IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1319	 47.08	0	1385330..1386289	-	319	16078384	ispA	BSU13190	-	intracellular serine protease
1320	 41.25	0	1386512..1387345	+	277	16078385	ykoB	BSU13200	-	hypothetical protein
1321	 46.27	0	1387376..1388140	-	254	16078386	ykoC	BSU13210	-	hypothetical protein
1322	 46.57	0	1388287..1389759	-	490	16078387	ykoD	BSU13220	-	hypothetical protein
1323	 48.00	+1	1389746..1390345	-	199	16078388	ykoE	BSU13230	-	hypothetical protein
1324	 47.43	0	1390347..1390949	-	200	16078389	ykoF	BSU13240	-	hypothetical protein
1325	 46.87	0	1391260..1391946	+	228	16078390	ykoG	BSU13250	-	hypothetical protein
1326	 46.23	0	1391950..1393314	+	454	16078391	ykoH	BSU13260	-	hypothetical protein
1327	 41.41	0	1393311..1393991	+	226	16078392	ykoI	BSU13270	-	hypothetical protein
1328	 41.52	0	1394083..1394595	+	170	16078393	ykoJ	BSU13280	-	hypothetical protein
1329	 39.13	0	1394678..1394815	+	45	16078394	ykzD	BSU13290	-	hypothetical protein
1330	 42.85	0	1395321..1396676	+	451	16078395	ykoK	BSU13300	-	hypothetical protein
1331	 42.64	0	1396719..1397051	-	110	16078396	tnrA	BSU13310	-	transcriptional regulator
1332	 39.74	0	1397246..1397401	+	51	16078397	ykzB	BSU13320	-	hypothetical protein
1333	 30.60	-2	1397489..1397671	+	60	16078398	ykoL	BSU13330	-	hypothetical protein
1334	 42.58	0	1397804..1398268	+	154	16078399	ykoM	BSU13340	-	hypothetical protein
1335	 42.69	0	1398283..1399404	-	373	16078400	ykoN	BSU13350	-	hypothetical protein
1336	 38.59	-1	1399496..1400047	+	183	16078401	ykoP	BSU13360	-	hypothetical protein
1337	 40.84	0	1400075..1400887	-	270	16078402	ykoQ	BSU13370	-	hypothetical protein
1338	 42.01	0	1401080..1402774	+	564	16078403	ykoS	BSU13380	-	hypothetical protein
1339	 42.90	0	1402787..1403800	+	337	16078404	ykoT	BSU13390	-	hypothetical protein
1340	 45.10	0	1403826..1405661	-	611	16078405	ligD	BSU13400	-	ATP-dependent DNA ligase
1341	 45.19	0	1405665..1406600	-	311	16078406	ykoV	BSU13410	-	hypothetical protein
1342	 40.58	0	1406637..1408886	-	749	50812223	ykoW	BSU13420	-	hypothetical protein
1343	 43.09	0	1409220..1409885	+	221	16078407	ykoX	BSU13430	-	hypothetical protein
1344	 45.64	0	1409962..1410936	+	324	16078408	ykoY	BSU13440	-	hypothetical protein
1345	 37.30	-1	1411200..1411955	+	251	16078409	sigI	BSU13450	-	putative RNA polymerase sigma factor SigI
1346	 39.88	0	1411952..1413097	+	381	16078410	ykrI	BSU13460	-	hypothetical protein
1347	 47.18	0	1413108..1413302	-	64	16078411	sspD	BSU13470	-	small acid-soluble spore protein (alpha/beta-type SASP)
1348	 41.03	0	1413433..1414134	-	233	16078412	ykrK	BSU13480	-	hypothetical protein
1349	 45.93	0	1414305..1415201	+	298	16078413	ykrL	BSU13490	-	heat shock protein HtpX
1350	 44.07	0	1415375..1416724	+	449	16078414	ykrM	BSU13500	-	hypothetical protein
1351	 37.29	-1	1417027..1417203	+	58	16078415	ykzE	BSU13510	-	hypothetical protein
1352	 41.45	0	1417246..1418268	-	340	16078416	ykrP	BSU13520	-	hypothetical protein
