IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2273	 41.93	0	2381117..2382163	-	348	16079331	hepT	BSU22740	-	heptaprenyl diphosphate synthase component II
2274	 45.44	0	2382105..2382806	-	233	16079332	ubiE	BSU22750	-	ubiquinone/menaquinone biosynthesis methyltransferase
2275	 39.02	0	2382813..2383568	-	251	16079333	hepS	BSU22760	-	heptaprenyl diphosphate synthase component I
2276	 42.54	0	2383731..2383958	-	75	16079334	mtrB	BSU22770	-	transcription attenuation protein MtrB
2277	 45.72	0	2383980..2384552	-	190	16079335	folE	BSU22780	-	GTP cyclohydrolase I
2278	 40.86	0	2384740..2385018	-	92	16079336	hbs	BSU22790	-	non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component
2279	 46.86	0	2385392..2386870	-	492	16079337	spoIVA	BSU22800	-	required for proper spore cortex formation and coat assembly (stage IV sporulation)
2280	 41.90	0	2387051..2387785	-	244	16079338	yphF	BSU22810	-	hypothetical protein
2281	 40.20	0	2387807..2388010	-	67	16079339	yphE	BSU22820	-	hypothetical protein
2282	 44.61	0	2388348..2389385	-	345	16079340	gpsA	BSU22830	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2283	 43.71	0	2389403..2390713	-	436	16079341	engA	BSU22840	-	GTP-binding protein EngA
2284	 43.18	0	2391058..2391951	-	297	16079342	seaA	BSU22850	-	involved in spore envelope assembly
2285	 40.00	0	2391948..2392547	-	199	16079343	yphA	BSU22860	-	hypothetical protein
2286	 48.35	+1	2392799..2393857	-	352	161511069	ypgA	BSU22870	-	isopentenyl pyrophosphate isomerase
2287	 42.04	0	2393861..2395009	-	382	16079345	rpsA	BSU22880	-	30S ribosomal protein S1
2288	 45.63	0	2395242..2395916	-	224	16079346	cmk	BSU22890	-	cytidylate kinase
2289	 33.33	-2	2395995..2396171	-	58	16079347	ypfB	BSU22900	-	hypothetical protein
2290	 41.28	0	2396216..2396869	-	217	16079348	ypfA	BSU22910	-	hypothetical protein
2291	 39.76	0	2396962..2398314	-	450	16079349	ypeB	BSU22920	-	hypothetical protein
2292	 45.21	0	2398349..2399266	-	305	16079350	sleB	BSU22930	-	spore cortex-lytic enzyme
2293	 40.64	0	2399405..2400061	-	218	16079351	ypdC	BSU22940	-	hypothetical protein
2294	 41.74	0	2400181..2401155	-	324	16079352	ypdA	BSU22950	-	hypothetical protein
2295	 44.42	0	2401264..2402544	-	426	16079353	gudB	BSU22960	-	glutamate dehydrogenase
2296	 42.22	0	2402700..2403284	-	194	16079354	ypbH	BSU22970	-	adaptor protein
2297	 45.26	0	2403443..2404222	-	259	16079355	ypbG	BSU22980	-	hypothetical protein
2298	 39.19	0	2404308..2404751	-	147	16079356	ypbF	BSU22990	-	hypothetical protein
2299	 41.63	0	2404814..2405536	-	240	16079357	ypbE	BSU23000	-	hypothetical protein
2300	 41.40	0	2405487..2406056	-	189	16079358	ypbD	BSU23010	-	hypothetical protein
2301	 45.74	0	2406116..2407606	-	496	16079359	recQ	BSU23020	-	ATP-dependent DNA helicase
2302	 45.04	0	2407599..2408657	-	352	16079360	ypbB	BSU23030	-	hypothetical protein
2303	 45.38	0	2408923..2409171	+	82	16079361	fer	BSU23040	-	ferredoxin
2304	 40.66	0	2409211..2409783	-	190	16079362	ypaA	BSU23050	-	hypothetical protein
2305	 48.48	+1	2409889..2410053	-	54	16079363	ypzE	BSU23060	-	hypothetical protein
