IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1889	 34.52	-1	2057926..2058849	-	307	16078949	yobF	BSU18890	-	hypothetical protein
1890	 31.36	-2	2059448..2059903	-	151	16078950	yozJ	BSU18900	-	hypothetical protein
1891	 30.20	-2	2061361..2062476	+	371	16078951	rapK	BSU18910	-	response regulator aspartate phosphatase
1892	 39.02	0	2062473..2062595	+	40	16078952	phrK	BSU18920	-	regulator of the activity of phosphatase RapK
1893	 38.73	0	2062721..2063332	-	203	16078953	yobH	BSU18930	-	hypothetical protein
1894	 36.49	-1	2063411..2063758	-	115	16078954	yozK	BSU18940	-	hypothetical protein
1895	 30.61	-2	2063751..2064044	-	97	16078955	yozL	BSU18950	-	hypothetical protein
1896	 31.85	-2	2064253..2064588	+	111	16078956	yozM	BSU18960	-	hypothetical protein
1897	 29.59	-2	2064635..2068240	-	1201	16078957	yobI	BSU18970	-	hypothetical protein
1898	 28.71	-2	2069455..2070297	-	280	16078958	yobJ	BSU18980	-	hypothetical protein
1899	 34.86	-1	2070497..2070955	-	152	16078959	yobK	BSU18990	-	hypothetical protein
1900	 38.16	-1	2070965..2072767	-	600	16078960	yobL	BSU19000	-	hypothetical protein
1901	 35.17	-1	2072869..2073357	-	162	16078961	yobM	BSU19010	-	hypothetical protein
1902	 42.06	0	2073650..2074990	+	446	16078962	yobN	BSU19020	-	hypothetical protein
1903	 41.97	0	2075417..2077837	+	806	16078963	yobO	BSU19030	-	hypothetical protein
1904	 48.95	+1	2078425..2078757	-	110	16078964	csaA	BSU19040	-	molecular chaperone
1905	 44.35	0	2078822..2079547	-	241	16078965	yobQ	BSU19050	-	hypothetical protein
1906	 43.95	0	2079562..2080305	-	247	16078966	yobR	BSU19060	-	hypothetical protein
1907	 42.36	0	2080383..2080958	-	191	16078967	yobS	BSU19070	-	hypothetical protein
1908	 47.44	0	2080964..2081665	-	233	16078968	yobT	BSU19080	-	hypothetical protein
1909	 42.86	0	2081742..2082224	-	160	16078969	yobU	BSU19090	-	hypothetical protein
1910	 43.10	0	2082278..2083219	-	313	16078970	yobV	BSU19100	-	hypothetical protein
1911	 40.29	0	2083425..2083970	+	181	16078971	yobW	BSU19110	-	hypothetical protein
1912	 42.59	0	2083997..2084320	-	107	16078972	yozA	BSU19120	-	hypothetical protein
1913	 39.82	0	2084514..2085191	+	225	16078973	yocA	BSU19130	-	hypothetical protein
1914	 38.73	0	2085281..2085817	-	178	16078974	yozB	BSU19140	-	hypothetical protein
1915	 42.53	0	2085954..2086736	-	260	16078975	yocB	BSU19150	-	hypothetical protein
1916	 37.95	-1	2086907..2087404	+	165	16078976	yocC	BSU19160	-	hypothetical protein
1917	 41.51	0	2087468..2088445	+	325	16078977	yocD	BSU19170	-	hypothetical protein
1918	 41.93	0	2088607..2089665	+	352	16078978	des	BSU19180	-	fatty acid desaturase
1919	 38.19	-1	2089785..2090897	+	370	16078979	yocF	BSU19190	-	hypothetical protein
1920	 43.00	0	2090916..2091515	+	199	16078980	yocG	BSU19200	-	hypothetical protein
1921	 41.67	0	2092110..2092973	-	287	16078981	yocH	BSU19210	-	hypothetical protein
1922	 43.41	0	2093221..2094996	-	591	16078982	yocI	BSU19220	-	hypothetical protein
