IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1950	 47.86	0	2123586..2123819	-	77	16079008	yojC	BSU19500	-	hypothetical protein
1951	 53.59	+2	2123728..2123964	-	78	16079009	yojB	BSU19510	-	hypothetical protein
1952	 45.84	0	2124049..2125383	-	444	16079010	yojA	BSU19520	-	hypothetical protein
1953	 42.56	0	2125748..2126137	+	129	16079011	yodA	BSU19530	-	hypothetical protein
1954	 46.02	0	2126544..2126882	-	112	16079012	yodB	BSU19540	-	hypothetical protein
1955	 42.53	0	2127012..2127620	+	202	16079013	yodC	BSU19550	-	hypothetical protein
1956	 47.60	0	2127663..2128265	-	200	16079014	yodD	BSU19560	-	hypothetical protein
1957	 45.29	0	2128281..2129192	-	303	16079015	yodE	BSU19570	-	hypothetical protein
1958	 45.14	0	2129576..2131066	+	496	16079016	yodF	BSU19580	-	hypothetical protein
1959	 41.68	0	2131101..2132501	-	466	16079017	ctpA	BSU19590	-	carboxy-terminal processing protease
1960	 44.16	0	2132654..2133355	+	233	16079018	yodH	BSU19600	-	hypothetical protein
1961	 48.02	+1	2133443..2133694	+	83	16079019	yodI	BSU19610	-	hypothetical protein
1962	 41.97	0	2133765..2134586	-	273	16079020	yodJ	BSU19620	-	hypothetical protein
1963	 41.31	0	2134669..2135370	-	233	16079021	deoD	BSU19630	-	purine nucleoside phosphorylase
1964	 43.08	0	2135737..2136054	-	105	16079022	yodL	BSU19640	-	hypothetical protein
1965	 41.83	0	2136112..2136723	-	203	16079023	yodM	BSU19650	-	hypothetical protein
1966	 36.72	-1	2136801..2136977	-	58	16079024	yozD	BSU19660	-	hypothetical protein
1967	 37.44	-1	2137236..2137916	-	226	16079025	yodN	BSU19670	-	hypothetical protein
1968	 40.89	0	2138067..2138291	-	74	16079026	yozE	BSU19680	-	hypothetical protein
1969	 45.06	0	2138652..2140067	-	471	16079027	kamA	BSU19690	-	lysine 2,3-aminomutase
1970	 45.65	0	2140096..2140923	-	275	16079028	yodP	BSU19700	-	hypothetical protein
1971	 47.29	0	2140901..2142211	-	436	16079029	yodQ	BSU19710	-	acetylornithine deacetylase
1972	 45.57	0	2142220..2142873	-	217	16079030	yodR	BSU19720	-	hypothetical protein
1973	 50.00	+1	2142858..2143547	-	229	16079031	yodS	BSU19730	-	hypothetical protein
1974	 46.07	0	2143554..2144888	-	444	16079032	yodT	BSU19740	-	hypothetical protein
1975	 41.03	0	2145211..2145990	-	259	16079033	cgeE	BSU19750	-	involved in maturation of the outermost layer of the spore
1976	 40.36	0	2146019..2147299	-	426	16079034	cgeD	BSU19760	-	involved in maturation of the outermost layer of the spore
1977	 38.89	0	2147364..2147669	-	101	16079035	cgeC	BSU19770	-	involved in maturation of the outermost layer of the spore
1978	 41.04	0	2147874..2148275	+	133	16079036	cgeA	BSU19780	-	involved in maturation of the outermost layer of the spore
1979	 42.87	0	2148282..2149235	+	317	16079037	cgeB	BSU19790	-	involved in maturation of the outermost layer of the spore
1980	 44.04	0	2149306..2150454	-	382	16079038	phy	BSU19800	-	phytase
1981	 44.13	0	2150824..2151249	+	141	16079039	yodU	BSU19810	-	hypothetical protein
