IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1101	 48.29	+1	1178062..1179900	-	612	16078165	yitJ	BSU11010	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1102	 42.28	0	1180214..1180705	-	163	16078166	yitK	BSU11020	-	nucleotide-binding protein
1103	 46.71	0	1180804..1181700	+	298	16078167	yitL	BSU11030	-	hypothetical protein
1104	 41.71	0	1181753..1182337	-	194	16078168	yitM	BSU11040	-	hypothetical protein
1105	 43.90	0	1182334..1182702	-	122	16078169	yitN	BSU11050	-	hypothetical protein
1106	 50.70	+1	1182834..1183046	-	70	16078170	yitO	BSU11060	-	hypothetical protein
1107	 46.37	0	1183247..1183783	-	178	16078171	yitP	BSU11070	-	hypothetical protein
1108	 45.53	0	1184155..1184892	+	245	16078172	yitQ	BSU11080	-	hypothetical protein
1109	 39.12	0	1184912..1185205	+	97	16078173	yitR	BSU11090	-	hypothetical protein
1110	 45.58	0	1185341..1186957	+	538	16078174	nprB	BSU11100	-	extracellular neutral protease B
1111	 45.89	0	1187004..1187855	-	283	16078175	yitS	BSU11110	-	hypothetical protein
1112	 44.48	0	1187993..1188835	+	280	16078176	yitT	BSU11120	-	hypothetical protein
1113	 41.11	0	1188950..1189309	+	119	16078177	ipi	BSU11130	-	intracellular proteinase inhibitor BsuPI
1114	 45.63	0	1189794..1190606	-	270	16078178	yitU	BSU11140	-	hypothetical protein
1115	 48.83	+1	1190727..1191494	+	255	16078179	yitV	BSU11150	-	hypothetical protein
1116	 45.95	0	1191558..1191866	+	102	16078180	yitW	BSU11160	-	hypothetical protein
1117	 44.86	0	1192162..1193592	+	476	50812216	yitY	BSU11170	-	hypothetical protein
1118	 44.24	0	1193637..1194131	+	164	16078183	yitZ	BSU11180	-	hypothetical protein
1119	 46.21	0	1194338..1195378	+	346	16078184	argC	BSU11190	-	N-acetyl-gamma-glutamyl-phosphate reductase
1120	 49.71	+1	1195398..1196618	+	406	16078185	argJ	BSU11200	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1121	 48.13	+1	1196633..1197409	+	258	16078186	argB	BSU11210	-	acetylglutamate kinase
1122	 49.57	+1	1197406..1198563	+	385	16078187	argD	BSU11220	-	acetylornithine aminotransferase
1123	 46.89	0	1198634..1199695	+	353	16078188	carA	BSU11230	-	carbamoyl phosphate synthase small subunit
1124	 46.94	0	1199688..1202780	+	1030	50812217	carB	BSU11240	-	carbamoyl phosphate synthase large subunit
1125	 48.44	+1	1202768..1203727	+	319	16078190	argF	BSU11250	-	ornithine carbamoyltransferase
1126	 52.22	+1	1203813..1203992	+	59	16078191	yjzC	BSU11260	-	hypothetical protein
1127	 36.02	-1	1204038..1204223	-	61	16078192	yjzD	BSU11270	-	hypothetical protein
1128	 42.86	0	1204472..1205206	+	244	16078193	yjaU	BSU11280	-	hypothetical protein
1129	 40.44	0	1205288..1205695	+	135	16078194	yjaV	BSU11290	-	hypothetical protein
1130	 43.08	0	1205937..1206890	+	317	50812218	med	BSU11300	-	positive regulator of comK
1131	 41.67	0	1206905..1207096	+	63	16078196	comZ	BSU11310	-	late competence gene
1132	 41.25	0	1207126..1207365	-	79	16078197	yjzB	BSU11320	-	hypothetical protein
1133	 46.22	0	1207530..1208468	+	312	16078198	fabHA	BSU11330	-	3-oxoacyl-(acyl carrier protein) synthase III
1134	 46.70	0	1208491..1209732	+	413	16078199	fabF	BSU11340	-	3-oxoacyl-(acyl carrier protein) synthase II
