IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1253	 47.32	0	1322058..1322858	+	266	16078318	xkdC	BSU12530	-	hypothetical protein
1254	 45.58	0	1323110..1323460	+	116	16078319	xkdD	BSU12540	-	hypothetical protein
1255	 45.41	0	1323457..1323663	+	68	16078320	xtrA	BSU12550	-	hypothetical protein
1256	 42.94	0	1323779..1324288	+	169	16078321	xpf	BSU12560	-	positive control sigma-like factor
1257	 42.48	0	1324404..1325201	+	265	16078322	xtmA	BSU12570	-	PBSX defective prophage terminase (small subunit)
1258	 46.31	0	1325198..1326499	+	433	16078323	xtmB	BSU12580	-	PBSX defective prophage terminase (large subunit)
1259	 46.24	0	1326503..1327990	+	495	16078324	xkdE	BSU12590	-	hypothetical protein
1260	 49.03	+1	1328010..1328837	+	275	16078325	xkdF	BSU12600	-	hypothetical protein
1261	 47.76	0	1328863..1329798	+	311	16078326	xkdG	BSU12610	-	hypothetical protein
1262	 47.34	0	1330202..1330558	+	118	16078327	xkdH	BSU12620	-	hypothetical protein
1263	 49.18	+1	1330555..1331040	+	161	16078328	xkdI	BSU12630	-	hypothetical protein
1264	 49.66	+1	1331053..1331493	+	146	16078329	xkdJ	BSU12640	-	hypothetical protein
1265	 46.52	0	1331712..1333106	+	464	16078330	xkdK	BSU12650	-	hypothetical protein
1266	 45.95	0	1333113..1333556	+	147	16078331	xkdM	BSU12660	-	hypothetical protein
1267	 37.00	-1	1333648..1334274	+	208	16078332	xkdN	BSU12670	-	hypothetical protein
1268	 42.76	0	1334279..1338277	+	1332	16078333	xkdO	BSU12680	-	hypothetical protein
1269	 42.51	0	1338222..1338929	+	235	16078334	xkdP	BSU12690	-	hypothetical protein
1270	 47.85	0	1338945..1339922	+	325	16078335	xkdQ	BSU12700	-	hypothetical protein
1271	 48.69	+1	1339922..1340188	+	88	16078336	xkdR	BSU12710	-	hypothetical protein
1272	 44.60	0	1340245..1340670	+	141	16078337	xkdS	BSU12720	-	hypothetical protein
1273	 47.37	0	1340663..1341709	+	348	16078338	xkdT	BSU12730	-	hypothetical protein
1274	 48.53	+1	1341693..1342271	+	192	16078339	xkdU	BSU12740	-	hypothetical protein
1275	 38.18	-1	1342542..1344605	+	687	16078340	xkdV	BSU12750	-	hypothetical protein
1276	 45.15	0	1344617..1344946	+	109	16078341	xkdW	BSU12760	-	hypothetical protein
1277	 42.42	0	1344943..1345107	+	54	16078342	xkdX	BSU12770	-	hypothetical protein
1278	 47.26	0	1345151..1345990	+	279	16078343	xepA	BSU12780	-	lytic exoenzyme associated with defective prophage PBSX
1279	 47.41	0	1346043..1346312	+	89	16078344	xhlA	BSU12790	-	involved in cell lysis upon induction of defective prophage PBSX
1280	 43.94	0	1346325..1346588	+	87	16078345	xhlB	BSU12800	-	holin
1281	 47.09	0	1346601..1347494	+	297	16078346	xlyA	BSU12810	-	N-acetylmuramoyl-L-alanine amidase
1282	 44.44	0	1347754..1347924	-	56	16078347	spoIISB	BSU12820	-	sporulation protein IISB
1283	 42.17	0	1347924..1348670	-	248	16078348	spoIISA	BSU12830	-	sporulation protein IISA
1284	 45.59	0	1348794..1349780	-	328	16078349	pit	BSU12840	-	low-affinity inorganic phosphate transporter
1285	 35.92	-1	1349793..1350410	-	205	16078350	ykaA	BSU12850	-	hypothetical protein