1982	 32.20	-2	2151284..2151460	-	58	16079040	yotN	BSU19820	-	hypothetical protein
1983	 35.20	-1	2151463..2152050	-	195	16079041	yotM	BSU19830	-	hypothetical protein
1984	 32.92	-2	2152125..2152367	+	80	16079042	yotL	BSU19840	-	hypothetical protein
1985	 34.41	-1	2152369..2152554	-	61	16079043	yotK	BSU19850	-	hypothetical protein
1986	 30.52	-2	2152638..2152850	-	70	16079044	yotJ	BSU19860	-	hypothetical protein
1987	 29.75	-2	2152916..2153278	-	120	16079045	yotI	BSU19870	-	hypothetical protein
1988	 32.18	-2	2153275..2153448	-	57	16079046	yotH	BSU19880	-	hypothetical protein
1989	 31.45	-2	2153464..2153781	-	105	16079047	yotG	BSU19890	-	hypothetical protein
1990	 26.92	-2	2153794..2153871	-	25	16079048	yotF	BSU19900	-	hypothetical protein
1991	 35.37	-1	2153903..2154049	-	48	16079049	yotE	BSU19910	-	hypothetical protein
1992	 31.06	-2	2154085..2154216	-	43	16079050	yotD	BSU19920	-	hypothetical protein
1993	 32.29	-2	2154256..2154447	-	63	16079051	yotC	BSU19930	-	hypothetical protein
1994	 35.99	-1	2154491..2155318	-	275	16079052	yotB	BSU19940	-	hypothetical protein
1995	 37.90	-1	2155437..2155655	+	72	16079053	sspC	BSU19950	-	small acid-soluble spore protein (alpha/beta-type SASP)
1996	 40.91	0	2155846..2155911	-	21	16079054	yosZ	BSU19960	-	hypothetical protein
1997	 31.36	-2	2155955..2156308	-	117	16079055	yosX	BSU19970	-	hypothetical protein
1998	 34.21	-1	2156539..2156880	-	113	16079056	yosW	BSU19980	-	hypothetical protein
1999	 31.62	-2	2157027..2157317	-	96	16079057	yosV	BSU19990	-	hypothetical protein
2000	 27.24	-2	2157637..2157882	+	81	16079058	yosU	BSU20000	-	hypothetical protein
2001	 33.56	-2	2157922..2158371	-	149	16079059	yosT	BSU20010	-	hypothetical protein
2002	 41.49	0	2158466..2158894	-	142	16079060	yosS	BSU20020	-	hypothetical protein
2003	 37.04	-1	2158940..2159182	-	80	16079061	yosR	BSU20030	-	hypothetical protein
2004	 38.43	-1	2159179..2160976	-	329	50812253	nrdF	BSU20040	-	ribonucleotide-diphosphate reductase subunit beta
2005	 34.48	-1	2159763..2160284	-	173	16079062	yosQ	BSU20050	-	hypothetical protein
2006	 37.10	-1	2161306..2164812	-	1084	50812254	yosN	BSU20060	-	hypothetical protein
2007	 34.36	-1	2164775..2165164	-	129	16079066	nrdI	BSU20070	-	ribonucleotide reductase stimulatory protein
2008	 35.88	-1	2165170..2165523	-	117	16079067	yosL	BSU20080	-	hypothetical protein
2009	 42.29	0	2165611..2165811	-	66	16079068	yosK	BSU20090	-	hypothetical protein
2010	 38.46	-1	2165856..2166050	-	64	16079069	yosJ	BSU20100	-	hypothetical protein
2011	 33.33	-2	2166071..2166205	-	44	16079070	yosI	BSU20110	-	hypothetical protein
2012	 38.00	-1	2166237..2166707	-	156	16079071	yosH	BSU20120	-	hypothetical protein
2013	 33.61	-2	2166768..2167130	-	120	16079072	yosG	BSU20130	-	hypothetical protein
2014	 32.54	-2	2167173..2167298	-	41	16079073	yosF	BSU20140	-	hypothetical protein
2015	 31.90	-2	2167312..2167659	-	115	16079074	yosE	BSU20150	-	hypothetical protein
