IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2336	 42.61	0	2435238..2436110	+	290	16079394	ypuA	BSU23370	-	hypothetical protein
2337	 45.76	0	2436139..2437458	-	439	16079395	lysA	BSU23380	-	diaminopimelate decarboxylase
2338	 44.83	0	2437564..2439042	-	492	16079396	spoVAF	BSU23390	-	sporulation protein VAF
2339	 48.46	+1	2438993..2439964	-	323	16079397	spoVAE	BSU23400	-	sporulation protein VAE
2340	 47.49	0	2439966..2440982	-	338	16079398	spoVAD	BSU23410	-	stage V sporulation protein AD
2341	 41.06	0	2440995..2441447	-	150	16079399	spoVAC	BSU23420	-	sporulation protein VAC
2342	 46.48	0	2441459..2441884	-	141	16079400	spoVAB	BSU23430	-	sporulation protein VAB
2343	 42.12	0	2441894..2442496	-	200	16079401	spoVAA	BSU23440	-	sporulation protein VAA
2344	 44.79	0	2442618..2443385	-	255	16079402	sigF	BSU23450	-	sporulation sigma factor SigF
2345	 42.18	0	2443397..2443837	-	146	16079403	spoIIAB	BSU23460	-	anti-sigma F factor
2346	 44.07	0	2443834..2444187	-	117	16079404	spoIIAA	BSU23470	-	anti-anti-sigma factor (antagonist of SpoIIAB)
2347	 41.20	0	2444283..2445452	-	389	16079405	dacF	BSU23480	-	penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase)
2348	 46.57	0	2445607..2446422	-	271	16079406	punA	BSU23490	-	purine nucleoside phosphorylase
2349	 46.58	0	2446435..2447619	-	394	16079407	drm	BSU23500	-	phosphopentomutase
2350	 45.57	0	2447780..2448670	-	296	16079408	xerD	BSU23510	-	site-specific tyrosine recombinase XerD
2351	 42.00	0	2449029..2449478	-	149	16079409	fur	BSU23520	-	FUR family transcriptional regulator
2352	 40.62	0	2449591..2450235	-	214	16079410	spoIIM	BSU23530	-	required for dissolution of the septal cell wall (stage II sporulation)
2353	 42.13	0	2450336..2450551	-	71	16079411	yqkK	BSU23540	-	hypothetical protein
2354	 49.77	+1	2450651..2451970	-	439	16079412	mleA	BSU23550	-	malolactic enzyme
2355	 41.01	0	2451988..2453394	-	468	16079413	mleN	BSU23560	-	malate-H+/Na+-lactate antiporter
2356	 45.80	0	2453535..2454962	-	475	16079414	aspA	BSU23570	-	aspartate ammonia-lyase
2357	 43.64	0	2455007..2455996	-	329	16079415	ansA	BSU23580	-	L-asparaginase
2358	 46.15	0	2456178..2456528	+	116	16079416	ansR	BSU23590	-	XRE family transcriptional regulatot
2359	 46.44	0	2456537..2457421	-	294	16079417	yqxK	BSU23600	-	hypothetical protein
2360	 43.73	0	2457698..2458255	-	185	16079418	nudF	BSU23610	-	ADP-ribose pyrophosphatase
2361	 45.28	0	2458515..2459435	+	306	16079419	yqkF	BSU23620	-	hypothetical protein
2362	 34.22	-1	2459467..2459691	-	74	16079420	yqkE	BSU23630	-	hypothetical protein
2363	 45.32	0	2459853..2460770	+	305	16079421	yqkD	BSU23640	-	hypothetical protein
2364	 42.92	0	2460810..2461049	-	79	16079422	yqkC	BSU23650	-	hypothetical protein
2365	 49.07	+1	2461062..2461385	-	107	16079423	yqkB	BSU23660	-	hypothetical protein
2366	 43.90	0	2461382..2462413	-	343	16079424	yqkA	BSU23670	-	hypothetical protein
2367	 46.38	0	2462406..2462750	-	114	16079425	yqjZ	BSU23680	-	hypothetical protein
2368	 40.76	0	2462760..2463230	-	156	16079426	yqjY	BSU23690	-	hypothetical protein
