IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
197	 40.82	0	219074..219487	+	137	16077266	ybdD	BSU01970	-	hypothetical protein
198	 37.32	-1	219593..220018	+	141	16077267	ybdE	BSU01980	-	hypothetical protein
199	 40.97	0	220264..221154	+	296	16077268	ybdG	BSU01990	-	hypothetical protein
200	 39.88	0	221246..221917	+	223	16077269	ybdJ	BSU02000	-	hypothetical protein
201	 39.46	0	221938..222900	+	320	16077270	ybdK	BSU02010	-	hypothetical protein
202	 48.21	+1	222970..223164	+	64	16077271	ybdL	BSU02020	-	hypothetical protein
203	 41.76	0	223207..223977	-	256	16077272	ybdM	BSU02030	-	hypothetical protein
204	 40.91	0	224063..224920	-	285	16077273	ybdN	BSU02040	-	hypothetical protein
205	 43.12	0	225052..226236	+	394	16077274	ybdO	BSU02050	-	hypothetical protein
206	 45.93	0	226554..227942	+	462	16077275	ybxG	BSU02060	-	hypothetical protein
207	 36.55	-1	228054..228302	+	82	16077276	csgA	BSU02070	-	sporulation-specific SASP protein
208	 40.10	0	228319..228510	+	63	16077277	ybxH	BSU02080	-	hypothetical protein
209	 44.90	0	228537..229340	-	267	16077278	ybxI	BSU02090	-	hypothetical protein
210	 48.56	+1	229513..230766	+	417	16077279	cypC	BSU02100	-	fatty acid beta-hydroxylating cytochrome P450
211	 42.15	0	230807..231067	-	86	16077280	ybyB	BSU02110	-	hypothetical protein
212	 45.56	0	231336..232955	+	539	16077281	ybeC	BSU02120	-	hypothetical protein
213	 45.46	0	233002..233883	-	293	16077282	glpQ	BSU02130	-	glycerophosphoryl diester phosphodiesterase
214	 46.44	0	233982..235316	-	444	16077283	glpT	BSU02140	-	glycerol-3-phosphate permease
215	 36.55	-1	235613..235861	+	82	16077284	ybeF	BSU02150	-	hypothetical protein
216	 44.23	0	235953..236870	+	305	16077285	ybfA	BSU02160	-	hypothetical protein
217	 50.84	+1	236867..238117	+	416	16077286	ybfB	BSU02170	-	hypothetical protein
218	 33.33	-2	238152..238436	-	94	16077287	ybfE	BSU02180	-	hypothetical protein
219	 29.17	-2	238632..239543	-	303	16077288	ybfF	BSU02190	-	hypothetical protein
220	 41.93	0	239632..241830	-	732	16077289	ybfG	BSU02200	-	hypothetical protein
221	 44.52	0	241905..242825	-	306	16077290	ybfH	BSU02210	-	hypothetical protein
222	 43.84	0	242822..243649	-	275	16077291	ybfI	BSU02220	-	hypothetical protein
223	 49.18	+1	243880..245034	+	384	16077292	purT	BSU02230	-	phosphoribosylglycinamide formyltransferase 2
224	 46.60	0	245178..246119	+	313	16077293	mpr	BSU02240	-	extracellular metalloprotease
225	 42.61	0	246082..246480	+	132	16077294	ybfJ	BSU02250	-	hypothetical protein
226	 47.59	0	246646..247536	+	296	16077295	ybfK	BSU02260	-	hypothetical protein
227	 44.19	0	247732..248265	+	177	16077296	pssA	BSU02270	-	phosphatidylserine synthase
228	 40.49	0	248256..248744	+	162	16077297	ybfM	BSU02280	-	hypothetical protein
229	 46.72	0	248737..249528	+	263	16077298	psd	BSU02290	-	phosphatidylserine decarboxylase
230	 44.44	0	249583..249861	+	92	16077299	ybfN	BSU02300	-	hypothetical protein
231	 43.18	0	249967..251307	+	446	16077300	ybfO	BSU02310	-	hypothetical protein
232	 39.75	0	251415..252302	+	295	16077301	ybfP	BSU02320	-	hypothetical protein
233	 44.17	0	252502..253470	+	322	16077302	ybfQ	BSU02330	-	hypothetical protein
234	 45.54	0	253506..254750	-	414	16077303	gltP	BSU02340	-	proton/glutamate symport protein
235	 48.52	+1	254895..256790	-	631	16077304	gamP	BSU02350	-	phosphotransferase system (PTS) glucosamine-specific enzyme IICBA component
236	 44.93	0	256811..257560	-	249	16077305	gamA	BSU02360	-	glucosamine-6-phosphate isomerase
237	 43.64	0	257779..258486	+	235	16077306	ybgA	BSU02370	-	hypothetical protein
238	 44.57	0	258520..258795	+	91	16077307	ybgB	BSU02380	-	hypothetical protein
239	 48.27	+1	259004..260074	+	356	16077308	ybgE	BSU02390	-	branched-chain amino acid aminotransferase
240	 49.04	+1	260111..261523	-	470	16077309	ybgF	BSU02400	-	hypothetical protein
241	 50.53	+1	261644..262591	-	315	16077310	mmuM	BSU02410	-	homocysteine methyltransferase
242	 47.13	0	262720..264111	-	463	16077311	ybgH	BSU02420	-	hypothetical protein
243	 49.39	+1	264181..265164	-	327	16077312	ybgJ	BSU02430	-	glutaminase
244	 45.02	0	265536..266699	+	387	16077313	ycbA	BSU02440	-	hypothetical protein
245	 46.67	0	266710..267654	+	314	16077314	ycbB	BSU02450	-	hypothetical protein
246	 48.54	+1	267881..268807	+	308	16077315	ycbC	BSU02460	-	5-dehydro-4-deoxyglucarate dehydratase