1923	 40.51	0	2095561..2096187	-	208	16078983	acpD	BSU19230	-	azoreductase
1924	 44.60	0	2096338..2096967	-	209	16078984	yocK	BSU19240	-	hypothetical protein
1925	 42.64	0	2096904..2097236	-	110	16078985	yocL	BSU19250	-	hypothetical protein
1926	 40.46	0	2097528..2098004	-	158	16078986	yocM	BSU19260	-	hypothetical protein
1927	 38.64	-1	2098071..2098334	+	87	16078987	yozN	BSU19270	-	hypothetical protein
1928	 40.60	0	2098339..2098572	+	77	16078988	yocN	BSU19280	-	hypothetical protein
1929	 39.13	0	2098658..2099002	-	114	16078989	yozO	BSU19290	-	hypothetical protein
1930	 33.33	-2	2099359..2099562	-	67	16078990	yozC	BSU19300	-	hypothetical protein
1931	 47.45	0	2099792..2101279	+	495	16078991	dhaS	BSU19310	-	aldehyde dehydrogenase
1932	 45.02	0	2101380..2103278	+	632	50812246	sqhC	BSU19320	-	squalene-hopene cyclase
1933	 43.97	0	2103268..2104113	+	281	16078993	sodF	BSU19330	-	superoxide dismutase
1934	 40.13	0	2104146..2105483	-	445	16078994	yocR	BSU19340	-	hypothetical protein
1935	 43.58	0	2105702..2106667	+	321	16078995	yocS	BSU19350	-	hypothetical protein
1936	 45.06	0	2106717..2107970	-	417	16078996	odhB	BSU19360	-	dihydrolipoamide acetyltransferase
1937	 46.25	0	2107986..2110811	-	941	50812247	kgd	BSU19370	-	alpha-ketoglutarate decarboxylase
1938	 44.16	0	2111039..2113024	-	661	16078998	yojO	BSU19380	-	hypothetical protein
1939	 42.73	0	2112966..2113880	-	304	16078999	yojN	BSU19390	-	hypothetical protein
1940	 47.04	0	2113944..2114534	-	196	16079000	yojM	BSU19400	-	hypothetical protein
1941	 42.41	0	2114627..2115871	-	414	16079001	yojL	BSU19410	-	hypothetical protein
1942	 40.80	0	2116253..2117470	-	405	50812248	yojK	BSU19420	-	hypothetical protein
1943	 44.55	0	2117706..2118329	-	207	50812249	yojJ	BSU19430	-	hypothetical protein
1944	 44.89	0	2118594..2119952	+	452	16079004	yojI	BSU19440	-	multidrug efflux protein
1945	 39.81	0	2119968..2120816	+	282	16079005	yojH	BSU19450	-	hypothetical protein
1946	 41.96	0	2120842..2121270	-	142	50812250	yojG	BSU19460	-	hypothetical protein
1947	 42.74	0	2121524..2121874	-	116	16079006	yojF	BSU19470	-	hypothetical protein
1948	 45.93	0	2122225..2123121	-	298	50812251	yojE	BSU19480	-	hypothetical protein
1949	 40.93	0	2123220..2123693	+	157	50812252	yozR	BSU19490	-	hypothetical protein
1950	 47.86	0	2123586..2123819	-	77	16079008	yojC	BSU19500	-	hypothetical protein
1951	 53.59	+2	2123728..2123964	-	78	16079009	yojB	BSU19510	-	hypothetical protein
1952	 45.84	0	2124049..2125383	-	444	16079010	yojA	BSU19520	-	hypothetical protein
1953	 42.56	0	2125748..2126137	+	129	16079011	yodA	BSU19530	-	hypothetical protein
1954	 46.02	0	2126544..2126882	-	112	16079012	yodB	BSU19540	-	hypothetical protein
1955	 42.53	0	2127012..2127620	+	202	16079013	yodC	BSU19550	-	hypothetical protein
1956	 47.60	0	2127663..2128265	-	200	16079014	yodD	BSU19560	-	hypothetical protein