1353	 40.87	0	1418521..1420737	+	738	16078417	kinE	BSU13530	-	two-component sensor histidine kinase
1354	 48.59	+1	1420734..1421231	+	165	16078418	ogt	BSU13540	-	O6-methylguanine DNA alkyltransferase
1355	 46.89	0	1421480..1422541	-	353	16078419	mtnA	BSU13550	-	methylthioribose-1-phosphate isomerase
1356	 44.50	0	1422549..1423748	-	399	16078420	mtnK	BSU13560	-	methylthioribose kinase
1357	 44.10	0	1424075..1424854	-	259	16078421	ykrU	BSU13570	-	hypothetical protein
1358	 47.03	0	1424949..1426145	+	398	16078422	ykrV	BSU13580	-	transaminase
1359	 48.03	+1	1426342..1427586	+	414	16078423	mtnW	BSU13590	-	2,3-diketo-5-methylthiopentyl-1-phosphate enolase
1360	 42.09	0	1427583..1428290	+	235	16078424	mtnX	BSU13600	-	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
1361	 44.29	0	1428248..1428877	+	209	16078425	mtnB	BSU13610	-	methylthioribulose-1-phosphate dehydratase
1362	 41.53	0	1428892..1429428	+	178	16078426	ykrZ	BSU13620	-	hypothetical protein
1363	 41.12	0	1429469..1429789	-	106	16078427	ykvA	BSU13630	-	hypothetical protein
1364	 40.70	0	1429992..1430249	+	85	16078428	spo0E	BSU13640	-	negative sporulation regulatory phosphatase
1365	 37.96	-1	1430335..1430766	+	143	16078429	eag	BSU13650	-	small membrane protein
1366	 41.55	0	1430794..1432314	-	506	16078430	kinD	BSU13660	-	two-component sensor histidine kinase
1367	 40.87	0	1432507..1432944	+	145	16078431	ykvE	BSU13670	-	hypothetical protein
1368	 43.00	0	1432984..1433769	-	261	16078432	motB	BSU13680	-	flagellar motor protein MotB
1369	 44.53	0	1433741..1434553	-	270	16078433	motA	BSU13690	-	flagellar motor protein MotA
1370	 44.90	0	1434936..1437035	-	699	16078434	clpE	BSU13700	-	ATP-dependent Clp protease-like (class III stress gene)
1371	 43.97	0	1437400..1438443	+	347	16078435	ykvI	BSU13710	-	hypothetical protein
1372	 45.00	0	1438756..1439415	+	219	16078436	ykvJ	BSU13720	-	hypothetical protein
1373	 45.56	0	1439408..1439857	+	149	16078437	ykvK	BSU13730	-	hypothetical protein
1374	 46.31	0	1439850..1440581	+	243	16078438	ykvL	BSU13740	-	hypothetical protein
1375	 40.16	0	1440599..1441096	+	165	16078439	ykvM	BSU13750	-	7-cyano-7-deazaguanine reductase
1376	 38.66	-1	1441655..1442011	-	118	16078440	ykvN	BSU13760	-	hypothetical protein
1377	 40.83	0	1442180..1442926	+	248	16078441	ykvO	BSU13770	-	hypothetical protein
1378	 38.25	-1	1443407..1444606	+	399	16078442	ykvP	BSU13780	-	hypothetical protein
1379	 37.91	-1	1444946..1445644	+	232	16078443	ykvQ	BSU13790	-	hypothetical protein
1380	 42.96	0	1446559..1446849	+	96	16078444	ykvR	BSU13800	-	hypothetical protein
1381	 35.19	-1	1446970..1447401	-	143	16078445	ykvS	BSU13810	-	hypothetical protein
1382	 39.87	0	1447814..1448440	+	208	16078446	ykvT	BSU13820	-	hypothetical protein
1383	 44.77	0	1448558..1449895	+	445	16078447	ykvU	BSU13830	-	hypothetical protein
1384	 41.97	0	1449946..1450443	+	165	16078448	ykvV	BSU13840	-	hypothetical protein
1385	 46.55	0	1450679..1452592	+	637	16078449	ykvW	BSU13850	-	hypothetical protein
