IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
153	 43.70	0	156611..157324	+	237	16077221	cwlD	BSU01530	-	N-acetylmuramoyl-L-alanine amidase
154	 44.38	0	157420..158478	+	352	16077222	ybaL	BSU01540	-	hypothetical protein
155	 37.10	-1	158514..159071	-	185	16077223	gerD	BSU01550	-	germination response to L-alanine and to the combination of glucose, fructose, L-asparagine, and KCl (early stage)
156	 38.86	0	159181..159777	+	198	16077224	kbaA	BSU01560	-	activation of the KinB signaling pathway to sporulation
157	 41.96	0	159778..160542	-	254	16077225	ybaN	BSU01570	-	hypothetical protein
158	 43.01	0	177082..178518	+	478	16077226	ybaR	BSU01580	-	hypothetical protein
159	 44.01	0	178733..179584	+	283	16077227	ybaS	BSU01590	-	hypothetical protein
160	 45.61	0	179594..180163	-	189	16077228	ybbA	BSU01600	-	hypothetical protein
161	 47.51	0	180168..181352	-	394	16077229	feuC	BSU01610	-	integral membrane protein
162	 45.27	0	181345..182349	-	334	16077230	feuB	BSU01620	-	integral membrane protein
163	 40.88	0	182368..183321	-	317	16077231	feuA	BSU01630	-	iron-binding protein
164	 42.58	0	183412..185001	-	529	16077232	ybbB	BSU01640	-	hypothetical protein
165	 43.94	0	185192..186436	-	414	16077233	ybbC	BSU01650	-	hypothetical protein
166	 45.31	0	186450..188378	-	642	16077234	ybbD	BSU01660	-	hypothetical protein
167	 44.72	0	188406..189731	-	441	16077235	ybbE	BSU01670	-	hypothetical protein
168	 47.37	0	189788..191155	-	455	50812175	ybbF	BSU01680	-	hypothetical protein
169	 47.54	0	191181..192032	-	283	16077237	ybbH	BSU01690	-	hypothetical protein
170	 47.76	0	192049..192963	-	304	16077238	murQ	BSU01700	-	N-acetylmuramic acid-6-phosphate etherase
171	 45.48	0	193134..193553	-	139	16077239	ybbJ	BSU01710	-	hypothetical protein
172	 47.81	0	193566..194021	-	151	16077240	ybbK	BSU01720	-	hypothetical protein
173	 40.60	0	194838..195401	+	187	16077241	sigW	BSU01730	-	RNA polymerase sigma factor SigW
174	 45.14	0	195415..196041	+	208	16077242	ybbM	BSU01740	-	hypothetical protein
175	 46.59	0	196202..197023	+	273	16077243	ybbP	BSU01750	-	hypothetical protein
176	 42.49	0	197016..198467	+	483	16077244	ybbR	BSU01760	-	hypothetical protein
177	 47.66	0	198486..199832	+	448	16077245	ybbT	BSU01770	-	hypothetical protein
178	 47.03	0	200263..202065	+	600	16077246	glmS	BSU01780	-	D-fructose-6-phosphate amidotransferase
179	 39.01	0	202112..202252	+	46	16077247	ybbU	BSU01790	-	hypothetical protein
180	 36.95	-1	202533..203444	-	303	16077248	alkA	BSU01800	-	DNA-3-methyladenine glycosylase
181	 35.38	-1	203715..204350	+	211	16077249	adaA	BSU01810	-	methylphosphotriester-DNA alkyltransferase /transcriptional regulator
182	 41.67	0	204337..204876	+	179	16077250	adaB	BSU01820	-	O6-methylguanine-DNA methyltransferase
183	 41.24	0	205395..206912	+	505	16077251	ndhF	BSU01830	-	NADH dehydrogenase subunit 5
184	 39.51	0	206927..207169	+	80	16077252	ybcC	BSU01840	-	hypothetical protein