247	 51.40	+1	268837..270303	+	488	16077316	ycbD	BSU02470	-	hypothetical protein
248	 49.49	+1	270387..271754	+	455	16077317	ycbE	BSU02480	-	hypothetical protein
249	 52.49	+1	271791..273158	+	455	16077318	ycbF	BSU02490	-	hypothetical protein
250	 45.87	0	273228..273929	+	233	16077319	ycbG	BSU02500	-	hypothetical protein
251	 52.71	+2	274020..275552	+	510	16077320	ycbH	BSU02510	-	hypothetical protein
252	 47.77	0	275829..276749	+	306	16077321	ycbJ	BSU02520	-	hypothetical protein
253	 43.83	0	277151..277312	+	53	16077322	yczA	BSU02530	-	hypothetical protein
254	 47.60	0	277333..278271	+	312	16077323	ycbK	BSU02540	-	hypothetical protein
255	 45.52	0	278368..279048	+	226	16077324	ycbL	BSU02550	-	hypothetical protein
256	 46.96	0	279050..279526	+	158	16077325	ycbM	BSU02560	-	hypothetical protein
257	 44.76	0	279682..280521	+	279	16077326	ycbN	BSU02570	-	hypothetical protein
258	 46.34	0	280640..281254	+	204	50812177	ycbO	BSU02580	-	hypothetical protein
259	 42.89	0	281309..281695	-	128	16077328	ycbP	BSU02590	-	hypothetical protein
260	 52.21	+1	282009..282437	+	142	16077329	cwlJ	BSU02600	-	cell wall hydrolase
261	 42.62	0	282543..283274	+	243	16077330	ycbR	BSU02610	-	hypothetical protein
262	 49.13	+1	283553..285223	+	556	16077331	phoD	BSU02620	-	phosphodiesterase/alkaline phosphatase D
263	 46.95	0	285318..285530	+	70	16077332	tatAD	BSU02630	-	component of the twin-arginine pre-protein translocation pathway
264	 47.02	0	285591..286328	+	245	16077333	tatCD	BSU02640	-	component of the twin-arginine pre-protein translocation pathway
265	 50.00	+1	286325..286972	-	215	16077334	pcp	BSU02650	-	pyrrolidone-carboxylate peptidase
266	 49.60	+1	287051..288163	+	370	16077335	ycbU	BSU02660	-	hypothetical protein
267	 47.36	0	288205..289644	-	479	16077336	lmrB	BSU02670	-	drug-export protein
268	 51.15	+1	289684..290250	-	188	16077337	lmrA	BSU02680	-	transcriptional regulator
269	 44.59	0	290467..291594	+	375	16077338	yccC	BSU02690	-	hypothetical protein
270	 45.07	0	291757..292395	+	212	16077339	lip	BSU02700	-	lipase
271	 47.14	0	292433..292816	-	127	16077340	yczC	BSU02710	-	hypothetical protein
272	 46.61	0	293051..294127	+	358	16077341	yccF	BSU02720	-	hypothetical protein
273	 47.23	0	294167..295123	-	318	16077342	yccG	BSU02730	-	hypothetical protein
274	 43.02	0	295136..295837	-	233	16077343	yccH	BSU02740	-	hypothetical protein
275	 47.10	0	295981..296721	+	246	16077344	natA	BSU02750	-	Na+ ABC transporter ATP-binding protein
276	 44.88	0	296722..297882	+	386	16077345	natB	BSU02760	-	Na+ ABC transporter membrane protein
277	 46.30	0	298018..298950	+	310	16077346	yccK	BSU02770	-	hypothetical protein
278	 39.91	0	298990..300054	-	354	16077347	ycdA	BSU02780	-	hypothetical protein
279	 47.64	0	300382..301800	+	472	16077348	ycdB	BSU02790	-	hypothetical protein
280	 45.52	0	301987..303348	+	453	16077349	ycdC	BSU02800	-	hypothetical protein
281	 42.66	0	303356..303859	-	167	16077350	ycdD	BSU02810	-	hypothetical protein
282	 43.40	0	303982..305103	+	373	16077351	rapJ	BSU02820	-	response regulator aspartate phosphatase
283	 47.75	0	305210..305986	+	258	16077352	ycdF	BSU02830	-	hypothetical protein
284	 45.91	0	306011..307696	+	561	16077353	ycdG	BSU02840	-	hypothetical protein
285	 42.29	0	307884..308843	+	319	16077354	ycdH	BSU02850	-	hypothetical protein
286	 44.11	0	308899..309594	+	231	16077355	ycdI	BSU02860	-	hypothetical protein
287	 45.55	0	309552..310394	+	280	16077356	yceA	BSU02870	-	hypothetical protein
288	 50.42	+1	310432..311373	-	313	16077357	yceB	BSU02880	-	hypothetical protein
289	 45.50	0	311711..312310	+	199	16077358	yceC	BSU02890	-	hypothetical protein
290	 45.88	0	312332..312913	+	193	16077359	yceD	BSU02900	-	hypothetical protein
291	 47.67	0	312948..313526	+	192	16077360	yceE	BSU02910	-	hypothetical protein
292	 44.44	0	313577..314350	+	257	16077361	yceF	BSU02920	-	hypothetical protein
293	 45.35	0	314435..316048	+	537	16077362	yceG	BSU02930	-	hypothetical protein
294	 45.79	0	316064..317155	+	363	16077363	yceH	BSU02940	-	hypothetical protein
295	 49.79	+1	317277..318479	+	400	16077364	yceI	BSU02950	-	hypothetical protein
296	 48.59	+1	318732..319904	-	390	16077365	yceJ	BSU02960	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.