1957	 45.29	0	2128281..2129192	-	303	16079015	yodE	BSU19570	-	hypothetical protein
1958	 45.14	0	2129576..2131066	+	496	16079016	yodF	BSU19580	-	hypothetical protein
1959	 41.68	0	2131101..2132501	-	466	16079017	ctpA	BSU19590	-	carboxy-terminal processing protease
1960	 44.16	0	2132654..2133355	+	233	16079018	yodH	BSU19600	-	hypothetical protein
1961	 48.02	+1	2133443..2133694	+	83	16079019	yodI	BSU19610	-	hypothetical protein
1962	 41.97	0	2133765..2134586	-	273	16079020	yodJ	BSU19620	-	hypothetical protein
1963	 41.31	0	2134669..2135370	-	233	16079021	deoD	BSU19630	-	purine nucleoside phosphorylase
1964	 43.08	0	2135737..2136054	-	105	16079022	yodL	BSU19640	-	hypothetical protein
1965	 41.83	0	2136112..2136723	-	203	16079023	yodM	BSU19650	-	hypothetical protein
1966	 36.72	-1	2136801..2136977	-	58	16079024	yozD	BSU19660	-	hypothetical protein
1967	 37.44	-1	2137236..2137916	-	226	16079025	yodN	BSU19670	-	hypothetical protein
1968	 40.89	0	2138067..2138291	-	74	16079026	yozE	BSU19680	-	hypothetical protein
1969	 45.06	0	2138652..2140067	-	471	16079027	kamA	BSU19690	-	lysine 2,3-aminomutase
1970	 45.65	0	2140096..2140923	-	275	16079028	yodP	BSU19700	-	hypothetical protein
1971	 47.29	0	2140901..2142211	-	436	16079029	yodQ	BSU19710	-	acetylornithine deacetylase
1972	 45.57	0	2142220..2142873	-	217	16079030	yodR	BSU19720	-	hypothetical protein
1973	 50.00	+1	2142858..2143547	-	229	16079031	yodS	BSU19730	-	hypothetical protein
1974	 46.07	0	2143554..2144888	-	444	16079032	yodT	BSU19740	-	hypothetical protein
1975	 41.03	0	2145211..2145990	-	259	16079033	cgeE	BSU19750	-	involved in maturation of the outermost layer of the spore
1976	 40.36	0	2146019..2147299	-	426	16079034	cgeD	BSU19760	-	involved in maturation of the outermost layer of the spore
1977	 38.89	0	2147364..2147669	-	101	16079035	cgeC	BSU19770	-	involved in maturation of the outermost layer of the spore
1978	 41.04	0	2147874..2148275	+	133	16079036	cgeA	BSU19780	-	involved in maturation of the outermost layer of the spore
1979	 42.87	0	2148282..2149235	+	317	16079037	cgeB	BSU19790	-	involved in maturation of the outermost layer of the spore
1980	 44.04	0	2149306..2150454	-	382	16079038	phy	BSU19800	-	phytase
1981	 44.13	0	2150824..2151249	+	141	16079039	yodU	BSU19810	-	hypothetical protein
1982	 32.20	-2	2151284..2151460	-	58	16079040	yotN	BSU19820	-	hypothetical protein
1983	 35.20	-1	2151463..2152050	-	195	16079041	yotM	BSU19830	-	hypothetical protein
1984	 32.92	-2	2152125..2152367	+	80	16079042	yotL	BSU19840	-	hypothetical protein
1985	 34.41	-1	2152369..2152554	-	61	16079043	yotK	BSU19850	-	hypothetical protein
1986	 30.52	-2	2152638..2152850	-	70	16079044	yotJ	BSU19860	-	hypothetical protein
1987	 29.75	-2	2152916..2153278	-	120	16079045	yotI	BSU19870	-	hypothetical protein
1988	 32.18	-2	2153275..2153448	-	57	16079046	yotH	BSU19880	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.