IslandPathversion 1.0

IslandPath Analysis: Bacillus subtilis subsp. subtilis str. 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.31 STD DEV: 4.61
Bacillus subtilis subsp. subtilis str. 168, complete genome - 1..4214630
4105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1031	 45.33	0	1105307..1105756	+	149	16078095	yhfO	BSU10310	-	hypothetical protein
1032	 50.35	+1	1105828..1106820	+	330	16078096	yhfP	BSU10320	-	hypothetical protein
1033	 44.79	0	1106962..1108008	+	348	16078097	yhfQ	BSU10330	-	hypothetical protein
1034	 47.25	0	1108040..1108621	-	193	16078098	yhfR	BSU10340	-	hypothetical protein
1035	 52.69	+2	1108692..1109786	-	364	16078099	yhfS	BSU10350	-	acetyl-CoA acetyltransferase
1036	 49.10	+1	1109783..1111222	-	479	16078100	yhfT	BSU10360	-	acyl-CoA synthetase
1037	 47.42	0	1111229..1111789	-	186	16078101	yhfU	BSU10370	-	hypothetical protein
1038	 41.19	0	1111924..1113222	-	432	16078102	hemAT	BSU10380	-	haem-based aerotactic transducer
1039	 45.69	0	1113361..1114890	-	509	16078103	yhfW	BSU10390	-	hypothetical protein
1040	 48.02	+1	1115002..1115859	+	285	16078104	yhxC	BSU10400	-	hypothetical protein
1041	 41.03	0	1115887..1116120	-	77	16078105	yhzC	BSU10410	-	hypothetical protein
1042	 44.04	0	1116413..1116991	+	192	16078106	comK	BSU10420	-	competence transcription factor (CTF)
1043	 48.78	+1	1117038..1117937	-	299	16078107	yhxD	BSU10430	-	hypothetical protein
1044	 45.93	0	1118154..1118423	+	89	16078108	yhjA	BSU10440	-	hypothetical protein
1045	 49.80	+1	1118466..1119935	-	489	16078109	yhjB	BSU10450	-	hypothetical protein
1046	 44.78	0	1119932..1120132	-	66	16078110	yhjC	BSU10460	-	hypothetical protein
1047	 40.22	0	1120340..1120702	-	120	16078111	yhjD	BSU10470	-	hypothetical protein
1048	 47.44	0	1120855..1121478	+	207	16078112	yhjE	BSU10480	-	hypothetical protein
1049	 41.42	0	1121480..1121986	+	168	16078113	sipV	BSU10490	-	type I signal peptidase
1050	 53.33	+2	1122166..1123665	+	499	16078114	yhjG	BSU10500	-	hypothetical protein
1051	 42.80	0	1123742..1124269	+	175	16078115	yhjH	BSU10510	-	hypothetical protein
1052	 33.58	-2	1124427..1125632	-	401	16078116	glcP	BSU10520	-	glucose/mannose:H+ symporter
1053	 37.32	-1	1125704..1126756	-	350	16078117	yhjJ	BSU10530	-	hypothetical protein
1054	 35.08	-1	1126759..1127619	-	286	16078118	yhjK	BSU10540	-	hypothetical protein
1055	 34.31	-1	1127591..1128916	-	441	16078119	yhjL	BSU10550	-	hypothetical protein
1056	 35.56	-1	1129020..1130009	+	329	16078120	yhjM	BSU10560	-	hypothetical protein
1057	 50.13	+1	1130223..1131377	-	384	16078121	yhjN	BSU10570	-	hypothetical protein
1058	 48.26	+1	1131484..1132689	-	401	16078122	yhjO	BSU10580	-	hypothetical protein
1059	 47.51	0	1132803..1134530	+	575	16078123	yhjP	BSU10590	-	hypothetical protein
1060	 49.54	+1	1134560..1134886	-	108	16078124	yhjQ	BSU10600	-	hypothetical protein
1061	 47.72	0	1135004..1135441	-	145	16078125	yhjR	BSU10610	-	hypothetical protein
1062	 49.04	+1	1135625..1139125	+	1166	16078126	addB	BSU10620	-	ATP-dependent deoxyribonuclease (subunit B)