1135	 43.00	0	1209808..1210593	+	261	16078200	yjaZ	BSU11350	-	hypothetical protein
1136	 45.90	0	1210785..1211771	+	328	16078201	appD	BSU11360	-	oligopeptide ABC transporter ATP-binding protein
1137	 45.96	0	1211768..1212757	+	329	16078202	appF	BSU11370	-	oligopeptide ABC transporter ATP-binding protein
1138	 40.01	0	1212845..1214476	+	543	16078203	appA	BSU11380	-	oligopeptide ABC transporter (oligopeptide-binding protein)
1139	 41.93	0	1214552..1215505	+	317	16078204	appB	BSU11390	-	oligopeptide ABC transporter (permease)
1140	 43.20	0	1215522..1216433	+	303	16078205	appC	BSU11400	-	oligopeptide ABC transporter (permease)
1141	 41.83	0	1216639..1217391	+	250	16078206	yjbA	BSU11410	-	hypothetical protein
1142	 45.32	0	1217426..1218418	-	330	16078207	trpS	BSU11420	-	tryptophanyl-tRNA synthetase
1143	 41.45	0	1219162..1220799	+	545	16078208	oppA	BSU11430	-	oligopeptide ABC transporter (binding protein)
1144	 44.66	0	1220907..1221842	+	311	16078209	oppB	BSU11440	-	oligopeptide ABC transporter (permease)
1145	 44.77	0	1221846..1222763	+	305	16078210	oppC	BSU11450	-	oligopeptide ABC transporter (permease)
1146	 47.08	0	1222768..1223844	+	358	16078211	oppD	BSU11460	-	oligopeptide ABC transporter ATP-binding protein
1147	 44.88	0	1223846..1224763	+	305	16078212	oppF	BSU11470	-	oligopeptide ABC transporter ATP-binding protein
1148	 45.65	0	1224870..1226087	+	405	50812219	yjbB	BSU11480	-	hypothetical protein
1149	 38.17	-1	1226251..1226829	+	192	16078214	yjbC	BSU11490	-	hypothetical protein
1150	 41.92	0	1227010..1227405	+	131	16078215	spxA	BSU11500	-	transcriptional regulator Spx
1151	 46.42	0	1227448..1228104	-	218	16078216	yjbE	BSU11510	-	hypothetical protein
1152	 40.03	0	1228381..1229037	+	218	16078217	mecA	BSU11520	-	adaptor protein
1153	 44.92	0	1229228..1230349	+	373	16078218	yjbF	BSU11530	-	hypothetical protein
1154	 43.93	0	1230579..1232408	+	609	16078219	yjbG	BSU11540	-	hypothetical protein
1155	 42.27	0	1232926..1233753	-	275	16078220	yjbH	BSU11550	-	hypothetical protein
1156	 47.62	0	1233822..1234220	-	132	16078221	yjbI	BSU11560	-	hypothetical protein
1157	 46.52	0	1234475..1235020	-	181	16078222	yjbJ	BSU11570	-	hypothetical protein
1158	 41.54	0	1235224..1235796	-	190	16078223	yjbK	BSU11580	-	hypothetical protein
1159	 39.57	0	1235921..1236289	+	122	16078224	yjbL	BSU11590	-	hypothetical protein
1160	 45.44	0	1236318..1236953	+	211	16078225	yjbM	BSU11600	-	hypothetical protein
1161	 45.57	0	1236972..1237772	+	266	16078226	ppnK	BSU11610	-	inorganic polyphosphate/ATP-NAD kinase
1162	 49.77	+1	1237835..1238686	+	283	16078227	yjbO	BSU11620	-	hypothetical protein
1163	 46.53	0	1238699..1239433	-	244	16078228	yjbP	BSU11630	-	bis(5'-nucleosyl)-tetraphosphatase PrpE
1164	 43.85	0	1239668..1241512	+	614	16078229	yjbQ	BSU11640	-	hypothetical protein
1165	 48.80	+1	1241761..1242471	+	236	16078230	tenA	BSU11650	-	transcriptional regulator
1166	 48.22	+1	1242446..1243063	+	205	16078231	tenI	BSU11660	-	transcriptional regulator TenI
1167	 48.47	+1	1243047..1244156	+	369	16078232	goxB	BSU11670	-	glycine oxidase