185	 42.69	0	207166..209430	+	754	16077253	ybcD	BSU01850	-	hypothetical protein
186	 36.17	-1	209619..210146	+	175	16077254	ybcF	BSU01860	-	hypothetical protein
187	 30.58	-2	210210..210500	+	96	16077255	ybcH	BSU01870	-	hypothetical protein
188	 35.73	-1	210558..210932	+	124	16077256	ybcI	BSU01880	-	hypothetical protein
189	 44.42	0	211845..213017	+	390	16077257	ybcL	BSU01890	-	hypothetical protein
190	 47.30	0	213141..213455	+	104	16077258	ybcM	BSU01900	-	hypothetical protein
191	 44.64	0	213926..214093	+	55	16077259	ybcO	BSU01910	-	hypothetical protein
192	 39.25	0	214160..215392	+	410	50812176	ybcP	BSU01920	-	hypothetical protein
193	 37.28	-1	215389..215946	+	185	16077262	ybcS	BSU01930	-	hypothetical protein
194	 37.50	-1	215943..216878	+	311	16077263	ybcT	BSU01940	-	hypothetical protein
195	 41.94	0	216897..217616	+	239	16077264	ybdA	BSU01950	-	hypothetical protein
196	 37.27	-1	217681..219027	+	448	16077265	ybdB	BSU01960	-	hypothetical protein
197	 40.82	0	219074..219487	+	137	16077266	ybdD	BSU01970	-	hypothetical protein
198	 37.32	-1	219593..220018	+	141	16077267	ybdE	BSU01980	-	hypothetical protein
199	 40.97	0	220264..221154	+	296	16077268	ybdG	BSU01990	-	hypothetical protein
200	 39.88	0	221246..221917	+	223	16077269	ybdJ	BSU02000	-	hypothetical protein
201	 39.46	0	221938..222900	+	320	16077270	ybdK	BSU02010	-	hypothetical protein
202	 48.21	+1	222970..223164	+	64	16077271	ybdL	BSU02020	-	hypothetical protein
203	 41.76	0	223207..223977	-	256	16077272	ybdM	BSU02030	-	hypothetical protein
204	 40.91	0	224063..224920	-	285	16077273	ybdN	BSU02040	-	hypothetical protein
205	 43.12	0	225052..226236	+	394	16077274	ybdO	BSU02050	-	hypothetical protein
206	 45.93	0	226554..227942	+	462	16077275	ybxG	BSU02060	-	hypothetical protein
207	 36.55	-1	228054..228302	+	82	16077276	csgA	BSU02070	-	sporulation-specific SASP protein
208	 40.10	0	228319..228510	+	63	16077277	ybxH	BSU02080	-	hypothetical protein
209	 44.90	0	228537..229340	-	267	16077278	ybxI	BSU02090	-	hypothetical protein
210	 48.56	+1	229513..230766	+	417	16077279	cypC	BSU02100	-	fatty acid beta-hydroxylating cytochrome P450
211	 42.15	0	230807..231067	-	86	16077280	ybyB	BSU02110	-	hypothetical protein
212	 45.56	0	231336..232955	+	539	16077281	ybeC	BSU02120	-	hypothetical protein
213	 45.46	0	233002..233883	-	293	16077282	glpQ	BSU02130	-	glycerophosphoryl diester phosphodiesterase
214	 46.44	0	233982..235316	-	444	16077283	glpT	BSU02140	-	glycerol-3-phosphate permease
215	 36.55	-1	235613..235861	+	82	16077284	ybeF	BSU02150	-	hypothetical protein
216	 44.23	0	235953..236870	+	305	16077285	ybfA	BSU02160	-	hypothetical protein
217	 50.84	+1	236867..238117	+	416	16077286	ybfB	BSU02170	-	hypothetical protein
218	 33.33	-2	238152..238436	-	94	16077287	ybfE	BSU02180	-	hypothetical protein
219	 29.17	-2	238632..239543	-	303	16077288	ybfF	BSU02190	-	hypothetical protein
