IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1797	 37.91	-1	1924864..1925256	-	130	16078860	cotM	BSU17970	-	spore coat protein (outer)
1798	 40.14	0	1925337..1925483	-	48	16078861	sspP	BSU17980	-	acid-soluble spore protein P
1799	 39.46	0	1925515..1925661	-	48	16078862	sspO	BSU17990	-	acid-soluble spore protein O
1800	 44.58	0	1925889..1928618	+	909	16078863	citB	BSU18000	-	aconitate hydratase
1801	 40.74	0	1928690..1929202	+	170	16078864	yneN	BSU18010	-	hypothetical protein
1802	 42.18	0	1929473..1929619	+	48	50812240	sspN	BSU18020	-	acid-soluble spore protein N
1803	 38.10	-1	1929656..1929907	+	83	16078865	tlp	BSU18030	-	small acid-soluble spore protein Tlp
1804	 40.71	0	1930043..1930408	+	121	50812241	yneP	BSU18040	-	hypothetical protein
1805	 42.33	0	1930424..1930723	+	99	16078866	yneQ	BSU18050	-	hypothetical protein
1806	 43.40	0	1930754..1931041	-	95	16078867	yneR	BSU18060	-	hypothetical protein
1807	 40.72	0	1931129..1931710	-	193	16078868	yneS	BSU18070	-	putative glycerol-3-phosphate acyltransferase PlsY
1808	 44.12	0	1931880..1932287	+	135	16078869	yneT	BSU18080	-	hypothetical protein
1809	 45.83	0	1932686..1934653	+	655	50812242	parE	BSU18090	-	DNA topoisomerase IV subunit B
1810	 43.04	0	1934657..1937077	+	806	16078871	parC	BSU18100	-	DNA topoisomerase IV subunit A
1811	 41.61	0	1937275..1937685	-	136	16078872	ynfC	BSU18110	-	hypothetical protein
1812	 42.70	0	1938134..1939531	+	465	16078873	alsT	BSU18120	-	amino acid carrier protein
1813	 43.33	0	1939834..1941333	+	499	50812243	bglC	BSU18130	-	endo-1,4-beta-glucanase
1814	 35.98	-1	1941401..1941664	+	87	16078875	ynfE	BSU18140	-	hypothetical protein
1815	 44.21	0	1941923..1943191	-	422	16078876	ynfF	BSU18150	-	hypothetical protein
1816	 46.43	0	1943322..1944863	-	513	16078877	xynD	BSU18160	-	endo-1,4-beta-xylanase (xylanase D)
1817	 45.41	0	1945458..1945904	+	148	16078878	yngA	BSU18170	-	hypothetical protein
1818	 46.09	0	1945911..1946804	+	297	16078879	yngB	BSU18180	-	hypothetical protein
1819	 42.88	0	1946877..1947473	+	198	16078880	yngC	BSU18190	-	hypothetical protein
1820	 44.17	0	1947522..1948721	-	399	16078881	yngD	BSU18200	-	hypothetical protein
1821	 47.87	0	1948891..1950678	-	595	16078882	yngE	BSU18210	-	hypothetical protein
1822	 47.89	0	1950437..1951219	-	260	16078883	yngF	BSU18220	-	enoyl-CoA hydratase
1823	 47.11	0	1951240..1952139	-	299	16078884	yngG	BSU18230	-	hydroxymethylglutaryl-CoA lyase
1824	 47.27	0	1952390..1953724	-	444	16078885	yngH	BSU18240	-	acetyl-CoA carboxylase biotin carboxylase subunit
1825	 46.12	0	1953734..1955383	-	549	16078886	yngI	BSU18250	-	acyl-CoA synthetase
1826	 47.68	0	1955427..1956569	-	380	16078887	yngJ	BSU18260	-	hypothetical protein
1827	 44.44	0	1956660..1956965	-	101	16078888	ynzE	BSU18270	-	hypothetical protein
1828	 43.38	0	1957236..1958768	-	510	16078889	yngK	BSU18280	-	hypothetical protein
1829	 39.95	0	1958904..1959296	-	130	16078890	yngL	BSU18290	-	hypothetical protein
