IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1064	 51.62	+1	1142882..1144057	+	391	50812209	sbcD	BSU10640	-	exonuclease SbcD-like protein
1065	 48.10	+1	1144054..1147446	+	1130	16078129	yirY	BSU10650	-	hypothetical protein
1066	 45.21	0	1147460..1147762	+	100	16078130	yisB	BSU10660	-	hypothetical protein
1067	 44.30	0	1147799..1148026	-	75	16078131	gerPF	BSU10670	-	spore germination protein
1068	 46.02	0	1148049..1148450	-	133	16078132	gerPE	BSU10680	-	spore germination protein
1069	 46.89	0	1148450..1148626	-	58	16078133	gerPD	BSU10690	-	spore germination protein
1070	 44.01	0	1148623..1149240	-	205	16078134	gerPC	BSU10700	-	spore germination protein
1071	 49.79	+1	1149263..1149505	-	80	16078135	gerPB	BSU10710	-	spore germination protein
1072	 50.45	+1	1149511..1149732	-	73	16078136	gerPA	BSU10720	-	spore germination protein
1073	 36.26	-1	1150155..1150325	-	56	16078137	yisI	BSU10730	-	hypothetical protein
1074	 45.35	0	1150471..1151394	-	307	16078138	yisJ	BSU10740	-	hypothetical protein
1075	 46.47	0	1151549..1152454	+	301	16078139	yisK	BSU10750	-	hypothetical protein
1076	 45.38	0	1152570..1152926	+	118	16078140	yisL	BSU10760	-	hypothetical protein
1077	 44.92	0	1153094..1155778	+	894	16078141	wprA	BSU10770	-	cell wall-associated protein precursor (CWBP23, CWBP52)
1078	 48.47	+1	1155809..1156396	-	195	16078142	yisN	BSU10780	-	hypothetical protein
1079	 47.53	0	1156542..1158386	+	614	50812210	asnO	BSU10790	-	asparagine synthetase
1080	 34.38	-1	1158516..1158995	-	159	50812211	yizA	BSU10800	-	hypothetical protein
1081	 46.79	0	1159227..1160051	+	274	16078144	yisP	BSU10810	-	hypothetical protein
1082	 45.39	0	1160081..1161448	-	455	16078145	yisQ	BSU10820	-	hypothetical protein
1083	 47.45	0	1161572..1162435	+	287	16078146	yisR	BSU10830	-	hypothetical protein
1084	 47.63	0	1162453..1163466	+	337	16078147	degA	BSU10840	-	LacI family transcription regulator
1085	 48.40	+1	1163675..1164703	+	342	16078148	yisS	BSU10850	-	hypothetical protein
1086	 45.88	0	1164754..1165263	-	169	50812212	yisT	BSU10860	-	hypothetical protein
1087	 47.81	0	1165313..1165975	-	220	16078150	yisU	BSU10870	-	hypothetical protein
1088	 49.97	+1	1166042..1167496	+	484	50812213	yisV	BSU10880	-	hypothetical protein
1089	 44.91	0	1167504..1168142	-	212	16078153	yisX	BSU10890	-	hypothetical protein
1090	 47.46	0	1168348..1169154	+	268	16078154	yisY	BSU10900	-	hypothetical protein
1091	 46.83	0	1169182..1169781	-	199	16078155	yisZ	BSU10910	-	hypothetical protein
1092	 50.09	+1	1169778..1170947	-	389	50812214	sat	BSU10920	-	sulfate adenylyltransferase
1093	 48.24	+1	1171060..1171770	-	236	50812215	yitB	BSU10930	-	hypothetical protein
1094	 46.87	0	1171955..1172641	+	228	16078158	yitC	BSU10940	-	hypothetical protein
1095	 42.82	0	1172638..1173396	+	252	16078159	yitD	BSU10950	-	hypothetical protein
1096	 45.87	0	1173441..1174070	-	209	16078160	yitE	BSU10960	-	hypothetical protein
1097	 50.27	+1	1174166..1175281	-	371	16078161	yitF	BSU10970	-	hypothetical protein