220	 41.93	0	239632..241830	-	732	16077289	ybfG	BSU02200	-	hypothetical protein
221	 44.52	0	241905..242825	-	306	16077290	ybfH	BSU02210	-	hypothetical protein
222	 43.84	0	242822..243649	-	275	16077291	ybfI	BSU02220	-	hypothetical protein
223	 49.18	+1	243880..245034	+	384	16077292	purT	BSU02230	-	phosphoribosylglycinamide formyltransferase 2
224	 46.60	0	245178..246119	+	313	16077293	mpr	BSU02240	-	extracellular metalloprotease
225	 42.61	0	246082..246480	+	132	16077294	ybfJ	BSU02250	-	hypothetical protein
226	 47.59	0	246646..247536	+	296	16077295	ybfK	BSU02260	-	hypothetical protein
227	 44.19	0	247732..248265	+	177	16077296	pssA	BSU02270	-	phosphatidylserine synthase
228	 40.49	0	248256..248744	+	162	16077297	ybfM	BSU02280	-	hypothetical protein
229	 46.72	0	248737..249528	+	263	16077298	psd	BSU02290	-	phosphatidylserine decarboxylase
230	 44.44	0	249583..249861	+	92	16077299	ybfN	BSU02300	-	hypothetical protein
231	 43.18	0	249967..251307	+	446	16077300	ybfO	BSU02310	-	hypothetical protein
232	 39.75	0	251415..252302	+	295	16077301	ybfP	BSU02320	-	hypothetical protein
233	 44.17	0	252502..253470	+	322	16077302	ybfQ	BSU02330	-	hypothetical protein
234	 45.54	0	253506..254750	-	414	16077303	gltP	BSU02340	-	proton/glutamate symport protein
235	 48.52	+1	254895..256790	-	631	16077304	gamP	BSU02350	-	phosphotransferase system (PTS) glucosamine-specific enzyme IICBA component
236	 44.93	0	256811..257560	-	249	16077305	gamA	BSU02360	-	glucosamine-6-phosphate isomerase
237	 43.64	0	257779..258486	+	235	16077306	ybgA	BSU02370	-	hypothetical protein
238	 44.57	0	258520..258795	+	91	16077307	ybgB	BSU02380	-	hypothetical protein
239	 48.27	+1	259004..260074	+	356	16077308	ybgE	BSU02390	-	branched-chain amino acid aminotransferase
240	 49.04	+1	260111..261523	-	470	16077309	ybgF	BSU02400	-	hypothetical protein
241	 50.53	+1	261644..262591	-	315	16077310	mmuM	BSU02410	-	homocysteine methyltransferase
242	 47.13	0	262720..264111	-	463	16077311	ybgH	BSU02420	-	hypothetical protein
243	 49.39	+1	264181..265164	-	327	16077312	ybgJ	BSU02430	-	glutaminase
244	 45.02	0	265536..266699	+	387	16077313	ycbA	BSU02440	-	hypothetical protein
245	 46.67	0	266710..267654	+	314	16077314	ycbB	BSU02450	-	hypothetical protein
246	 48.54	+1	267881..268807	+	308	16077315	ycbC	BSU02460	-	5-dehydro-4-deoxyglucarate dehydratase
247	 51.40	+1	268837..270303	+	488	16077316	ycbD	BSU02470	-	hypothetical protein
248	 49.49	+1	270387..271754	+	455	16077317	ycbE	BSU02480	-	hypothetical protein
249	 52.49	+1	271791..273158	+	455	16077318	ycbF	BSU02490	-	hypothetical protein
250	 45.87	0	273228..273929	+	233	16077319	ycbG	BSU02500	-	hypothetical protein
251	 52.71	+2	274020..275552	+	510	16077320	ycbH	BSU02510	-	hypothetical protein
252	 47.77	0	275829..276749	+	306	16077321	ycbJ	BSU02520	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.