IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1451	 42.19	0	1519838..1520503	+	221	16078515	ykqB	BSU14510	-	hypothetical protein
1452	 43.43	0	1520658..1522391	+	577	16078516	adeC	BSU14520	-	adenine deaminase
1453	 44.00	0	1522425..1524092	-	555	16078517	ykqC	BSU14530	-	hypothetical protein
1454	 33.81	-2	1524098..1524307	-	69	16078518	ykzG	BSU14540	-	hypothetical protein
1455	 42.76	0	1524693..1525466	+	257	16078519	ykrA	BSU14550	-	hypothetical protein
1456	 43.60	0	1525502..1526056	-	184	16078520	def	BSU14560	-	peptide deformylase
1457	 36.57	-1	1526592..1527209	+	205	16078521	ykyA	BSU14570	-	hypothetical protein
1458	 43.37	0	1527633..1528748	+	371	16078522	pdhA	BSU14580	-	pyruvate dehydrogenase (E1 alpha subunit)
1459	 44.99	0	1528752..1529729	+	325	16078523	pdhB	BSU14590	-	pyruvate dehydrogenase (E1 beta subunit)
1460	 44.32	0	1529844..1531172	+	442	16078524	pdhC	BSU14600	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1461	 44.52	0	1531177..1532589	+	470	16078525	pdhD	BSU14610	-	dihydrolipoamide dehydrogenase
1462	 39.73	0	1532634..1533008	-	124	16078526	slp	BSU14620	-	small peptidoglycan-associated lipoprotein
1463	 43.45	0	1533586..1535058	-	490	16078527	speA	BSU14630	-	arginine decarboxylase
1464	 44.19	0	1535243..1535509	+	88	16078528	yktA	BSU14640	-	hypothetical protein
1465	 43.82	0	1535542..1536180	-	212	16078529	yktB	BSU14650	-	hypothetical protein
1466	 37.57	-1	1536420..1536608	+	62	16078530	ykzI	BSU14660	-	hypothetical protein
1467	 42.98	0	1536748..1537545	+	265	16078531	yktC	BSU14670	-	hypothetical protein
1468	 45.69	0	1537571..1537999	+	142	16078532	ykzC	BSU14680	-	hypothetical protein
1469	 38.47	-1	1538077..1538991	-	304	16078533	yktD	BSU14690	-	hypothetical protein
1470	 44.83	0	1539343..1540908	-	521	16078534	nprE	BSU14700	-	extracellular neutral metalloprotease
1471	 40.65	0	1541193..1543133	+	646	16078535	ylaA	BSU14710	-	hypothetical protein
1472	 34.44	-1	1543123..1543392	+	89	16078536	ylaB	BSU14720	-	hypothetical protein
1473	 41.00	0	1543392..1543913	+	173	16078537	ylaC	BSU14730	-	hypothetical protein
1474	 44.56	0	1543910..1544203	+	97	16078538	ylaD	BSU14740	-	hypothetical protein
1475	 40.85	0	1544243..1544854	-	203	16078539	ylaE	BSU14750	-	hypothetical protein
1476	 40.74	0	1545127..1545315	-	62	16078540	ylaF	BSU14760	-	hypothetical protein
1477	 45.24	0	1545428..1547266	+	612	16078541	ylaG	BSU14770	-	hypothetical protein
1478	 45.28	0	1547323..1547640	+	105	16078542	ylaH	BSU14780	-	hypothetical protein
1479	 40.48	0	1547696..1547905	-	69	16078543	ylaI	BSU14790	-	hypothetical protein
1480	 43.81	0	1547988..1548617	-	209	16078544	ylaJ	BSU14800	-	hypothetical protein
1481	 44.32	0	1548772..1550100	+	442	16078545	ylaK	BSU14810	-	hypothetical protein
1482	 45.88	0	1550104..1550589	-	161	16078546	ylaL	BSU14820	-	hypothetical protein
1483	 43.33	0	1550692..1551621	+	309	16078547	ylaM	BSU14830	-	glutaminase
1484	 41.13	0	1551719..1552000	+	93	16078548	ylaN	BSU14840	-	hypothetical protein