1098	 45.63	0	1175290..1176558	-	422	16078162	yitG	BSU10980	-	hypothetical protein
1099	 46.41	0	1176670..1177518	-	282	16078163	yitH	BSU10990	-	hypothetical protein
1100	 49.03	+1	1177523..1177987	-	154	16078164	yitI	BSU11000	-	hypothetical protein
1101	 48.29	+1	1178062..1179900	-	612	16078165	yitJ	BSU11010	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1102	 42.28	0	1180214..1180705	-	163	16078166	yitK	BSU11020	-	nucleotide-binding protein
1103	 46.71	0	1180804..1181700	+	298	16078167	yitL	BSU11030	-	hypothetical protein
1104	 41.71	0	1181753..1182337	-	194	16078168	yitM	BSU11040	-	hypothetical protein
1105	 43.90	0	1182334..1182702	-	122	16078169	yitN	BSU11050	-	hypothetical protein
1106	 50.70	+1	1182834..1183046	-	70	16078170	yitO	BSU11060	-	hypothetical protein
1107	 46.37	0	1183247..1183783	-	178	16078171	yitP	BSU11070	-	hypothetical protein
1108	 45.53	0	1184155..1184892	+	245	16078172	yitQ	BSU11080	-	hypothetical protein
1109	 39.12	0	1184912..1185205	+	97	16078173	yitR	BSU11090	-	hypothetical protein
1110	 45.58	0	1185341..1186957	+	538	16078174	nprB	BSU11100	-	extracellular neutral protease B
1111	 45.89	0	1187004..1187855	-	283	16078175	yitS	BSU11110	-	hypothetical protein
1112	 44.48	0	1187993..1188835	+	280	16078176	yitT	BSU11120	-	hypothetical protein
1113	 41.11	0	1188950..1189309	+	119	16078177	ipi	BSU11130	-	intracellular proteinase inhibitor BsuPI
1114	 45.63	0	1189794..1190606	-	270	16078178	yitU	BSU11140	-	hypothetical protein
1115	 48.83	+1	1190727..1191494	+	255	16078179	yitV	BSU11150	-	hypothetical protein
1116	 45.95	0	1191558..1191866	+	102	16078180	yitW	BSU11160	-	hypothetical protein
1117	 44.86	0	1192162..1193592	+	476	50812216	yitY	BSU11170	-	hypothetical protein
1118	 44.24	0	1193637..1194131	+	164	16078183	yitZ	BSU11180	-	hypothetical protein
1119	 46.21	0	1194338..1195378	+	346	16078184	argC	BSU11190	-	N-acetyl-gamma-glutamyl-phosphate reductase
1120	 49.71	+1	1195398..1196618	+	406	16078185	argJ	BSU11200	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1121	 48.13	+1	1196633..1197409	+	258	16078186	argB	BSU11210	-	acetylglutamate kinase
1122	 49.57	+1	1197406..1198563	+	385	16078187	argD	BSU11220	-	acetylornithine aminotransferase
1123	 46.89	0	1198634..1199695	+	353	16078188	carA	BSU11230	-	carbamoyl phosphate synthase small subunit
1124	 46.94	0	1199688..1202780	+	1030	50812217	carB	BSU11240	-	carbamoyl phosphate synthase large subunit
1125	 48.44	+1	1202768..1203727	+	319	16078190	argF	BSU11250	-	ornithine carbamoyltransferase
1126	 52.22	+1	1203813..1203992	+	59	16078191	yjzC	BSU11260	-	hypothetical protein
1127	 36.02	-1	1204038..1204223	-	61	16078192	yjzD	BSU11270	-	hypothetical protein
1128	 42.86	0	1204472..1205206	+	244	16078193	yjaU	BSU11280	-	hypothetical protein
1129	 40.44	0	1205288..1205695	+	135	16078194	yjaV	BSU11290	-	hypothetical protein
1130	 43.08	0	1205937..1206890	+	317	50812218	med	BSU11300	-	positive regulator of comK
1131	 41.67	0	1206905..1207096	+	63	16078196	comZ	BSU11310	-	late competence gene