1286	 45.48	0	1350686..1352002	-	438	16078351	ykbA	BSU12860	-	hypothetical protein
1287	 46.90	0	1352391..1353341	+	316	16078352	ykcA	BSU12870	-	hypothetical protein
1288	 46.26	0	1353592..1355742	+	716	16078353	ykcB	BSU12880	-	hypothetical protein
1289	 43.11	0	1355754..1356725	+	323	16078354	ykcC	BSU12890	-	hypothetical protein
1290	 44.52	0	1357243..1358592	-	449	16078355	htrA	BSU12900	-	serine protease Do (heat-shock protein)
1291	 46.64	0	1358761..1359579	+	272	16078356	proG	BSU12910	-	pyrroline-5-carboxylate reductase
1292	 48.85	+1	1359708..1360532	+	274	16078357	dppA	BSU12920	-	D-alanyl-aminopeptidase
1293	 46.39	0	1360549..1361475	+	308	16078358	dppB	BSU12930	-	dipeptide ABC transporter (permease)
1294	 49.95	+1	1361481..1362443	+	320	16078359	dppC	BSU12940	-	dipeptide ABC transporter (permease)
1295	 51.98	+1	1362448..1363455	+	335	16078360	dppD	BSU12950	-	peptide ABC transporter ATP-binding protein
1296	 44.61	0	1363458..1365107	+	549	16078361	dppE	BSU12960	-	dipeptide ABC transporter (dipeptide-binding protein)
1297	 49.93	+1	1365448..1366152	+	234	16078362	ykfA	BSU12970	-	hypothetical protein
1298	 50.23	+1	1366149..1367249	+	366	16078363	ykfB	BSU12980	-	hypothetical protein
1299	 47.36	0	1367246..1368136	+	296	16078364	ykfC	BSU12990	-	hypothetical protein
1300	 50.41	+1	1368149..1369132	+	327	16078365	ykfD	BSU13000	-	hypothetical protein
1301	 45.62	0	1369180..1370229	-	349	16078366	ykgB	BSU13010	-	hypothetical protein
1302	 43.94	0	1370389..1371180	-	263	16078367	ykgA	BSU13020	-	hypothetical protein
1303	 46.05	0	1371340..1371858	+	172	50812222	ykhA	BSU13030	-	hypothetical protein
1304	 44.17	0	1372097..1373296	+	399	16078369	hmp	BSU13040	-	nitric oxide dioxygenase
1305	 47.56	0	1373373..1373597	-	74	16078370	ykzH	BSU13050	-	hypothetical protein
1306	 43.85	0	1373742..1374473	+	243	16078371	ykjA	BSU13060	-	hypothetical protein
1307	 46.59	0	1374565..1375092	+	175	16078372	ykkA	BSU13070	-	hypothetical protein
1308	 47.78	0	1375082..1375600	+	172	16078373	ykkB	BSU13080	-	hypothetical protein
1309	 49.26	+1	1375823..1376161	+	112	16078374	ykkC	BSU13090	-	hypothetical protein
1310	 48.11	+1	1376161..1376478	+	105	16078375	ykkD	BSU13100	-	hypothetical protein
1311	 47.62	0	1376549..1377451	+	300	16078376	purU	BSU13110	-	formyltetrahydrofolate deformylase
1312	 46.63	0	1377802..1378899	+	365	16078377	proB	BSU13120	-	gamma-glutamyl kinase
1313	 47.36	0	1378911..1380158	+	415	16078378	proA	BSU13130	-	gamma-glutamyl phosphate reductase
1314	 48.36	+1	1380284..1380709	+	141	16078379	yklA	BSU13140	-	hypothetical protein
1315	 40.54	0	1380740..1381183	-	147	16078380	ykmA	BSU13150	-	hypothetical protein
1316	 46.23	0	1381326..1381736	+	136	16078381	ykzA	BSU13160	-	hypothetical protein
1317	 47.56	0	1381983..1382453	-	156	16078382	guaD	BSU13170	-	guanine deaminase