1485	 42.82	0	1552206..1553417	+	403	16078549	ftsW	BSU14850	-	cell-division protein
1486	 45.20	0	1553492..1556938	+	1148	16078550	pycA	BSU14860	-	pyruvate carboxylase
1487	 42.67	0	1557341..1558261	-	306	16078551	ctaA	BSU14870	-	heme-containing membrane protein
1488	 43.46	0	1558616..1559533	+	305	16078552	ctaB	BSU14880	-	protoheme IX farnesyltransferase
1489	 43.23	0	1559773..1560843	+	356	16078553	ctaC	BSU14890	-	cytochrome caa3 oxidase (subunit II)
1490	 47.51	0	1560876..1562744	+	622	16078554	ctaD	BSU14900	-	cytochrome caa3 oxidase (subunit I)
1491	 45.51	0	1562744..1563367	+	207	16078555	ctaE	BSU14910	-	cytochrome caa3 oxidase (subunit III)
1492	 41.44	0	1563370..1563702	+	110	16078556	ctaF	BSU14920	-	cytochrome caa3 oxidase (subunit IV)
1493	 45.86	0	1563729..1564622	+	297	16078557	ctaG	BSU14930	-	hypothetical protein
1494	 46.28	0	1564654..1565016	-	120	16078558	ylbA	BSU14940	-	hypothetical protein
1495	 42.38	0	1565156..1565608	+	150	16078559	ylbB	BSU14950	-	hypothetical protein
1496	 42.27	0	1565685..1566725	+	346	16078560	ylbC	BSU14960	-	hypothetical protein
1497	 42.86	0	1566957..1567355	+	132	16078561	ylbD	BSU14970	-	hypothetical protein
1498	 40.83	0	1567371..1567610	+	79	16078562	ylbE	BSU14980	-	hypothetical protein
1499	 48.22	+1	1567726..1568175	+	149	16078563	ylbF	BSU14990	-	hypothetical protein
1500	 37.73	-1	1568230..1568502	+	90	16078564	ylbG	BSU15000	-	hypothetical protein
1501	 45.25	0	1568825..1569319	+	164	16078565	ylbH	BSU15010	-	hypothetical protein
1502	 41.98	0	1569383..1569868	+	161	16078566	coaD	BSU15020	-	phosphopantetheine adenylyltransferase
1503	 45.07	0	1569879..1571105	-	408	16078567	ylbJ	BSU15030	-	hypothetical protein
1504	 46.87	0	1571286..1572068	+	260	16078568	ylbK	BSU15040	-	hypothetical protein
1505	 41.41	0	1572070..1573122	+	350	16078569	ylbL	BSU15050	-	hypothetical protein
1506	 44.63	0	1573111..1574358	-	415	16078570	ylbM	BSU15060	-	hypothetical protein
1507	 38.34	-1	1574568..1575086	+	172	16078571	ylbN	BSU15070	-	hypothetical protein
1508	 38.89	0	1575108..1575287	+	59	16078572	rpmF	BSU15080	-	50S ribosomal protein L32
1509	 45.19	0	1575433..1576014	+	193	16078573	ylbO	BSU15090	-	hypothetical protein
1510	 42.44	0	1576071..1576553	-	160	16078574	ylbP	BSU15100	-	hypothetical protein
1511	 45.93	0	1576713..1577609	+	298	16078575	ylbQ	BSU15110	-	2-dehydropantoate 2-reductase
1512	 42.78	0	1577680..1579299	+	539	16078576	yllA	BSU15120	-	hypothetical protein
1513	 41.44	0	1579425..1579856	+	143	16078577	yllB	BSU15130	-	cell division protein MraZ
1514	 45.73	0	1579926..1580861	+	311	16078578	mraW	BSU15140	-	S-adenosyl-methyltransferase MraW
1515	 42.09	0	1580901..1581254	+	117	16078579	ftsL	BSU15150	-	cell-division protein
1516	 42.12	0	1581251..1583401	+	716	16078580	pbpB	BSU15160	-	penicillin-binding protein 2B
1517	 45.82	0	1583518..1585455	+	645	16078581	spoVD	BSU15170	-	penicillin-binding protein