1132	 41.25	0	1207126..1207365	-	79	16078197	yjzB	BSU11320	-	hypothetical protein
1133	 46.22	0	1207530..1208468	+	312	16078198	fabHA	BSU11330	-	3-oxoacyl-(acyl carrier protein) synthase III
1134	 46.70	0	1208491..1209732	+	413	16078199	fabF	BSU11340	-	3-oxoacyl-(acyl carrier protein) synthase II
1135	 43.00	0	1209808..1210593	+	261	16078200	yjaZ	BSU11350	-	hypothetical protein
1136	 45.90	0	1210785..1211771	+	328	16078201	appD	BSU11360	-	oligopeptide ABC transporter ATP-binding protein
1137	 45.96	0	1211768..1212757	+	329	16078202	appF	BSU11370	-	oligopeptide ABC transporter ATP-binding protein
1138	 40.01	0	1212845..1214476	+	543	16078203	appA	BSU11380	-	oligopeptide ABC transporter (oligopeptide-binding protein)
1139	 41.93	0	1214552..1215505	+	317	16078204	appB	BSU11390	-	oligopeptide ABC transporter (permease)
1140	 43.20	0	1215522..1216433	+	303	16078205	appC	BSU11400	-	oligopeptide ABC transporter (permease)
1141	 41.83	0	1216639..1217391	+	250	16078206	yjbA	BSU11410	-	hypothetical protein
1142	 45.32	0	1217426..1218418	-	330	16078207	trpS	BSU11420	-	tryptophanyl-tRNA synthetase
1143	 41.45	0	1219162..1220799	+	545	16078208	oppA	BSU11430	-	oligopeptide ABC transporter (binding protein)
1144	 44.66	0	1220907..1221842	+	311	16078209	oppB	BSU11440	-	oligopeptide ABC transporter (permease)
1145	 44.77	0	1221846..1222763	+	305	16078210	oppC	BSU11450	-	oligopeptide ABC transporter (permease)
1146	 47.08	0	1222768..1223844	+	358	16078211	oppD	BSU11460	-	oligopeptide ABC transporter ATP-binding protein
1147	 44.88	0	1223846..1224763	+	305	16078212	oppF	BSU11470	-	oligopeptide ABC transporter ATP-binding protein
1148	 45.65	0	1224870..1226087	+	405	50812219	yjbB	BSU11480	-	hypothetical protein
1149	 38.17	-1	1226251..1226829	+	192	16078214	yjbC	BSU11490	-	hypothetical protein
1150	 41.92	0	1227010..1227405	+	131	16078215	spxA	BSU11500	-	transcriptional regulator Spx
1151	 46.42	0	1227448..1228104	-	218	16078216	yjbE	BSU11510	-	hypothetical protein
1152	 40.03	0	1228381..1229037	+	218	16078217	mecA	BSU11520	-	adaptor protein
1153	 44.92	0	1229228..1230349	+	373	16078218	yjbF	BSU11530	-	hypothetical protein
1154	 43.93	0	1230579..1232408	+	609	16078219	yjbG	BSU11540	-	hypothetical protein
1155	 42.27	0	1232926..1233753	-	275	16078220	yjbH	BSU11550	-	hypothetical protein
1156	 47.62	0	1233822..1234220	-	132	16078221	yjbI	BSU11560	-	hypothetical protein
1157	 46.52	0	1234475..1235020	-	181	16078222	yjbJ	BSU11570	-	hypothetical protein
1158	 41.54	0	1235224..1235796	-	190	16078223	yjbK	BSU11580	-	hypothetical protein
1159	 39.57	0	1235921..1236289	+	122	16078224	yjbL	BSU11590	-	hypothetical protein
1160	 45.44	0	1236318..1236953	+	211	16078225	yjbM	BSU11600	-	hypothetical protein
1161	 45.57	0	1236972..1237772	+	266	16078226	ppnK	BSU11610	-	inorganic polyphosphate/ATP-NAD kinase
1162	 49.77	+1	1237835..1238686	+	283	16078227	yjbO	BSU11620	-	hypothetical protein
1163	 46.53	0	1238699..1239433	-	244	16078228	yjbP	BSU11630	-	bis(5'-nucleosyl)-tetraphosphatase PrpE
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.