1063	 48.77	+1	1139112..1142810	+	1232	16078127	addA	BSU10630	-	ATP-dependent deoxyribonuclease (subunit A)
1064	 51.62	+1	1142882..1144057	+	391	50812209	sbcD	BSU10640	-	exonuclease SbcD-like protein
1065	 48.10	+1	1144054..1147446	+	1130	16078129	yirY	BSU10650	-	hypothetical protein
1066	 45.21	0	1147460..1147762	+	100	16078130	yisB	BSU10660	-	hypothetical protein
1067	 44.30	0	1147799..1148026	-	75	16078131	gerPF	BSU10670	-	spore germination protein
1068	 46.02	0	1148049..1148450	-	133	16078132	gerPE	BSU10680	-	spore germination protein
1069	 46.89	0	1148450..1148626	-	58	16078133	gerPD	BSU10690	-	spore germination protein
1070	 44.01	0	1148623..1149240	-	205	16078134	gerPC	BSU10700	-	spore germination protein
1071	 49.79	+1	1149263..1149505	-	80	16078135	gerPB	BSU10710	-	spore germination protein
1072	 50.45	+1	1149511..1149732	-	73	16078136	gerPA	BSU10720	-	spore germination protein
1073	 36.26	-1	1150155..1150325	-	56	16078137	yisI	BSU10730	-	hypothetical protein
1074	 45.35	0	1150471..1151394	-	307	16078138	yisJ	BSU10740	-	hypothetical protein
1075	 46.47	0	1151549..1152454	+	301	16078139	yisK	BSU10750	-	hypothetical protein
1076	 45.38	0	1152570..1152926	+	118	16078140	yisL	BSU10760	-	hypothetical protein
1077	 44.92	0	1153094..1155778	+	894	16078141	wprA	BSU10770	-	cell wall-associated protein precursor (CWBP23, CWBP52)
1078	 48.47	+1	1155809..1156396	-	195	16078142	yisN	BSU10780	-	hypothetical protein
1079	 47.53	0	1156542..1158386	+	614	50812210	asnO	BSU10790	-	asparagine synthetase
1080	 34.38	-1	1158516..1158995	-	159	50812211	yizA	BSU10800	-	hypothetical protein
1081	 46.79	0	1159227..1160051	+	274	16078144	yisP	BSU10810	-	hypothetical protein
1082	 45.39	0	1160081..1161448	-	455	16078145	yisQ	BSU10820	-	hypothetical protein
1083	 47.45	0	1161572..1162435	+	287	16078146	yisR	BSU10830	-	hypothetical protein
1084	 47.63	0	1162453..1163466	+	337	16078147	degA	BSU10840	-	LacI family transcription regulator
1085	 48.40	+1	1163675..1164703	+	342	16078148	yisS	BSU10850	-	hypothetical protein
1086	 45.88	0	1164754..1165263	-	169	50812212	yisT	BSU10860	-	hypothetical protein
1087	 47.81	0	1165313..1165975	-	220	16078150	yisU	BSU10870	-	hypothetical protein
1088	 49.97	+1	1166042..1167496	+	484	50812213	yisV	BSU10880	-	hypothetical protein
1089	 44.91	0	1167504..1168142	-	212	16078153	yisX	BSU10890	-	hypothetical protein
1090	 47.46	0	1168348..1169154	+	268	16078154	yisY	BSU10900	-	hypothetical protein
1091	 46.83	0	1169182..1169781	-	199	16078155	yisZ	BSU10910	-	hypothetical protein
1092	 50.09	+1	1169778..1170947	-	389	50812214	sat	BSU10920	-	sulfate adenylyltransferase
1093	 48.24	+1	1171060..1171770	-	236	50812215	yitB	BSU10930	-	hypothetical protein
1094	 46.87	0	1171955..1172641	+	228	16078158	yitC	BSU10940	-	hypothetical protein
1095	 42.82	0	1172638..1173396	+	252	16078159	yitD	BSU10950	-	hypothetical protein
1096	 45.87	0	1173441..1174070	-	209	16078160	yitE	BSU10960	-	hypothetical protein
1097	 50.27	+1	1174166..1175281	-	371	16078161	yitF	BSU10970	-	hypothetical protein