1830	 44.87	0	1959407..1963246	-	1279	16078891	ppsE	BSU18300	-	plipastatin synthetase
1831	 46.86	0	1963254..1974065	-	3603	16078892	ppsD	BSU18310	-	plipastatin synthetase
1832	 48.24	+1	1974090..1981757	-	2555	16078893	ppsC	BSU18320	-	plipastatin synthetase
1833	 45.16	0	1981774..1989456	-	2560	16078894	ppsB	BSU18330	-	plipastatin synthetase
1834	 46.57	0	1989481..1997166	-	2561	16078895	ppsA	BSU18340	-	plipastatin synthetase
1835	 44.65	0	1997549..1999024	-	491	16078896	dacC	BSU18350	-	penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
1836	 44.27	0	1999058..2000035	-	325	16078897	yoxA	BSU18360	-	hypothetical protein
1837	 44.11	0	2000169..2001560	-	463	16078898	yoeA	BSU18370	-	hypothetical protein
1838	 35.53	-1	2001846..2002391	+	181	16078899	yoeB	BSU18380	-	hypothetical protein
1839	 36.11	-1	2002869..2003156	-	95	16078900	yoeC	BSU18390	-	hypothetical protein
1840	 37.23	-1	2003472..2003702	-	76	16078901	yoeD	BSU18400	-	hypothetical protein
1841	 43.88	0	2003887..2005650	+	587	16078902	ggt	BSU18410	-	gamma-glutamyltranspeptidase
1842	 44.41	0	2005751..2006608	-	285	16078903	yofA	BSU18420	-	hypothetical protein
1843	 44.04	0	2006736..2007725	+	329	16078904	yogA	BSU18430	-	hypothetical protein
1844	 46.49	0	2007782..2009263	-	493	16078905	gltD	BSU18440	-	glutamate synthase subunit beta
1845	 45.52	0	2009280..2013842	-	1520	16078906	gltA	BSU18450	-	glutamate synthase (large subunit)
1846	 42.75	0	2013989..2014891	+	300	16078907	gltC	BSU18460	-	LysR family transcriptional regulator
1847	 44.00	0	2014943..2016058	-	371	16078908	proJ	BSU18470	-	gamma-glutamyl kinase
1848	 44.74	0	2016055..2016948	-	297	50812244	proH	BSU18480	-	pyrroline-5-carboxylate reductase
1849	 36.31	-1	2017095..2017463	-	122	16078910	rtp	BSU18490	-	replication terminator protein
1850	 44.77	0	2017763..2018479	-	238	16078911	fabG	BSU18500	-	3-ketoacyl-(acyl-carrier-protein) reductase
1851	 39.22	0	2018630..2018935	+	101	16078912	yoxC	BSU18510	-	hypothetical protein
1852	 44.36	0	2019006..2019776	+	256	16078913	yoxB	BSU18520	-	hypothetical protein
1853	 42.77	0	2019820..2020317	+	165	16078914	yoaA	BSU18530	-	hypothetical protein
1854	 45.62	0	2020433..2021677	-	414	16078915	yoaB	BSU18540	-	hypothetical protein
1855	 45.08	0	2021771..2023234	-	487	16078916	yoaC	BSU18550	-	hypothetical protein
1856	 42.42	0	2023252..2024286	-	344	16078917	yoaD	BSU18560	-	hypothetical protein
1857	 46.17	0	2024610..2026643	+	677	16078918	yoaE	BSU18570	-	hypothetical protein
1858	 34.35	-1	2026720..2027013	+	97	16078919	yoaF	BSU18580	-	hypothetical protein
1859	 36.30	-1	2027386..2027790	-	134	16078920	yoaG	BSU18590	-	hypothetical protein
1860	 36.73	-1	2028231..2028524	+	97	50812245	yozQ	BSU18600	-	hypothetical protein
1861	 40.31	0	2028640..2030244	-	534	16078921	yoaH	BSU18610	-	hypothetical protein
1862	 38.12	-1	2030972..2032099	+	375	16078922	yoaI	BSU18620	-	hypothetical protein