2016	 38.38	-1	2167674..2168069	-	131	16079075	yosD	BSU20160	-	hypothetical protein
2017	 35.36	-1	2168108..2168650	-	180	16079076	yosC	BSU20170	-	hypothetical protein
2018	 35.56	-1	2168695..2168874	-	59	16079077	yosB	BSU20180	-	hypothetical protein
2019	 44.17	0	2169005..2169124	+	39	16079078	yosA	BSU20190	-	hypothetical protein
2020	 30.52	-2	2169228..2169440	-	70	16079079	yorZ	BSU20200	-	hypothetical protein
2021	 30.60	-2	2169507..2169689	-	60	16079080	yorY	BSU20210	-	hypothetical protein
2022	 35.96	-1	2169702..2169929	-	75	16079081	yorX	BSU20220	-	hypothetical protein
2023	 34.15	-1	2169969..2170334	-	121	16079082	yorW	BSU20230	-	hypothetical protein
2024	 35.16	-1	2170337..2170555	-	72	16079083	yorV	BSU20240	-	hypothetical protein
2025	 36.19	-1	2170599..2171930	-	443	16079084	mtbP	BSU20250	-	modification methylase Bsu
2026	 30.00	-2	2171979..2172098	-	39	16079085	yorT	BSU20260	-	hypothetical protein
2027	 31.98	-2	2172130..2172648	-	172	16079086	yorS	BSU20270	-	hypothetical protein
2028	 35.74	-1	2172657..2173154	-	165	16079087	yorR	BSU20280	-	hypothetical protein
2029	 35.26	-1	2173154..2173309	-	51	16079088	yorQ	BSU20290	-	hypothetical protein
2030	 36.57	-1	2173302..2173517	-	71	16079089	yorP	BSU20300	-	hypothetical protein
2031	 34.34	-1	2173550..2173747	-	65	16079090	yorO	BSU20310	-	hypothetical protein
2032	 36.67	-1	2173783..2173932	-	49	16079091	yorN	BSU20320	-	hypothetical protein
2033	 32.64	-2	2174048..2174764	-	238	16079092	yorM	BSU20330	-	hypothetical protein
2034	 35.40	-1	2174792..2178709	-	1305	16079093	yorL	BSU20340	-	hypothetical protein
2035	 34.14	-1	2178722..2180452	-	576	16079094	yorK	BSU20350	-	hypothetical protein
2036	 34.39	-1	2180452..2181588	-	378	16079095	yorJ	BSU20360	-	hypothetical protein
2037	 33.86	-2	2181604..2183118	-	504	16079096	yorI	BSU20370	-	hypothetical protein
2038	 34.61	-1	2183133..2183603	-	156	16079097	yorH	BSU20380	-	hypothetical protein
2039	 36.32	-1	2183646..2184617	-	323	16079098	yorG	BSU20390	-	hypothetical protein
2040	 34.21	-1	2184700..2185614	-	304	16079099	yorF	BSU20400	-	hypothetical protein
2041	 32.53	-2	2185636..2186007	-	123	16079100	yorE	BSU20410	-	hypothetical protein
2042	 35.87	-1	2186181..2186495	-	104	16079101	yorD	BSU20420	-	hypothetical protein
2043	 33.60	-2	2186572..2186952	-	126	16079102	yorC	BSU20430	-	hypothetical protein
2044	 34.34	-1	2187015..2187311	-	98	16079103	yorB	BSU20440	-	hypothetical protein
2045	 36.06	-1	2187400..2189160	-	586	16079104	yorA	BSU20450	-	hypothetical protein
2046	 37.82	-1	2189157..2189981	-	274	16079105	yoqZ	BSU20460	-	hypothetical protein
2047	 37.37	-1	2190080..2190475	-	131	16079106	yoqY	BSU20470	-	hypothetical protein
2048	 33.78	-2	2190530..2190751	-	73	16079107	yoqX	BSU20480	-	hypothetical protein
2049	 40.59	0	2190822..2191496	+	224	16079108	yoqW	BSU20490	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.