2369	 46.90	0	2463416..2463754	-	112	16079427	yqjX	BSU23700	-	hypothetical protein
2370	 50.28	+1	2463751..2464989	-	412	16079428	yqjW	BSU23710	-	DNA polymerase IV
2371	 42.51	0	2465155..2465361	+	68	16079429	yqzH	BSU23720	-	hypothetical protein
2372	 46.15	0	2465910..2467142	+	410	16079430	yqjV	BSU23730	-	hypothetical protein
2373	 42.71	0	2467160..2467351	+	63	16079431	yqjU	BSU23740	-	hypothetical protein
2374	 46.25	0	2467348..2467734	-	128	16079432	yqjT	BSU23750	-	hypothetical protein
2375	 43.44	0	2467738..2468697	-	319	50812263	coaA	BSU23760	-	pantothenate kinase
2376	 47.81	0	2468769..2470115	-	448	16079434	dsdA	BSU23770	-	D-serine dehydratase
2377	 48.59	+1	2470191..2470970	-	259	16079435	yqjQ	BSU23780	-	hypothetical protein
2378	 46.88	0	2470976..2471935	-	319	16079436	yqjP	BSU23790	-	hypothetical protein
2379	 46.59	0	2472340..2473176	+	278	16079437	proI	BSU23800	-	pyrroline-5-carboxylate reductase
2380	 45.44	0	2473217..2474860	-	547	16079438	yqjN	BSU23810	-	hypothetical protein
2381	 46.21	0	2475032..2476048	+	338	16079439	yqjM	BSU23820	-	NADPH dehydrogenase NamA
2382	 45.28	0	2476158..2476919	+	253	16079440	yqjL	BSU23830	-	hypothetical protein
2383	 46.10	0	2477195..2478118	-	307	16079441	yqjK	BSU23840	-	ribonuclease Z
2384	 42.59	0	2478345..2479814	+	489	16079442	zwf	BSU23850	-	glucose-6-phosphate 1-dehydrogenase
2385	 43.97	0	2479937..2481346	-	469	50812264	yqjI	BSU23860	-	6-phosphogluconate dehydrogenase
2386	 46.18	0	2481456..2482700	-	414	16079444	yqjH	BSU23870	-	DNA polymerase IV
2387	 40.28	0	2482773..2483060	+	95	50812265	yqzJ	BSU23880	-	hypothetical protein
2388	 43.48	0	2483091..2483918	+	275	16079445	yqjG	BSU23890	-	OxaA-like protein precursor
2389	 45.95	0	2484098..2484826	+	242	50812266	yqjF	BSU23900	-	hypothetical protein
2390	 46.33	0	2484867..2485982	-	371	16079447	yqjE	BSU23910	-	hypothetical protein
2391	 48.98	+1	2486000..2487520	-	506	16079448	yqjD	BSU23920	-	hypothetical protein
2392	 43.74	0	2487517..2487939	-	140	16079449	yqjC	BSU23930	-	hypothetical protein
2393	 43.88	0	2488141..2488671	-	176	16079450	yqjB	BSU23940	-	hypothetical protein
2394	 41.28	0	2488723..2489691	-	322	16079451	yqjA	BSU23950	-	hypothetical protein
2395	 44.81	0	2489762..2490484	-	240	16079452	yqiZ	BSU23960	-	hypothetical protein
2396	 42.88	0	2490477..2491136	-	219	16079453	yqiY	BSU23970	-	hypothetical protein
2397	 41.41	0	2491217..2491984	-	255	16079454	yqiX	BSU23980	-	hypothetical protein
2398	 45.89	0	2492253..2492690	-	145	16079455	yqiW	BSU23990	-	hypothetical protein
2399	 44.97	0	2492853..2493746	+	297	16079456	bmrU	BSU24000	-	multidrug resistance protein
2400	 44.53	0	2493847..2495016	+	389	16079457	bmr	BSU24010	-	multidrug-efflux transporter
2401	 40.02	0	2495089..2495925	+	278	50812267	bmrR	BSU24020	-	MerR family transcriptional regulator
2402	 46.12	0	2495987..2497261	-	424	16079459	bkdB	BSU24030	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2403	 48.48	+1	2497284..2498267	-	327	16079460	bkdAB	BSU24040	-	branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