1863	 44.78	0	2032136..2032834	-	232	16078923	yoaJ	BSU18630	-	hypothetical protein
1864	 40.71	0	2033104..2033781	-	225	16078924	yoaK	BSU18640	-	hypothetical protein
1865	 38.82	0	2033954..2034991	+	345	16078925	pelB	BSU18650	-	pectate lyase
1866	 40.50	0	2035248..2035931	+	227	16078926	yoaM	BSU18660	-	hypothetical protein
1867	 45.80	0	2036810..2037988	-	392	16078927	yoaN	BSU18670	-	hypothetical protein
1868	 38.45	-1	2038111..2038599	-	162	16078928	yoaO	BSU18680	-	hypothetical protein
1869	 38.76	0	2038819..2039574	-	251	16078929	yoaP	BSU18690	-	hypothetical protein
1870	 32.77	-2	2039882..2040238	+	118	16078930	yoaQ	BSU18700	-	hypothetical protein
1871	 36.11	-1	2040786..2041037	-	83	16078931	yozF	BSU18710	-	hypothetical protein
1872	 43.42	0	2041138..2042049	-	303	16078932	yoaR	BSU18720	-	hypothetical protein
1873	 35.20	-1	2042396..2042878	+	160	16078933	yoaS	BSU18730	-	hypothetical protein
1874	 37.25	-1	2042888..2043142	+	84	16078934	yozG	BSU18740	-	hypothetical protein
1875	 42.39	0	2043248..2044042	+	264	16078935	yoaT	BSU18750	-	hypothetical protein
1876	 41.24	0	2044166..2045038	-	290	16078936	yoaU	BSU18760	-	hypothetical protein
1877	 42.32	0	2045139..2046017	+	292	16078937	yoaV	BSU18770	-	hypothetical protein
1878	 36.57	-1	2046190..2046621	-	143	16078938	yoaW	BSU18780	-	hypothetical protein
1879	 38.07	-1	2046885..2047517	-	210	16078939	yoaZ	BSU18790	-	hypothetical protein
1880	 42.67	0	2047743..2048663	+	306	16078940	penP	BSU18800	-	beta-lactamase precursor
1881	 34.44	-1	2049160..2049522	-	120	16078941	yobA	BSU18810	-	hypothetical protein
1882	 37.88	-1	2049899..2050162	+	87	16078942	yobB	BSU18820	-	hypothetical protein
1883	 41.68	0	2050539..2053139	-	866	16078943	pps	BSU18830	-	phosphoenolpyruvate synthase
1884	 42.52	0	2053809..2054450	-	213	16078944	xynA	BSU18840	-	endo-1,4-beta-xylanase
1885	 33.92	-2	2055488..2055826	+	112	16078945	yobD	BSU18850	-	hypothetical protein
1886	 31.46	-2	2055860..2056180	-	106	16078946	yozH	BSU18860	-	hypothetical protein
1887	 32.51	-2	2056425..2056790	+	121	16078947	yozI	BSU18870	-	hypothetical protein
1888	 39.55	0	2057012..2057671	+	219	16078948	yobE	BSU18880	-	hypothetical protein
1889	 34.52	-1	2057926..2058849	-	307	16078949	yobF	BSU18890	-	hypothetical protein
1890	 31.36	-2	2059448..2059903	-	151	16078950	yozJ	BSU18900	-	hypothetical protein
1891	 30.20	-2	2061361..2062476	+	371	16078951	rapK	BSU18910	-	response regulator aspartate phosphatase
1892	 39.02	0	2062473..2062595	+	40	16078952	phrK	BSU18920	-	regulator of the activity of phosphatase RapK
1893	 38.73	0	2062721..2063332	-	203	16078953	yobH	BSU18930	-	hypothetical protein
1894	 36.49	-1	2063411..2063758	-	115	16078954	yozK	BSU18940	-	hypothetical protein
1895	 30.61	-2	2063751..2064044	-	97	16078955	yozL	BSU18950	-	hypothetical protein
1896	 31.85	-2	2064253..2064588	+	111	16078956	yozM	BSU18960	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.