1518	 46.13	0	1585631..1587115	+	494	16078582	murE	BSU15180	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1519	 42.77	0	1587228..1588202	+	324	16078583	mraY	BSU15190	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1520	 45.06	0	1588203..1589558	+	451	16078584	murD	BSU15200	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1521	 46.87	0	1589619..1590719	+	366	16078585	spoVE	BSU15210	-	required for spore cortex peptidoglycan synthesis (stage V sporulation)
1522	 43.77	0	1590842..1591933	+	363	16078586	murG	BSU15220	-	N-acetylglucosaminyl transferase
1523	 46.27	0	1591960..1592871	+	303	16078587	murB	BSU15230	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1524	 37.37	-1	1593002..1593793	+	263	16078588	divIB	BSU15240	-	cell-division initiation protein
1525	 42.53	0	1593790..1594485	+	231	16078589	ylxW	BSU15250	-	hypothetical protein
1526	 40.68	0	1594508..1595215	+	235	16078590	ylxX	BSU15260	-	hypothetical protein
1527	 37.16	-1	1595233..1595598	+	121	16078591	sbp	BSU15270	-	small basic protein
1528	 43.84	0	1595772..1597094	+	440	16078592	ftsA	BSU15280	-	cell-division protein
1529	 47.43	0	1597130..1598278	+	382	16078593	ftsZ	BSU15290	-	cell division protein FtsZ
1530	 44.70	0	1598580..1602881	+	1433	16078594	bpr	BSU15300	-	bacillopeptidase F
1531	 39.46	0	1603076..1604005	+	309	16078595	spoIIGA	BSU15310	-	protease
1532	 40.42	0	1604068..1604787	+	239	16078596	sigE	BSU15320	-	sporulation sigma factor SigE
1533	 42.78	0	1604927..1605709	+	260	16078597	sigG	BSU15330	-	sporulation sigma factor SigG
1534	 42.77	0	1605857..1606651	+	264	16078598	ylmA	BSU15340	-	hypothetical protein
1535	 45.51	0	1606853..1608133	+	426	16078599	ylmB	BSU15350	-	acetylornithine deacetylase
1536	 38.62	-1	1608216..1608461	+	81	16078600	ylmC	BSU15360	-	hypothetical protein
1537	 45.64	0	1608624..1609460	+	278	16078601	ylmD	BSU15370	-	hypothetical protein
1538	 45.31	0	1609473..1610165	+	230	16078602	ylmE	BSU15380	-	hypothetical protein
1539	 45.11	0	1610168..1610617	+	149	16078603	ylmF	BSU15390	-	hypothetical protein
1540	 40.29	0	1610624..1610896	+	90	16078604	ylmG	BSU15400	-	hypothetical protein
1541	 47.55	0	1610957..1611730	+	257	16078605	ylmH	BSU15410	-	hypothetical protein
1542	 37.78	-1	1611824..1612318	+	164	16078606	divIVA	BSU15420	-	cell-division initiation protein
1543	 44.87	0	1612660..1615425	+	921	16078607	ileS	BSU15430	-	isoleucyl-tRNA synthetase
1544	 39.86	0	1615503..1615946	+	147	16078608	ylyA	BSU15440	-	hypothetical protein
1545	 41.29	0	1616049..1616513	+	154	16078609	lspA	BSU15450	-	lipoprotein signal peptidase
1546	 46.82	0	1616515..1617426	+	303	50812225	ylyB	BSU15460	-	hypothetical protein
1547	 43.59	0	1617609..1618154	+	181	16078611	pyrR	BSU15470	-	pyrimidine regulatory protein PyrR
1548	 49.58	+1	1618326..1619630	+	434	16078612	pyrP	BSU15480	-	uracil permease
1549	 45.68	0	1619776..1620690	+	304	16078613	pyrB	BSU15490	-	aspartate carbamoyltransferase catalytic subunit
1550	 46.23	0	1620674..1621960	+	428	16078614	pyrC	BSU15500	-	dihydroorotase
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.