2404	 47.73	0	2498281..2499273	-	330	16079461	bkdAA	BSU24050	-	branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
2405	 48.11	+1	2499347..2500720	-	457	16079462	lpdV	BSU24060	-	dihydrolipoamide dehydrogenase
2406	 45.70	0	2500741..2501832	-	363	16079463	buk	BSU24070	-	butyrate kinase
2407	 47.21	0	2501851..2502945	-	364	16079464	bcd	BSU24080	-	leucine dehydrogenase
2408	 48.11	+1	2502957..2503856	-	299	16079465	ptb	BSU24090	-	phosphate butyryltransferase
2409	 45.17	0	2503981..2506059	-	692	16079466	bkdR	BSU24100	-	transcriptional regulator (sigma-L-dependent)
2410	 44.73	0	2506212..2506448	+	78	16079467	yqzF	BSU24110	-	hypothetical protein
2411	 49.78	+1	2506490..2507395	-	301	16079468	yqiQ	BSU24120	-	hypothetical protein
2412	 47.43	0	2507413..2508831	-	472	16079469	prpD	BSU24130	-	2-methylcitrate dehydratase
2413	 47.36	0	2508846..2509964	-	372	16079470	mmgD	BSU24140	-	citrate synthase 3
2414	 47.23	0	2509998..2511134	-	378	16079471	mmgC	BSU24150	-	acyl-CoA dehydrogenase
2415	 46.94	0	2511162..2511896	-	244	16079472	mmgB	BSU24160	-	3-hydroxybutyryl-CoA dehydrogenase
2416	 51.78	+1	2512046..2513227	-	393	16079473	mmgA	BSU24170	-	acetyl-CoA acetyltransferase
2417	 46.81	0	2513365..2514084	-	239	16079474	yqiK	BSU24180	-	hypothetical protein
2418	 48.15	+1	2514163..2514783	-	206	16079475	yqiI	BSU24190	-	hypothetical protein
2419	 44.56	0	2514798..2515091	-	97	16079476	yqiH	BSU24200	-	hypothetical protein
2420	 47.63	0	2515623..2516741	+	372	16079477	yqiG	BSU24210	-	hypothetical protein
2421	 45.02	0	2517257..2518060	-	267	16079478	spo0A	BSU24220	-	two-component response regulator
2422	 40.61	0	2518336..2519613	-	425	16079479	spoIVB	BSU24230	-	serine peptidase of the SA clan
2423	 45.64	0	2519788..2521518	-	576	16079480	recN	BSU24240	-	DNA repair and genetic recombination
2424	 44.44	0	2521555..2522004	-	149	16079481	ahrC	BSU24250	-	arginine repressor
2425	 47.90	0	2522139..2522948	-	269	16079482	yqxC	BSU24260	-	hypothetical protein
2426	 47.69	0	2522945..2524846	-	633	16079483	dxs	BSU24270	-	1-deoxy-D-xylulose-5-phosphate synthase
2427	 46.52	0	2525093..2525911	-	272	16079484	yqiD	BSU24280	-	hypothetical protein
2428	 42.42	0	2525901..2526065	-	54	16079485	yqiC	BSU24290	-	hypothetical protein
2429	 44.47	0	2526151..2527497	-	448	16079486	xseA	BSU24300	-	exodeoxyribonuclease VII large subunit
2430	 45.54	0	2527635..2528486	-	283	16079487	folD	BSU24310	-	methenyltetrahydrofolate cyclohydrolase
2431	 42.93	0	2528498..2528893	-	131	16079488	nusB	BSU24320	-	transcription antitermination protein NusB
2432	 44.36	0	2529157..2529564	-	135	16079489	yqhY	BSU24330	-	hypothetical protein
2433	 45.31	0	2529585..2530937	-	450	16079490	accC	BSU24340	-	acetyl-CoA carboxylase biotin carboxylase subunit
2434	 44.38	0	2530949..2531428	-	159	16079491	accB	BSU24350	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
2435	 42.31	0	2531584..2532240	-	218	16079492	spoIIIAH	BSU24360	-	mutants block sporulation after engulfment (stage III sporulation)
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.