2306	 42.78	0	2410280..2411857	+	525	16079364	serA	BSU23070	-	D-3-phosphoglycerate dehydrogenase
2307	 42.84	0	2411900..2412667	-	255	16079365	aroD	BSU23080	-	3-dehydroquinate dehydratase
2308	 40.83	0	2412779..2413885	-	368	16079366	rsiX	BSU23090	-	negative regulation of sigma-X activity
2309	 40.34	0	2413821..2414405	-	194	16079367	sigX	BSU23100	-	RNA polymerase sigma factor SigX
2310	 43.11	0	2414609..2416378	-	589	16079368	resE	BSU23110	-	two-component sensor histidine kinase
2311	 43.71	0	2416375..2417097	-	240	16079369	resD	BSU23120	-	two-component response regulator
2312	 46.08	0	2417178..2418236	-	352	16079370	resC	BSU23130	-	required for cytochrome c synthesis
2313	 44.20	0	2418372..2420000	-	542	16079371	resB	BSU23140	-	required for cytochrome c synthesis
2314	 42.67	0	2419997..2420542	-	181	16079372	resA	BSU23150	-	thiol-disulfide oxidoreductase
2315	 47.10	0	2420674..2421363	-	229	16079373	rluB	BSU23160	-	pseudouridine synthase
2316	 45.74	0	2421455..2421994	-	179	16079374	spmB	BSU23170	-	spore maturation protein
2317	 45.35	0	2421999..2422589	-	196	16079375	spmA	BSU23180	-	spore maturation protein
2318	 41.25	0	2422577..2423725	-	382	16079376	dacB	BSU23190	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
2319	 45.56	0	2423848..2424387	-	179	16079377	ypuI	BSU23200	-	hypothetical protein
2320	 44.78	0	2424442..2425035	-	197	16079378	ypuH	BSU23210	-	hypothetical protein
2321	 40.34	0	2425025..2425780	-	251	16079379	scpA	BSU23220	-	segregation and condensation protein A
2322	 43.62	0	2426061..2426585	+	174	16079380	ypuF	BSU23230	-	hypothetical protein
2323	 40.27	0	2426599..2426973	-	124	16079381	ribT	BSU23240	-	reductase
2324	 42.58	0	2427086..2427550	-	154	16079382	ribH	BSU23250	-	riboflavin synthase subunit beta
2325	 46.12	0	2427583..2428779	-	398	16079383	ribA	BSU23260	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
2326	 40.12	0	2428794..2429441	-	215	16079384	ribE	BSU23270	-	riboflavin synthase subunit alpha
2327	 47.79	0	2429452..2430537	-	361	16079385	ribD	BSU23280	-	riboflavin-specific deaminase
2328	 33.99	-2	2430519..2430671	-	50	16079386	ypuE	BSU23290	-	hypothetical protein
2329	 37.10	-1	2430930..2431274	-	114	16079387	ypuD	BSU23300	-	hypothetical protein
2330	 41.98	0	2431509..2432063	-	184	16079388	sipS	BSU23310	-	type I signal peptidase
2331	 37.55	-1	2432330..2432566	+	78	16079389	ypzC	BSU23320	-	hypothetical protein
2332	 41.54	0	2432969..2433358	-	129	16079390	ypuC	BSU23330	-	hypothetical protein
2333	 48.04	+1	2433336..2433539	-	67	16079391	ypuB	BSU23340	-	hypothetical protein
2334	 33.80	-2	2434205..2434417	+	70	16079392	ypzD	BSU23350	-	hypothetical protein
2335	 46.30	0	2434553..2434984	-	143	16079393	ppiB	BSU23360	-	peptidyl-prolyl isomerase
2336	 42.61	0	2435238..2436110	+	290	16079394	ypuA	BSU23370	-	hypothetical protein
2337	 45.76	0	2436139..2437458	-	439	16079395	lysA	BSU23380	-	diaminopimelate decarboxylase
2338	 44.83	0	2437564..2439042	-	492	16079396	spoVAF	BSU23390	-	sporulation protein VAF
