IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1211	 43.46	0	1281882..1282355	-	157	16078276	yjfA	BSU12110	-	hypothetical protein
1212	 41.07	0	1282480..1282647	-	55	16078277	yjfB	BSU12120	-	hypothetical protein
1213	 43.66	0	1282774..1283703	+	309	16078278	yjfC	BSU12130	-	hypothetical protein
1214	 46.12	0	1283681..1284079	-	132	16078279	yjgA	BSU12140	-	hypothetical protein
1215	 47.22	0	1284180..1284755	-	191	16078280	yjgB	BSU12150	-	hypothetical protein
1216	 48.99	+1	1284901..1287858	+	985	16078281	yjgC	BSU12160	-	hypothetical protein
1217	 45.28	0	1287851..1288411	+	186	16078282	yjgD	BSU12170	-	hypothetical protein
1218	 36.60	-1	1288608..1289249	+	213	16078283	yjhA	BSU12180	-	hypothetical protein
1219	 49.71	+1	1289442..1289954	+	170	16078284	yjhB	BSU12190	-	hypothetical protein
1220	 39.07	0	1289985..1290263	-	92	16078285	yjiA	BSU12200	-	hypothetical protein
1221	 46.94	0	1290654..1291844	+	396	16078286	yjiB	BSU12210	-	hypothetical protein
1222	 46.31	0	1291867..1293045	+	392	16078287	yjiC	BSU12220	-	hypothetical protein
1223	 50.31	+1	1293448..1294260	+	270	16078288	hemD	BSU12230	-	uroporphyrinogen-III synthase
1224	 46.88	0	1294306..1295058	-	250	16078289	yjkA	BSU12240	-	hypothetical protein
1225	 49.27	+1	1295058..1295810	-	250	16078290	yjkB	BSU12250	-	hypothetical protein
1226	 46.67	0	1295930..1296904	-	324	16078291	yjlA	BSU12260	-	hypothetical protein
1227	 52.01	+1	1297036..1297533	+	165	16078292	yjlB	BSU12270	-	hypothetical protein
1228	 43.50	0	1297922..1298344	+	140	16078293	yjlC	BSU12280	-	hypothetical protein
1229	 44.95	0	1298384..1299562	+	392	16078294	yjlD	BSU12290	-	hypothetical protein
1230	 43.25	0	1299760..1301181	+	473	16078295	uxaC	BSU12300	-	glucuronate isomerase
1231	 44.64	0	1301249..1302628	+	459	16078296	yjmB	BSU12310	-	hypothetical protein
1232	 48.72	+1	1302733..1303746	+	337	16078297	yjmC	BSU12320	-	hypothetical protein
1233	 50.69	+1	1303752..1304771	+	339	16078298	yjmD	BSU12330	-	hypothetical protein
1234	 47.22	0	1304796..1305875	+	359	16078299	uxuA	BSU12340	-	mannonate dehydratase
1235	 52.09	+1	1305872..1306708	+	278	16078300	yjmF	BSU12350	-	D-mannonate oxidoreductase
1236	 49.01	+1	1306756..1308024	+	422	16078301	exuT	BSU12360	-	hexuronate transporter
1237	 43.81	0	1308112..1309113	+	333	16078302	exuR	BSU12370	-	LacI family transcription regulator
1238	 42.90	0	1309190..1310632	+	480	16078303	uxaB	BSU12380	-	altronate oxidoreductase
1239	 46.12	0	1310629..1312122	+	497	16078304	uxaA	BSU12390	-	altronate hydrolase
1240	 45.23	0	1312161..1312925	-	254	16078305	yjnA	BSU12400	-	hypothetical protein
1241	 44.73	0	1313150..1313614	-	154	16078306	yjoA	BSU12410	-	hypothetical protein
1242	 43.87	0	1313763..1315034	+	423	16078307	yjoB	BSU12420	-	hypothetical protein
1243	 39.40	0	1315179..1316315	+	378	16078308	rapA	BSU12430	-	response regulator aspartate phosphatase
1244	 43.70	0	1316305..1316439	+	44	16078309	phrA	BSU12440	-	inhibitor of the activity of phosphatase RapA