1098	 45.63	0	1175290..1176558	-	422	16078162	yitG	BSU10980	-	hypothetical protein
1099	 46.41	0	1176670..1177518	-	282	16078163	yitH	BSU10990	-	hypothetical protein
1100	 49.03	+1	1177523..1177987	-	154	16078164	yitI	BSU11000	-	hypothetical protein
1101	 48.29	+1	1178062..1179900	-	612	16078165	yitJ	BSU11010	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1102	 42.28	0	1180214..1180705	-	163	16078166	yitK	BSU11020	-	nucleotide-binding protein
1103	 46.71	0	1180804..1181700	+	298	16078167	yitL	BSU11030	-	hypothetical protein
1104	 41.71	0	1181753..1182337	-	194	16078168	yitM	BSU11040	-	hypothetical protein
1105	 43.90	0	1182334..1182702	-	122	16078169	yitN	BSU11050	-	hypothetical protein
1106	 50.70	+1	1182834..1183046	-	70	16078170	yitO	BSU11060	-	hypothetical protein
1107	 46.37	0	1183247..1183783	-	178	16078171	yitP	BSU11070	-	hypothetical protein
1108	 45.53	0	1184155..1184892	+	245	16078172	yitQ	BSU11080	-	hypothetical protein
1109	 39.12	0	1184912..1185205	+	97	16078173	yitR	BSU11090	-	hypothetical protein
1110	 45.58	0	1185341..1186957	+	538	16078174	nprB	BSU11100	-	extracellular neutral protease B
1111	 45.89	0	1187004..1187855	-	283	16078175	yitS	BSU11110	-	hypothetical protein
1112	 44.48	0	1187993..1188835	+	280	16078176	yitT	BSU11120	-	hypothetical protein
1113	 41.11	0	1188950..1189309	+	119	16078177	ipi	BSU11130	-	intracellular proteinase inhibitor BsuPI
1114	 45.63	0	1189794..1190606	-	270	16078178	yitU	BSU11140	-	hypothetical protein
1115	 48.83	+1	1190727..1191494	+	255	16078179	yitV	BSU11150	-	hypothetical protein
1116	 45.95	0	1191558..1191866	+	102	16078180	yitW	BSU11160	-	hypothetical protein
1117	 44.86	0	1192162..1193592	+	476	50812216	yitY	BSU11170	-	hypothetical protein
1118	 44.24	0	1193637..1194131	+	164	16078183	yitZ	BSU11180	-	hypothetical protein
1119	 46.21	0	1194338..1195378	+	346	16078184	argC	BSU11190	-	N-acetyl-gamma-glutamyl-phosphate reductase
1120	 49.71	+1	1195398..1196618	+	406	16078185	argJ	BSU11200	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1121	 48.13	+1	1196633..1197409	+	258	16078186	argB	BSU11210	-	acetylglutamate kinase
1122	 49.57	+1	1197406..1198563	+	385	16078187	argD	BSU11220	-	acetylornithine aminotransferase
1123	 46.89	0	1198634..1199695	+	353	16078188	carA	BSU11230	-	carbamoyl phosphate synthase small subunit
1124	 46.94	0	1199688..1202780	+	1030	50812217	carB	BSU11240	-	carbamoyl phosphate synthase large subunit
1125	 48.44	+1	1202768..1203727	+	319	16078190	argF	BSU11250	-	ornithine carbamoyltransferase
1126	 52.22	+1	1203813..1203992	+	59	16078191	yjzC	BSU11260	-	hypothetical protein
1127	 36.02	-1	1204038..1204223	-	61	16078192	yjzD	BSU11270	-	hypothetical protein
1128	 42.86	0	1204472..1205206	+	244	16078193	yjaU	BSU11280	-	hypothetical protein
1129	 40.44	0	1205288..1205695	+	135	16078194	yjaV	BSU11290	-	hypothetical protein
1130	 43.08	0	1205937..1206890	+	317	50812218	med	BSU11300	-	positive regulator of comK
43.31	MEAN

4.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.