2339	 48.46	+1	2438993..2439964	-	323	16079397	spoVAE	BSU23400	-	sporulation protein VAE
2340	 47.49	0	2439966..2440982	-	338	16079398	spoVAD	BSU23410	-	stage V sporulation protein AD
2341	 41.06	0	2440995..2441447	-	150	16079399	spoVAC	BSU23420	-	sporulation protein VAC
2342	 46.48	0	2441459..2441884	-	141	16079400	spoVAB	BSU23430	-	sporulation protein VAB
2343	 42.12	0	2441894..2442496	-	200	16079401	spoVAA	BSU23440	-	sporulation protein VAA
2344	 44.79	0	2442618..2443385	-	255	16079402	sigF	BSU23450	-	sporulation sigma factor SigF
2345	 42.18	0	2443397..2443837	-	146	16079403	spoIIAB	BSU23460	-	anti-sigma F factor
2346	 44.07	0	2443834..2444187	-	117	16079404	spoIIAA	BSU23470	-	anti-anti-sigma factor (antagonist of SpoIIAB)
2347	 41.20	0	2444283..2445452	-	389	16079405	dacF	BSU23480	-	penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase)
2348	 46.57	0	2445607..2446422	-	271	16079406	punA	BSU23490	-	purine nucleoside phosphorylase
2349	 46.58	0	2446435..2447619	-	394	16079407	drm	BSU23500	-	phosphopentomutase
2350	 45.57	0	2447780..2448670	-	296	16079408	xerD	BSU23510	-	site-specific tyrosine recombinase XerD
2351	 42.00	0	2449029..2449478	-	149	16079409	fur	BSU23520	-	FUR family transcriptional regulator
2352	 40.62	0	2449591..2450235	-	214	16079410	spoIIM	BSU23530	-	required for dissolution of the septal cell wall (stage II sporulation)
2353	 42.13	0	2450336..2450551	-	71	16079411	yqkK	BSU23540	-	hypothetical protein
2354	 49.77	+1	2450651..2451970	-	439	16079412	mleA	BSU23550	-	malolactic enzyme
2355	 41.01	0	2451988..2453394	-	468	16079413	mleN	BSU23560	-	malate-H+/Na+-lactate antiporter
2356	 45.80	0	2453535..2454962	-	475	16079414	aspA	BSU23570	-	aspartate ammonia-lyase
2357	 43.64	0	2455007..2455996	-	329	16079415	ansA	BSU23580	-	L-asparaginase
2358	 46.15	0	2456178..2456528	+	116	16079416	ansR	BSU23590	-	XRE family transcriptional regulatot
2359	 46.44	0	2456537..2457421	-	294	16079417	yqxK	BSU23600	-	hypothetical protein
2360	 43.73	0	2457698..2458255	-	185	16079418	nudF	BSU23610	-	ADP-ribose pyrophosphatase
2361	 45.28	0	2458515..2459435	+	306	16079419	yqkF	BSU23620	-	hypothetical protein
2362	 34.22	-1	2459467..2459691	-	74	16079420	yqkE	BSU23630	-	hypothetical protein
2363	 45.32	0	2459853..2460770	+	305	16079421	yqkD	BSU23640	-	hypothetical protein
2364	 42.92	0	2460810..2461049	-	79	16079422	yqkC	BSU23650	-	hypothetical protein
2365	 49.07	+1	2461062..2461385	-	107	16079423	yqkB	BSU23660	-	hypothetical protein
2366	 43.90	0	2461382..2462413	-	343	16079424	yqkA	BSU23670	-	hypothetical protein
2367	 46.38	0	2462406..2462750	-	114	16079425	yqjZ	BSU23680	-	hypothetical protein
2368	 40.76	0	2462760..2463230	-	156	16079426	yqjY	BSU23690	-	hypothetical protein
2369	 46.90	0	2463416..2463754	-	112	16079427	yqjX	BSU23700	-	hypothetical protein
2370	 50.28	+1	2463751..2464989	-	412	16079428	yqjW	BSU23710	-	DNA polymerase IV
2371	 42.51	0	2465155..2465361	+	68	16079429	yqzH	BSU23720	-	hypothetical protein
2372	 46.15	0	2465910..2467142	+	410	16079430	yqjV	BSU23730	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.