1245	 47.33	0	1316470..1316712	-	80	16078310	yjpA	BSU12450	-	hypothetical protein
1246	 49.27	+1	1316849..1317802	+	317	16078311	xlyB	BSU12460	-	N-acetylmuramoyl-L-alanine amidase
1247	 43.92	0	1317839..1318216	-	125	16078312	yjqA	BSU12470	-	hypothetical protein
1248	 47.10	0	1318322..1318924	+	200	16078313	yjqB	BSU12480	-	hypothetical protein
1249	 48.63	+1	1319001..1319837	+	278	16078314	yjqC	BSU12490	-	hypothetical protein
1250	 44.72	0	1319881..1320477	-	198	50812221	xkdA	BSU12500	-	hypothetical protein
1251	 43.27	0	1320640..1320981	-	113	16078316	xre	BSU12510	-	transcriptional regulator
1252	 46.04	0	1321325..1322158	+	277	16078317	xkdB	BSU12520	-	hypothetical protein
1253	 47.32	0	1322058..1322858	+	266	16078318	xkdC	BSU12530	-	hypothetical protein
1254	 45.58	0	1323110..1323460	+	116	16078319	xkdD	BSU12540	-	hypothetical protein
1255	 45.41	0	1323457..1323663	+	68	16078320	xtrA	BSU12550	-	hypothetical protein
1256	 42.94	0	1323779..1324288	+	169	16078321	xpf	BSU12560	-	positive control sigma-like factor
1257	 42.48	0	1324404..1325201	+	265	16078322	xtmA	BSU12570	-	PBSX defective prophage terminase (small subunit)
1258	 46.31	0	1325198..1326499	+	433	16078323	xtmB	BSU12580	-	PBSX defective prophage terminase (large subunit)
1259	 46.24	0	1326503..1327990	+	495	16078324	xkdE	BSU12590	-	hypothetical protein
1260	 49.03	+1	1328010..1328837	+	275	16078325	xkdF	BSU12600	-	hypothetical protein
1261	 47.76	0	1328863..1329798	+	311	16078326	xkdG	BSU12610	-	hypothetical protein
1262	 47.34	0	1330202..1330558	+	118	16078327	xkdH	BSU12620	-	hypothetical protein
1263	 49.18	+1	1330555..1331040	+	161	16078328	xkdI	BSU12630	-	hypothetical protein
1264	 49.66	+1	1331053..1331493	+	146	16078329	xkdJ	BSU12640	-	hypothetical protein
1265	 46.52	0	1331712..1333106	+	464	16078330	xkdK	BSU12650	-	hypothetical protein
1266	 45.95	0	1333113..1333556	+	147	16078331	xkdM	BSU12660	-	hypothetical protein
1267	 37.00	-1	1333648..1334274	+	208	16078332	xkdN	BSU12670	-	hypothetical protein
1268	 42.76	0	1334279..1338277	+	1332	16078333	xkdO	BSU12680	-	hypothetical protein
1269	 42.51	0	1338222..1338929	+	235	16078334	xkdP	BSU12690	-	hypothetical protein
1270	 47.85	0	1338945..1339922	+	325	16078335	xkdQ	BSU12700	-	hypothetical protein
1271	 48.69	+1	1339922..1340188	+	88	16078336	xkdR	BSU12710	-	hypothetical protein
1272	 44.60	0	1340245..1340670	+	141	16078337	xkdS	BSU12720	-	hypothetical protein
1273	 47.37	0	1340663..1341709	+	348	16078338	xkdT	BSU12730	-	hypothetical protein
1274	 48.53	+1	1341693..1342271	+	192	16078339	xkdU	BSU12740	-	hypothetical protein
1275	 38.18	-1	1342542..1344605	+	687	16078340	xkdV	BSU12750	-	hypothetical protein
1276	 45.15	0	1344617..1344946	+	109	16078341	xkdW	BSU12760	-	hypothetical protein
1277	 42.42	0	1344943..1345107	+	54	16078342	xkdX	BSU12770	-	hypothetical protein
1278	 47.26	0	1345151..1345990	+	279	16078343	xepA	BSU12780	-	lytic exoenzyme associated with defective prophage PBSX
