid mononucleotide adenylyltransferase
2564	 39.52	0	2643569..2643859	-	96	16079619	yqeI	BSU25650	-	hypothetical protein
2565	 43.06	0	2643853..2644695	-	280	16079620	aroE	BSU25660	-	shikimate 5-dehydrogenase
2566	 42.23	0	2644713..2645813	-	366	16079621	yqeH	BSU25670	-	GTP-binding protein YqeH
2567	 42.97	0	2645817..2646335	-	172	16079622	yqeG	BSU25680	-	hypothetical protein
2568	 30.82	-2	2646679..2646837	+	52	50812270	sda	BSU25690	-	mediates a developmental checkpoint coupling initiation of sporulation (phosphorylation of Spo0A) to the function of replication initiation proteins
2569	 43.31	0	2647143..2647874	-	243	16079623	yqeF	BSU25700	-	hypothetical protein
2570	 44.22	0	2648126..2648878	-	250	16079624	cwlH	BSU25710	-	N-acetylmuramoyl-L-alanine amidase
2571	 39.55	0	2649065..2649691	+	208	16079625	yqeD	BSU25720	-	hypothetical protein
2572	 45.19	0	2649710..2650603	-	297	16079626	yqeC	BSU25730	-	6-phosphogluconate dehydrogenase-like protein
2573	 44.49	0	2650855..2651580	+	241	16079627	yqeB	BSU25740	-	hypothetical protein
2574	 51.09	+1	2651613..2652023	-	136	16079628	nucB	BSU25750	-	nuclease
2575	 40.34	0	2652219..2652689	+	156	16079629	spoIVCB	BSU25760	-	RNA polymerase sporulation-specific sigma factor (sigma-K) (N-terminal half)
2576	 37.19	-1	2652597..2654099	-	500	16079630	spoIVCA	BSU25770	-	site-specific DNA recombinase
2577	 40.48	0	2654548..2654967	-	139	16079631	arsC	BSU25780	-	arsenate reductase
2578	 36.41	-1	2654979..2656019	-	346	16079632	arsB	BSU25790	-	membrane-associated protein
2579	 36.28	-1	2656042..2656482	-	146	16079633	yqcK	BSU25800	-	hypothetical protein
2580	 33.65	-2	2656543..2656860	-	105	16079634	arsR	BSU25810	-	ArsR family transcriptional regulator
2581	 36.86	-1	2657232..2657996	-	254	16079635	yqcI	BSU25820	-	hypothetical protein
2582	 35.73	-1	2658440..2659567	+	375	16079636	rapE	BSU25830	-	response regulator aspartate phosphatase
2583	 37.04	-1	2659557..2659691	+	44	16079637	phrE	BSU25840	-	regulator of the activity of phosphatase RapE
2584	 34.59	-1	2659801..2659959	+	52	16079638	yqzI	BSU25850	-	hypothetical protein
2585	 38.60	-1	2660329..2661924	+	531	16079639	yqcG	BSU25860	-	hypothetical protein
2586	 35.41	-1	2661939..2662517	+	192	16079640	yqcF	BSU25870	-	hypothetical protein
2587	 32.78	-2	2662778..2663140	-	120	16079641	yqxJ	BSU25880	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.