1168	 40.80	0	1244156..1244356	+	66	16078233	thiS	BSU11680	-	hydroxyethylthiazole phosphate biosynthesis (thiamine biosynthesis)
1169	 49.03	+1	1244353..1245123	+	256	16078234	thiG	BSU11690	-	thiazole synthase
1170	 51.04	+1	1245120..1246130	+	336	16078235	thiF	BSU11700	-	thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein
1171	 49.51	+1	1246149..1246964	+	271	16078236	yjbV	BSU11710	-	phosphomethylpyrimidine kinase
1172	 48.13	+1	1247100..1247876	+	258	50812220	fabI	BSU11720	-	enoyl-(acyl carrier protein) reductase
1173	 48.68	+1	1247977..1248660	+	227	16078238	yjbX	BSU11730	-	hypothetical protein
1174	 42.28	0	1248754..1249200	-	148	16078239	cotZ	BSU11740	-	spore coat protein (insoluble fraction)
1175	 45.40	0	1249328..1249816	-	162	16078240	cotY	BSU11750	-	spore coat protein (insoluble fraction)
1176	 41.62	0	1249968..1250486	-	172	16078241	cotX	BSU11760	-	spore coat protein (insoluble fraction)
1177	 35.85	-1	1250585..1250902	-	105	16078242	cotW	BSU11770	-	spore coat protein (insoluble fraction)
1178	 40.05	0	1250943..1251329	-	128	16078243	cotV	BSU11780	-	spore coat protein (insoluble fraction)
1179	 50.70	+1	1251489..1251845	+	118	16078244	yjcA	BSU11790	-	hypothetical protein
1180	 42.13	0	1252170..1252385	+	71	16078245	yjcB	BSU11800	-	hypothetical protein
1181	 36.96	-1	1252649..1252951	+	100	16078246	yjcC	BSU11810	-	hypothetical protein
1182	 46.40	0	1253025..1255304	-	759	16078247	yjcD	BSU11820	-	hypothetical protein
1183	 39.93	0	1255385..1255687	-	100	16078248	yjcE	BSU11830	-	hypothetical protein
1184	 47.52	0	1255748..1256170	-	140	16078249	yjcF	BSU11840	-	hypothetical protein
1185	 43.60	0	1256174..1256689	-	171	16078250	yjcG	BSU11850	-	hypothetical protein
1186	 45.92	0	1256726..1257448	-	240	16078251	yjcH	BSU11860	-	hypothetical protein
1187	 47.95	+1	1257804..1258925	+	373	16078252	yjcI	BSU11870	-	cystathionine gamma-synthase
1188	 50.90	+1	1258918..1260090	+	390	16078253	yjcJ	BSU11880	-	cystathionine beta-lyase
1189	 42.31	0	1260123..1260668	-	181	16078254	yjcK	BSU11890	-	hypothetical protein
1190	 45.93	0	1260738..1261928	-	396	16078255	yjcL	BSU11900	-	hypothetical protein
1191	 31.30	-2	1263014..1264243	-	409	16078256	yjcM	BSU11910	-	hypothetical protein
1192	 36.45	-1	1264369..1264689	+	106	16078257	yjcN	BSU11920	-	hypothetical protein
1193	 43.72	0	1265199..1265660	+	153	16078258	yjcO	BSU11930	-	hypothetical protein
1194	 29.56	-2	1265926..1266429	+	167	16078259	yjcP	BSU11940	-	hypothetical protein
1195	 32.63	-2	1266441..1266725	+	94	16078260	yjcQ	BSU11950	-	hypothetical protein
1196	 44.13	0	1266886..1267413	+	175	16078261	yjcR	BSU11960	-	hypothetical protein
1197	 34.59	-1	1267587..1267904	+	105	16078262	yjcS	BSU11970	-	hypothetical protein
1198	 38.62	-1	1268141..1268896	+	251	16078263	fabG	BSU11980	-	3-ketoacyl-(acyl-carrier-protein) reductase
1199	 35.34	-1	1269045..1269392	-	115	16078264	yjdB	BSU11990	-	hypothetical protein
1200	 40.47	0	1269943..1271889	+	648	16078265	manR	BSU12000	-	transcriptional regulator
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.