1279	 47.41	0	1346043..1346312	+	89	16078344	xhlA	BSU12790	-	involved in cell lysis upon induction of defective prophage PBSX
1280	 43.94	0	1346325..1346588	+	87	16078345	xhlB	BSU12800	-	holin
1281	 47.09	0	1346601..1347494	+	297	16078346	xlyA	BSU12810	-	N-acetylmuramoyl-L-alanine amidase
1282	 44.44	0	1347754..1347924	-	56	16078347	spoIISB	BSU12820	-	sporulation protein IISB
1283	 42.17	0	1347924..1348670	-	248	16078348	spoIISA	BSU12830	-	sporulation protein IISA
1284	 45.59	0	1348794..1349780	-	328	16078349	pit	BSU12840	-	low-affinity inorganic phosphate transporter
1285	 35.92	-1	1349793..1350410	-	205	16078350	ykaA	BSU12850	-	hypothetical protein
1286	 45.48	0	1350686..1352002	-	438	16078351	ykbA	BSU12860	-	hypothetical protein
1287	 46.90	0	1352391..1353341	+	316	16078352	ykcA	BSU12870	-	hypothetical protein
1288	 46.26	0	1353592..1355742	+	716	16078353	ykcB	BSU12880	-	hypothetical protein
1289	 43.11	0	1355754..1356725	+	323	16078354	ykcC	BSU12890	-	hypothetical protein
1290	 44.52	0	1357243..1358592	-	449	16078355	htrA	BSU12900	-	serine protease Do (heat-shock protein)
1291	 46.64	0	1358761..1359579	+	272	16078356	proG	BSU12910	-	pyrroline-5-carboxylate reductase
1292	 48.85	+1	1359708..1360532	+	274	16078357	dppA	BSU12920	-	D-alanyl-aminopeptidase
1293	 46.39	0	1360549..1361475	+	308	16078358	dppB	BSU12930	-	dipeptide ABC transporter (permease)
1294	 49.95	+1	1361481..1362443	+	320	16078359	dppC	BSU12940	-	dipeptide ABC transporter (permease)
1295	 51.98	+1	1362448..1363455	+	335	16078360	dppD	BSU12950	-	peptide ABC transporter ATP-binding protein
1296	 44.61	0	1363458..1365107	+	549	16078361	dppE	BSU12960	-	dipeptide ABC transporter (dipeptide-binding protein)
1297	 49.93	+1	1365448..1366152	+	234	16078362	ykfA	BSU12970	-	hypothetical protein
1298	 50.23	+1	1366149..1367249	+	366	16078363	ykfB	BSU12980	-	hypothetical protein
1299	 47.36	0	1367246..1368136	+	296	16078364	ykfC	BSU12990	-	hypothetical protein
1300	 50.41	+1	1368149..1369132	+	327	16078365	ykfD	BSU13000	-	hypothetical protein
1301	 45.62	0	1369180..1370229	-	349	16078366	ykgB	BSU13010	-	hypothetical protein
1302	 43.94	0	1370389..1371180	-	263	16078367	ykgA	BSU13020	-	hypothetical protein
1303	 46.05	0	1371340..1371858	+	172	50812222	ykhA	BSU13030	-	hypothetical protein
1304	 44.17	0	1372097..1373296	+	399	16078369	hmp	BSU13040	-	nitric oxide dioxygenase
1305	 47.56	0	1373373..1373597	-	74	16078370	ykzH	BSU13050	-	hypothetical protein
1306	 43.85	0	1373742..1374473	+	243	16078371	ykjA	BSU13060	-	hypothetical protein
1307	 46.59	0	1374565..1375092	+	175	16078372	ykkA	BSU13070	-	hypothetical protein
1308	 47.78	0	1375082..1375600	+	172	16078373	ykkB	BSU13080	-	hypothetical protein
1309	 49.26	+1	1375823..1376161	+	112	16078374	ykkC	BSU13090	-	hypothetical protein
1310	 48.11	+1	1376161..1376478	+	105	16078375	ykkD	BSU13100	-	hypothetical protein
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.