1318	 45.26	0	1382626..1384914	-	762	16078383	metE	BSU13180	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1319	 47.08	0	1385330..1386289	-	319	16078384	ispA	BSU13190	-	intracellular serine protease
1320	 41.25	0	1386512..1387345	+	277	16078385	ykoB	BSU13200	-	hypothetical protein
1321	 46.27	0	1387376..1388140	-	254	16078386	ykoC	BSU13210	-	hypothetical protein
1322	 46.57	0	1388287..1389759	-	490	16078387	ykoD	BSU13220	-	hypothetical protein
1323	 48.00	+1	1389746..1390345	-	199	16078388	ykoE	BSU13230	-	hypothetical protein
1324	 47.43	0	1390347..1390949	-	200	16078389	ykoF	BSU13240	-	hypothetical protein
1325	 46.87	0	1391260..1391946	+	228	16078390	ykoG	BSU13250	-	hypothetical protein
1326	 46.23	0	1391950..1393314	+	454	16078391	ykoH	BSU13260	-	hypothetical protein
1327	 41.41	0	1393311..1393991	+	226	16078392	ykoI	BSU13270	-	hypothetical protein
1328	 41.52	0	1394083..1394595	+	170	16078393	ykoJ	BSU13280	-	hypothetical protein
1329	 39.13	0	1394678..1394815	+	45	16078394	ykzD	BSU13290	-	hypothetical protein
1330	 42.85	0	1395321..1396676	+	451	16078395	ykoK	BSU13300	-	hypothetical protein
1331	 42.64	0	1396719..1397051	-	110	16078396	tnrA	BSU13310	-	transcriptional regulator
1332	 39.74	0	1397246..1397401	+	51	16078397	ykzB	BSU13320	-	hypothetical protein
1333	 30.60	-2	1397489..1397671	+	60	16078398	ykoL	BSU13330	-	hypothetical protein
1334	 42.58	0	1397804..1398268	+	154	16078399	ykoM	BSU13340	-	hypothetical protein
1335	 42.69	0	1398283..1399404	-	373	16078400	ykoN	BSU13350	-	hypothetical protein
1336	 38.59	-1	1399496..1400047	+	183	16078401	ykoP	BSU13360	-	hypothetical protein
1337	 40.84	0	1400075..1400887	-	270	16078402	ykoQ	BSU13370	-	hypothetical protein
1338	 42.01	0	1401080..1402774	+	564	16078403	ykoS	BSU13380	-	hypothetical protein
1339	 42.90	0	1402787..1403800	+	337	16078404	ykoT	BSU13390	-	hypothetical protein
1340	 45.10	0	1403826..1405661	-	611	16078405	ligD	BSU13400	-	ATP-dependent DNA ligase
1341	 45.19	0	1405665..1406600	-	311	16078406	ykoV	BSU13410	-	hypothetical protein
1342	 40.58	0	1406637..1408886	-	749	50812223	ykoW	BSU13420	-	hypothetical protein
1343	 43.09	0	1409220..1409885	+	221	16078407	ykoX	BSU13430	-	hypothetical protein
1344	 45.64	0	1409962..1410936	+	324	16078408	ykoY	BSU13440	-	hypothetical protein
1345	 37.30	-1	1411200..1411955	+	251	16078409	sigI	BSU13450	-	putative RNA polymerase sigma factor SigI
1346	 39.88	0	1411952..1413097	+	381	16078410	ykrI	BSU13460	-	hypothetical protein
1347	 47.18	0	1413108..1413302	-	64	16078411	sspD	BSU13470	-	small acid-soluble spore protein (alpha/beta-type SASP)
1348	 41.03	0	1413433..1414134	-	233	16078412	ykrK	BSU13480	-	hypothetical protein
1349	 45.93	0	1414305..1415201	+	298	16078413	ykrL	BSU13490	-	heat shock protein HtpX
1350	 44.07	0	1415375..1416724	+	449	16078414	ykrM	BSU13500	-	hypothetical protein
1351	 37.29	-1	1417027..1417203	+	58	16078415	ykzE	BSU13510	-	hypothetical protein
1352	 41.45	0	1417246..1418268	-	340	16078416	ykrP	BSU13520	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.