1386	 45.60	0	1452999..1454090	+	363	16078450	ykvY	BSU13860	-	hypothetical protein
1387	 44.00	0	1454372..1455337	+	321	16078451	ykvZ	BSU13870	-	hypothetical protein
1388	 37.88	-1	1455400..1456257	+	285	16078452	glcT	BSU13880	-	BglG family transcriptional antiterminator
1389	 45.33	0	1456496..1458595	+	699	16078453	ptsG	BSU13890	-	phosphotransferase system (PTS) glucose-specific enzyme IICBA component
1390	 40.82	0	1458693..1458959	+	88	16078454	ptsH	BSU13900	-	phosphocarrier protein HPr
1391	 43.78	0	1458959..1460671	+	570	50812224	ptsI	BSU13910	-	phosphotransferase system (PTS) enzyme I
1392	 41.67	0	1460762..1461001	+	79	16078456	splA	BSU13920	-	transcriptional regulator
1393	 41.89	0	1461079..1462107	+	342	16078457	splB	BSU13930	-	spore photoproduct (thymine dimer) lyase
1394	 43.30	0	1462280..1462801	-	173	16078458	ykwB	BSU13940	-	hypothetical protein
1395	 41.83	0	1462936..1464900	+	654	16078459	mcpC	BSU13950	-	methyl-accepting chemotaxis protein
1396	 43.83	0	1465037..1465903	+	288	16078460	ykwC	BSU13960	-	hypothetical protein
1397	 40.05	0	1465942..1466715	-	257	16078461	ykwD	BSU13970	-	hypothetical protein
1398	 40.28	0	1467109..1469166	+	685	16078462	ykuA	BSU13980	-	hypothetical protein
1399	 40.53	0	1469330..1471150	+	606	16078463	kinA	BSU13990	-	two-component sensor histidine kinase
1400	 43.26	0	1471161..1472339	-	392	16078464	patA	BSU14000	-	aminotransferase A
1401	 38.93	0	1472906..1473817	+	303	16078465	cheV	BSU14010	-	modulation of CheA activity in response to attractants (chemotaxis)
1402	 40.86	0	1473861..1474325	-	154	16078466	ykyB	BSU14020	-	hypothetical protein
1403	 42.54	0	1474451..1475743	-	430	16078467	ykuC	BSU14030	-	hypothetical protein
1404	 50.10	+1	1475819..1476313	-	164	16078468	ykuD	BSU14040	-	hypothetical protein
1405	 45.49	0	1476370..1477233	-	287	16078469	ykuE	BSU14050	-	hypothetical protein
1406	 50.85	+1	1477376..1478140	+	254	16078470	ykuF	BSU14060	-	short chain dehydrogenase
1407	 35.09	-1	1478441..1480723	+	760	16078471	ykuG	BSU14070	-	hypothetical protein
1408	 30.60	-2	1480853..1481401	+	182	16078472	ykuH	BSU14080	-	hypothetical protein
1409	 41.67	0	1481554..1482777	+	407	16078473	ykuI	BSU14090	-	hypothetical protein
1410	 38.33	-1	1483423..1483662	+	79	16078474	ykuJ	BSU14100	-	hypothetical protein
1411	 43.74	0	1483772..1484290	+	172	16078475	ykuK	BSU14110	-	hypothetical protein
1412	 38.89	0	1484424..1484621	+	65	16078476	ykzF	BSU14120	-	hypothetical protein
1413	 40.77	0	1484759..1485202	+	147	16078477	ykuL	BSU14130	-	hypothetical protein
1414	 41.95	0	1485351..1486232	+	293	16078478	ccpC	BSU14140	-	LysR family transcriptional regulator
1415	 41.72	0	1486344..1486820	+	158	16078479	ykuN	BSU14150	-	flavodoxin
1416	 43.85	0	1486810..1487703	+	297	16078480	ykuO	BSU14160	-	hypothetical protein
1417	 43.20	0	1487719..1488255	+	178	16078481	ykuP	BSU14170	-	hypothetical protein
1418	 44.16	0	1488280..1488990	+	236	16078482	ykuQ	BSU14180	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.